Rorug04G0181400

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012287
Physical Location & Seq
Reverse (-)
31749582 .. 31752234
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0181400.1

Sequence Viewer

Length: 1395 bp
ATGTTCAAGTGGTTTCAATCAAAGTGTCTTCCGCACCAAAACCAAGTTGCTAGTGAGTCGGTGCACGGCAGGAACTTGGCTCTGAATGAACTAGGCTGCAGTGTTTGCCTGGAGGAAAATAAAGTGTGCAAATGTGAGCAAAGTTTCGAGAGCTGTAAGAAAGTCGACTCAGATGTTAGCGATGATAAGCAACATGGAGAGTCCAATAATTCTGTTACTCATGCTGTGATCAACATGACTGGGATGCTCATAGGTTTGGGGCAGTTATCAACTCCATATGCCATAGAATCTGGAGGGTGGGTTTCTGCATTCTTAATGATAGGACTTGGTGTTGTATGTGCTTATTGTTCTCATCTACTCGGGAAATGCCTAGACAAACATCCCAAGTCAAGAAGCTACACAGATATTGGACAGAATGCATTTGGAACCAAAGGAAAACTCCTAGCAGCAACCTTCATTTACTTGGAGATCTTCATGGCCCTTGTGTCCTACACCATCTCATTGCATGACAACATAAACAGAGTTTTCTCGGGGACCCAAGTTCAGATTCCATGGGCCAAGTTATCGAGATCTCAGCTCCTGACGTTGGTGGCGGTTCTGATTGCTCTGCCAAGTCTGTGGTTGAGAGATCTCTCTTCCATATCATTCCTTTCCTTTGGTGGTGTTCTCATGTCAGTTGCCATTTTTTCATCAGTGGCATGCACAGGCATTTTTGGAGGGGTGAAAGCTAATCATAGTATACCAGTCCTTCAGATTCAAAACATTCCTGCAATATCTGGCCTTTATATCTTCAGCTATGCAGGACATATTGTCTTTCCTAATTTATACAAGGCCATGAAAGATCCTTCCAAGTTCACCAAGGTATCTATAATAAGCTTCAGCTTGGTCACTCTGCTTTACAGCGCTCTAGCCTTCATGGGTGCCAAGTTGTTTGGTCCCCAAGTAAATCCCCAAATCACTCTAAGCATGCCTCCCCATCTTATTGTTACAAAGATTGCACTATGGGCCACAGTGCTCACACCAATGACCAAATATGCTTTGGAATTTGCACCAATGGCAATCCAGCTGGAGCATAATCTCCCAGATTCCATGAGTTCAAGAACAAAGTTGATTGTGAGAGGTACTGTTGGTTCCTTTCTACTTCTGGTGATTCTCGCACTAGCTCTGTCAGTTCCATATTTTCAGTATGTTCTCAGCCTCACTGGATCCCTTGTAAGCATTGCTATTTGTGTCATTCTCCCTTGTGCCTTCTACCTCAAGATCTGTTGGGCTCAGTTATCAAGGCCTCTTCTGGTCCTAAACTTCACCTTGATTGCATTTGGGTTTGTTCTTGGAGTGTTTGGAACCATTTCCTCATCAAAGTTGCTCATGCAGAATCTGAGCAGAGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

464

Amino Acids

50.58

Weight (kDa)

9.08

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 69 - 451 1.9e-65 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15890 AT4G15890
fragaria_vesca FvH4_4g18310
malus_domestica MD16G1167900.v1.1
prunus_persica Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1
pyrus_communis pycom16g14150
rosa_chinensis RchiOBHm_Chr4g0422791
rosa_laevigata RLG00000007605
rosa_multiflora Rmu_sc0000830.1_g000049
rosa_roxburghii Rroxscaffold_5G00364640
rosa_rugosa Rorug04G0181400
rosa_samantha Rh4AG241800 Rh4BG245200 Rh4CG255700 Rh4DG240400
rosa_wichuraiana Rw4G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 920
AccI GTMKAC 2 cut(s) 165, 739
AciI CCGC 2 cut(s) 32, 593
AclWI GGATC 3 cut(s) 836, 1200, 1213
AcsI RAATTY 1 cut(s) 1043
AcuI CTGAAG 3 cut(s) 734, 775, 862
AfaI GTAC 1 cut(s) 1123
AfeI AGCGCT 1 cut(s) 904
AfiI CCNNNNNNNGG 1 cut(s) 586
AgsI TTSAA 4 cut(s) 7, 17, 758, 1098
AhdI GACNNNNNGTC 1 cut(s) 809
AjnI CCWGG 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
Alw21I GWGCWC 3 cut(s) 66, 1017, 1390
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 3 cut(s) 836, 1200, 1213
AlwNI CAGNNNCTG 2 cut(s) 580, 1378
Ama87I CYCGRG 2 cut(s) 359, 529
Aor51HI AGCGCT 1 cut(s) 904
AoxI GGCC 6 cut(s) 477, 555, 778, 831, 1005, 1283
ApaLI GTGCAC 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 96, 446
ApoI RAATTY 1 cut(s) 1043
Asp700I GAANNNNTTC 1 cut(s) 1348
AspLEI GCGC 1 cut(s) 905
AspS9I GGNCC 6 cut(s) 478, 534, 555, 935, 1005, 1294
AsuHPI GGTGA 4 cut(s) 733, 847, 1159, 1297
AvaI CYCGRG 2 cut(s) 359, 529
AvaII GGWCC 3 cut(s) 534, 935, 1294
BaeGI GKGCMC 1 cut(s) 66
BaeI ACNNNNGTAYC 2 cut(s) 846, 879
BamHI GGATCC 1 cut(s) 1205
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 2 cut(s) 1273, 1390
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 3 cut(s) 66, 1017, 1390
BbvI GCAGC 2 cut(s) 83, 458
BccI CCATC 2 cut(s) 503, 984
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 228
BfaI CTAG 6 cut(s) 51, 92, 371, 443, 908, 1160
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 906
BglII AGATCT 4 cut(s) 468, 569, 628, 1260
BisI GCNGC 2 cut(s) 97, 447
BlsI GCNGC 2 cut(s) 98, 448
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 3 cut(s) 534, 935, 1294
BmeRI GACNNNNNGTC 1 cut(s) 809
BmeT110I CYCGRG 2 cut(s) 359, 529
BmgT120I GGNCC 6 cut(s) 478, 534, 555, 935, 1005, 1294
BmiI GGNNCC 8 cut(s) 427, 535, 536, 922, 937, 1132, 1207, 1345
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 20
BplI GAGNNNNNCTC 1 cut(s) 1372
BpmI CTGGAG 3 cut(s) 131, 312, 1088
BpuEI CTTGAG 1 cut(s) 1241
BsaJI CCNNGG 2 cut(s) 551, 858
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 3 cut(s) 244, 743, 1207
Bse3DI GCAATG 2 cut(s) 500, 1218
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 551, 858
BseGI GGATG 2 cut(s) 249, 379
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 500, 1218
BseMII CTCAG 5 cut(s) 183, 587, 1207, 1286, 1370
BseNI ACTGG 3 cut(s) 244, 743, 1207
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 2 cut(s) 83, 458
BshFI GGCC 6 cut(s) 479, 557, 780, 833, 1007, 1285
BshNI GGYRCC 1 cut(s) 920
BsiHKAI GWGCWC 3 cut(s) 66, 1017, 1390
BsiHKCI CYCGRG 2 cut(s) 359, 529
BslFI GGGAC 2 cut(s) 547, 921
BslI CCNNNNNNNGG 1 cut(s) 586
BsmFI GGGAC 2 cut(s) 547, 921
BsmI GAATGC 2 cut(s) 308, 421
BsnI GGCC 6 cut(s) 479, 557, 780, 833, 1007, 1285
BsoBI CYCGRG 2 cut(s) 359, 529
Bsp1286I GDGCHC 4 cut(s) 66, 1017, 1273, 1390
Bsp143I GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
Bsp19I CCATGG 1 cut(s) 551
BspACI CCGC 2 cut(s) 32, 593
BspANI GGCC 6 cut(s) 479, 557, 780, 833, 1007, 1285
BspCNI CTCAG 5 cut(s) 182, 586, 1206, 1285, 1371
BspLI GGNNCC 8 cut(s) 427, 535, 536, 922, 937, 1132, 1207, 1345
BspMAI CTGCAG 1 cut(s) 101
BspPI GGATC 3 cut(s) 836, 1200, 1213
BspT107I GGYRCC 1 cut(s) 920
BsrDI GCAATG 2 cut(s) 500, 1218
BsrI ACTGG 3 cut(s) 244, 743, 1207
BssECI CCNNGG 2 cut(s) 551, 858
BssMI GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
BssNAI GTATAC 1 cut(s) 740
BssT1I CCWWGG 2 cut(s) 551, 858
Bst1107I GTATAC 1 cut(s) 740
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 1012, 1126
Bst6I CTCTTC 2 cut(s) 640, 1293
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 700, 968
BstDEI CTNAG 6 cut(s) 169, 573, 962, 1193, 1272, 1379
BstDSI CCRYGG 1 cut(s) 551
BstF5I GGATG 2 cut(s) 249, 379
BstH2I RGCGCY 1 cut(s) 906
BstHHI GCGC 1 cut(s) 905
BstKTI GATC 7 cut(s) 231, 471, 572, 631, 844, 1208, 1263
BstMBI GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
BstMWI GCNNNNNNNGC 3 cut(s) 105, 1004, 1055
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 702, 970
BstSCI CCNGG 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 83, 458
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 6 cut(s) 468, 569, 628, 841, 1205, 1260
BstXI CCANNNNNNTGG 1 cut(s) 618
BstYI RGATCY 6 cut(s) 468, 569, 628, 841, 1205, 1260
BstZ17I GTATAC 1 cut(s) 740
BsuRI GGCC 6 cut(s) 479, 557, 780, 833, 1007, 1285
BtgI CCRYGG 1 cut(s) 551
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 249, 379
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 5 cut(s) 106, 699, 1017, 1200, 1390
Cac8I GCNNGC 2 cut(s) 700, 968
CaiI CAGNNNCTG 2 cut(s) 580, 1378
CfoI GCGC 1 cut(s) 905
Cfr13I GGNCC 6 cut(s) 478, 534, 555, 935, 1005, 1294
Csp6I GTAC 1 cut(s) 1122
CviQI GTAC 1 cut(s) 1122
DdeI CTNAG 6 cut(s) 169, 573, 962, 1193, 1272, 1379
DpnI GATC 7 cut(s) 230, 470, 571, 630, 843, 1207, 1262
DpnII GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
DriI GACNNNNNGTC 1 cut(s) 809
Eam1104I CTCTTC 2 cut(s) 640, 1293
Eam1105I GACNNNNNGTC 1 cut(s) 809
EarI CTCTTC 2 cut(s) 640, 1293
Ecl136II GAGCTC 1 cut(s) 1388
Eco130I CCWWGG 2 cut(s) 551, 858
Eco147I AGGCCT 1 cut(s) 1285
Eco24I GRGCYC 2 cut(s) 1273, 1390
Eco47I GGWCC 3 cut(s) 534, 935, 1294
Eco47III AGCGCT 1 cut(s) 904
Eco53kI GAGCTC 1 cut(s) 1388
Eco57I CTGAAG 3 cut(s) 734, 775, 862
Eco88I CYCGRG 2 cut(s) 359, 529
EcoICRI GAGCTC 1 cut(s) 1388
EcoO109I RGGNCCY 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 2 cut(s) 551, 858
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 2 cut(s) 1273, 1390
ErhI CCWWGG 2 cut(s) 551, 858
FaqI GGGAC 2 cut(s) 547, 921
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 228
FblI GTMKAC 2 cut(s) 165, 739
Fnu4HI GCNGC 2 cut(s) 97, 447
FokI GGATG 2 cut(s) 256, 366
FriOI GRGCYC 2 cut(s) 1273, 1390
Fsp4HI GCNGC 2 cut(s) 97, 447
FspBI CTAG 6 cut(s) 51, 92, 371, 443, 908, 1160
GlaI GCGC 1 cut(s) 904
GluI GCNGC 2 cut(s) 97, 447
GsuI CTGGAG 3 cut(s) 131, 312, 1088
HaeII RGCGCY 1 cut(s) 906
HaeIII GGCC 6 cut(s) 479, 557, 780, 833, 1007, 1285
HhaI GCGC 1 cut(s) 905
Hin6I GCGC 1 cut(s) 903
HinP1I GCGC 1 cut(s) 903
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 874
HinfI GANTC 9 cut(s) 56, 167, 200, 287, 547, 754, 1085, 1150, 1375
HphI GGTGA 4 cut(s) 733, 847, 1159, 1297
Hpy166II GTNNAC 4 cut(s) 64, 166, 740, 855
Hpy188I TCNGA 6 cut(s) 84, 172, 546, 600, 753, 1380
Hpy188III TCNNGA 8 cut(s) 148, 291, 361, 390, 567, 580, 1098, 1258
Hpy8I GTNNAC 4 cut(s) 64, 166, 740, 855
HpyAV CCTTC 5 cut(s) 463, 758, 855, 922, 1258
HpyCH4III ACNGT 2 cut(s) 1012, 1126
HpyCH4IV ACGT 1 cut(s) 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 1004, 1055
HpyF3I CTNAG 6 cut(s) 169, 573, 962, 1193, 1272, 1379
HpySE526I ACGT 1 cut(s) 584
HspAI GCGC 1 cut(s) 903
KflI GGGWCCC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
LmnI GCTCC 2 cut(s) 582, 1069
Lsp1109I GCAGC 2 cut(s) 83, 458
LweI GCATC 1 cut(s) 234
MaeI CTAG 6 cut(s) 51, 92, 371, 443, 908, 1160
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 3 cut(s) 214, 886, 985
MalI GATC 7 cut(s) 230, 470, 571, 630, 843, 1207, 1262
MboI GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
MboII GAAGA 5 cut(s) 20, 463, 627, 781, 1280
MflI RGATCY 6 cut(s) 468, 569, 628, 841, 1205, 1260
MhlI GDGCHC 4 cut(s) 66, 1017, 1273, 1390
MluCI AATT 3 cut(s) 208, 820, 1043
MlyI GAGTC 3 cut(s) 65, 161, 209
MnlI CCTC 9 cut(s) 106, 287, 710, 981, 1112, 1208, 1265, 1296, 1363
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 1348
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 1022
MspA1I CMGCKG 1 cut(s) 1066
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 2 cut(s) 308, 421
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 105, 1004, 1055
NcoI CCATGG 1 cut(s) 551
NdeI CATATG 1 cut(s) 277
NdeII GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
NlaIV GGNNCC 8 cut(s) 427, 535, 536, 922, 937, 1132, 1207, 1345
NmuCI GTSAC 1 cut(s) 886
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 2 cut(s) 702, 970
PaeI GCATGC 2 cut(s) 702, 970
PceI AGGCCT 1 cut(s) 1285
PctI GAATGC 2 cut(s) 308, 421
PdmI GAANNNNTTC 1 cut(s) 1348
PfeI GAWTC 6 cut(s) 287, 547, 754, 1085, 1150, 1375
PkrI GCNGC 2 cut(s) 98, 448
PleI GAGTC 3 cut(s) 64, 161, 208
PpsI GAGTC 3 cut(s) 64, 161, 208
PpuMI RGGWCCY 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 1390
Psp5II RGGWCCY 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 8 cut(s) 427, 535, 536, 922, 937, 1132, 1207, 1345
PspPI GGNCC 6 cut(s) 478, 534, 555, 935, 1005, 1294
PspPPI RGGWCCY 1 cut(s) 534
PsrI GAACNNNNNNTAC 2 cut(s) 1114, 1146
PstI CTGCAG 1 cut(s) 101
PstNI CAGNNNCTG 2 cut(s) 580, 1378
PsuI RGATCY 6 cut(s) 468, 569, 628, 841, 1205, 1260
PvuII CAGCTG 1 cut(s) 1066
RsaI GTAC 1 cut(s) 1123
RsaNI GTAC 1 cut(s) 1122
RseI CAYNNNNRTG 1 cut(s) 1022
SacI GAGCTC 1 cut(s) 1390
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 2 cut(s) 97, 447
Sau3AI GATC 7 cut(s) 228, 468, 569, 628, 841, 1205, 1260
Sau96I GGNCC 6 cut(s) 478, 534, 555, 935, 1005, 1294
SchI GAGTC 3 cut(s) 65, 161, 209
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 4 cut(s) 66, 1017, 1273, 1390
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 3 cut(s) 534, 935, 1294
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 1 cut(s) 1256
SmoI CTYRAG 1 cut(s) 1256
SphI GCATGC 2 cut(s) 702, 970
Sse9I AATT 3 cut(s) 208, 820, 1043
SseBI AGGCCT 1 cut(s) 1285
SsiI CCGC 2 cut(s) 32, 593
SspMI CTAG 6 cut(s) 51, 92, 371, 443, 908, 1160
SstI GAGCTC 1 cut(s) 1390
StuI AGGCCT 1 cut(s) 1285
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 2 cut(s) 551, 858
TaaI ACNGT 2 cut(s) 1012, 1126
TaiI ACGT 1 cut(s) 587
TaqI TCGA 3 cut(s) 147, 165, 566
TasI AATT 3 cut(s) 208, 820, 1043
TfiI GAWTC 6 cut(s) 287, 547, 754, 1085, 1150, 1375
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 4 cut(s) 106, 699, 1017, 1207
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 2 cut(s) 96, 446
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 6 cut(s) 102, 445, 463, 678, 851, 904
TspRI CASTG 4 cut(s) 106, 699, 1017, 1207
VneI GTGCAC 1 cut(s) 62
VpaK11BI GGWCC 3 cut(s) 534, 935, 1294
XapI RAATTY 1 cut(s) 1043
XceI RCATGY 2 cut(s) 702, 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 1036
XmiI GTMKAC 2 cut(s) 165, 739
XmnI GAANNNNTTC 1 cut(s) 1348
XspI CTAG 6 cut(s) 51, 92, 371, 443, 908, 1160
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.