RchiOBHm_Chr4g0422791

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012287
Physical Location & Seq
Forward (+)
48374168 .. 48380634
6467 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39223

Sequence Viewer

Length: 4092 bp
ATGAGGGGCAAAAATATAATTAAATTCCAAAAAGCGGGAAAACCAAAATTTCAAAAATCCAGAAAGGGGGATCCATTTCTACCTGAGCAGTCTCACAACGACCTCAAACCCAAATCAGGTATGGAAGAAACCATAACCCGAATAGTCACAGAGCTCGAAGACCTCCGCCACCTCGAAAACCCCACCAACACCCAATCCCAACCCATCTCCGATTCCACTCTCTCCGACCTCCAAACCCTCTTCGACTCCAATGACCCCGACCCCGTGGACCGCTTCTCCAACGAGCTCGCCGCCAAGTCCCTCTCCCTCTCCAATCTGGTCCGCCCCATCGCAGCCGCCATGGATTCCGGCCCGGCCCATTTCACCCTCTCCGCCTCCAAGCTCTACCTCTCTCTCCTCCTCTCCCCCAATTCCCCCGTCTGCACTATCTTCACTCCCATGGCGTTCTTCTCTCTCCTCCAGTCGATTCGCCGGTCGCTGAAGCACCGCCGCGCCGAATCGGGTCACGGCGAGCCCGGCACTGGGTCCGGTAACGCGGCCGCTAGGAAGCGGAAGGGGCGAGGCAAAGGTAAGGGTTTGAAGAACAGTGAGGATTGCGAGAGCGAAGAGAGGGAGTTTGATGTTAGGGTTTTGTTTTCGGTGCTTGAAAAATTGGAACTTGTGATGGATTTGGTTCATTTGGATCGGTTTCCGGATAGTTTGAAGTCGTTGGTTCAAACCGTGGCTGAAATTCCAGTCATGGGGTTTGAGGTGTGTGGCAATTCTGGTAATTATAACAAATTGACTGATTTGTGCTCTAGGGTTTTGCTTAAGGTGTTCAAGCCTGAGCATGGAGACCATGCCAGCATTGCAGCTGAGGTGTTCAAGTCATTGGCACCGATGATTCTTCTTCATAAATCGCAGGTGAGGATATTTGCGTTGAGTTTTGTGGGGAATCAGATGATGGGTGTGGCTAAGAATCTTGAGGGGGTGAAGAAAGCAATGGTGAATTTTCTGTGGTACTTGGTCCACAAGGCGCCGGATAAGTCTGAGCCTCGGGCTTTGGCTGTCGAGTCTATAATGGAGATTGTTAGAGTTATGGAGGTTCAGGAGCAAGTTGTGTTTGTGGAGTATGCGGTGAAGATGACTCAAGGGAAGGCTAGGTTGAGGCTTTTGGCTGTTGACCTTATTCTGGTGCTGGTTACATCTTTGAGAGATGTGATGGATTTGAATTCGGAGAGTGAAGTGAGGGATTCATTGGGTTGGAAATGCTTGGAGGGTTTGATTCAGCGCTGTTCGGATGCAATGGCTGGGATTCGAGCTCGTGCTTTGTCGAATTTGTCTCAGCTGGTTGGCTTCTTGTCAGGTGATGATAGGAGTCGGGAAGTGTTGAAAGAAGTTATGGGGTTTGGTGATGCAATGGATGAAAGGCAGGAGGGTTGGATGAATGAGATTTTGAGGGCAAGGTGTATGGATGAGAAGGCAGCTGTAAGGAAGGCTGCACTTCTTTTGGTTACCAAGTTGATGGCCATTCTTGGTAGTGGCTTTGATAGAGACTTGATCAAGACTATGGGCATGGCTTGTTCTGATCCACTTGTTAGCATACGCAAAGCAGCAATTTCAGCTCTTTCAGTGGCTTTTAGAACATTCCTGGATGATAGCGTGGCTACTGAGTGGCTACATTCTGTTCCAGCTTTAATAACTGATAATGAGTCTAGCATTCAAGAAGAATGTGAAAACTTGTTTGTAGAGCTGGTATTGGAAAGGGTATCTGCAGTTGGTTCTGAAATCAATACTGACTCAGTACTTCCTGAAGGCATTTTAAGCCTTTTGAAAGAGATTTGCAATGGAGAAGTGGCACCTTGGGTGAAGAAAATTTTAACAAACTTGGGAAAGAAGAATCGACTGAAGCACAAATTTGCTACTGCACTTCAGAGTATCATAAGGACATCTGAGTCTCTCTGGCTCAGTCAATCCATGCCTATAGAGAAATGGACAGCCCCACCAGGTTCTTGGTTTCTTCTGTCAGAGGTGTCAGCATACCTTGCAAAAGCAGTTGACTGGGAGTTTCTCCGTCATCATTGGCAGCTTTTTGACAAGCATGGAGGGGGAGGGGAGATTCAGAGTCCACTTCCACAGGGATATGCACATGAAGAGGGAGGGGGTATAGAATCCAGTTCTGTTGCTTGGGCTGGGGATCGTGTTTTTCTCTTACAGACTATTTCTAATGTATCTGTTGAGCTGCCTTCTGAAGTTGGTGCAGAGTTAGCTCATGACTTGCTTAAAAGAATTGAAAATTTTAACATGCATTCAACAGAGGTTAATGCTCATGTAAAAGCACTCAGAACATTGTGCAAGCGGAAGGTTTCAGATCCAGAGCAGGCTGATACACTTGTTAAAAGATGCGTACATCAGATTGCCTCAAAAGCTTCCAAGATATTAGATAAGTATATATCCAAGGAGTCAAATACAACCCGAAAAGGTGGCTTCTTTACGCCACCTATAAGTGGGAGTAGAATGGGCAAGAGAGCCATAACCATGTCCAAGTCTTTGTCAAAAGTAGTGACAGCAGTCTATACAATTGGGTCTTTGGTTATTATTTGTCCATCTGCTGATATGAGCACCACCATTCCACTACTATATACCATCATCACTTCTGGGAATTCTGATCCAAAAGTCAATAAACTAGCAGGCTCTATCGGATCTCTAAAGCAGACAGCACCTTCTTTGTACATTCAAGCATGGTTGACTATGGGGAAGATTTGCCTTACAGATGAAAAAATTGCAAAGACTTATATTCCTCTCATTGTGCAGGAACTTGAAAAGAGTGATTGTGCAGCCCTTCGCAACAATCTGGTAGTTGTGATGGCAGATTTTTGCATTCGTCATACTTCTTTAGTTGATAGTTATATACCAAGGATCACAAAATGCCTCCGTGATCCATGCGAACTTGTAAGAAGGCAGACATTTATACTGCTCTCAAGATTGTTGCAGAGGGATTATGTGAAGTGGAGAGGAGTTCTTTTCCTGAGATTTCTCTTGTCACTTGTTGATGAGTCAGAAAAGATAAAGCAGCTTGCCACCTTTCTTTTCAGCAATATCTTGAAAGCTAAGGCGCCTCTTCTCGGATATAACAGTTTTGTAGAAGCAATTTTTGTTCTGAATGACTGCCGTGCCCACAAGGGACATACTGGTGCTCAGGGTTCACGAGCAGAGAGCCGCCTTTTTTCCATAAGGGGAAATGATGAAGCTTCGAGGTCTAGAAGAATGCACATCTATGTTTCTTTGCTGAAACAAATGGCTCCAGAGCACTTATTGCAAACGTTTGTAAAGTTATGTACAGAGATCCTTGCTGCAGCATCTGATGGCATGCTCAATATAGATGATATTACTGGGCAGGCTGTTCTGCAGGATGCTTTCCAAATTATTGCCTGCAAAGAAATCCGAATACCATCCAACCGTGGGTTATCATCTGACACTGGAGATATTGATGAAGAAGGTGGTGATAATGGTGGAGCAGCTGCTAAGGGAAGGGCAATAACTCAAGCACTGAAAAAGGGCCTCATCCAAAGCACAATACCCATCTTTATAGAGCTGAAGCGGCTATTGGAAAGCAAAAACAGCCCCCTTGTAGGCTCCCTCATGGAATGCCTCCGCATCATCCTCAAGGATTACAAAAATGAGATCGAAGACATATTAGTTGCTGATAAGCAGCTCCAGAAAGAGCTGATATATGACATGCAGAAGTATGAAAAGGCAAAGGTCAAGTCTACAGCTGCCGAGACTGTTGCCAACCATCAAAGAACAGTTAGCTTCAACTCTCCCGGTATATCCAAGATTGCAAGTGTGAGACAGGCACATAACAAATCCATTGGCAGATTGCAAGGCGACGTGAGATTATCTTCAGCAATGGGAGATGTAGCTGCTGAAGCCATAGCAAGGTCAGTGCTCAAGGACATGAACAAGGGGAGACAGACACCACCTCTCAGCTCTTTAAGCGTGCCTAAGCTCAAGACCTGCCAGGGAGGGCAGAGCGCTCGAAGTGGTGTGCCCTTGGATGTATTAGAATCTGTGAGAAGAAGACAGAATTTTGACTTTGTTGAGGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

1363

Amino Acids

150.73

Weight (kDa)

8.88

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd1 PF12717 941 - 1115 1.1e-18 non-SMC mitotic condensation complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15890 AT4G15890
fragaria_vesca FvH4_4g18310
malus_domestica MD16G1167900.v1.1
prunus_persica Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1
pyrus_communis pycom16g14150
rosa_chinensis RchiOBHm_Chr4g0422791
rosa_laevigata RLG00000007605
rosa_multiflora Rmu_sc0000830.1_g000049
rosa_roxburghii Rroxscaffold_5G00364640
rosa_rugosa Rorug04G0181400
rosa_samantha Rh4AG241800 Rh4BG245200 Rh4CG255700 Rh4DG240400
rosa_wichuraiana Rw4G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AarI CACCTGC 1 cut(s) 892
AasI GACNNNNNNGTC 1 cut(s) 1933
Acc36I ACCTGC 2 cut(s) 892, 4004
AccB1I GGYRCC 4 cut(s) 874, 1015, 1837, 3094
AccI GTMKAC 1 cut(s) 3749
AccII CGCG 2 cut(s) 492, 536
AccIII TCCGGA 1 cut(s) 691
AclI AACGTT 1 cut(s) 3302
AcoI YGGCCR 2 cut(s) 537, 1506
AcuI CTGAAG 8 cut(s) 500, 1812, 1895, 1907, 2250, 3596, 3867, 3927
AcyI GRCGYC 2 cut(s) 1016, 3095
AfaI GTAC 5 cut(s) 1001, 1785, 2388, 2711, 3319
AfeI AGCGCT 2 cut(s) 1271, 4015
AflII CTTAAG 1 cut(s) 809
AjiI CACGTC 1 cut(s) 3871
AjnI CCWGG 3 cut(s) 1629, 1984, 3999
AjuI GAANNNNNNNTTGG 2 cut(s) 3569, 3601
Alw21I GWGCWC 8 cut(s) 156, 288, 797, 1303, 2603, 3178, 3291, 3930
Alw26I GTCTC 8 cut(s) 96, 828, 1326, 1527, 1941, 3755, 3823, 3943
AlwNI CAGNNNCTG 1 cut(s) 3341
Ama87I CYCGRG 1 cut(s) 1035
Aor13HI TCCGGA 1 cut(s) 691
Aor51HI AGCGCT 2 cut(s) 1271, 4015
AoxI GGCC 5 cut(s) 349, 354, 537, 1506, 3538
ArsI GACNNNNNNTTYG 2 cut(s) 3731, 3763
AspLEI GCGC 5 cut(s) 494, 1018, 1272, 3097, 4016
AspS9I GGNCC 7 cut(s) 268, 319, 350, 355, 525, 1006, 3538
AsuC2I CCSGG 3 cut(s) 353, 516, 3804
AsuHPI GGTGA 9 cut(s) 355, 916, 982, 997, 1129, 1358, 1403, 1858, 3494
AvaI CYCGRG 1 cut(s) 1035
AvaII GGWCC 4 cut(s) 268, 319, 525, 1006
BaeGI GKGCMC 2 cut(s) 3157, 4032
BaeI ACNNNNGTAYC 2 cut(s) 2358, 2391
BalI TGGCCA 1 cut(s) 1508
BamHI GGATCC 1 cut(s) 70
BanI GGYRCC 4 cut(s) 874, 1015, 1837, 3094
BanII GRGCYC 4 cut(s) 156, 288, 516, 1303
BauI CACGAG 2 cut(s) 1302, 3186
BbsI GAAGAC 3 cut(s) 165, 3675, 4066
Bbv12I GWGCWC 8 cut(s) 156, 288, 797, 1303, 2603, 3178, 3291, 3930
BbvCI CCTCAGC 1 cut(s) 855
BceAI ACGGC 2 cut(s) 523, 3135
BcgI CGANNNNNNTGC 4 cut(s) 3749, 3783, 3998, 4032
BciT130I CCWGG 3 cut(s) 1631, 1986, 4001
BclI TGATCA 1 cut(s) 1539
BcnI CCSGG 3 cut(s) 353, 516, 3804
BcoDI GTCTC 8 cut(s) 96, 828, 1326, 1527, 1941, 3755, 3823, 3943
BfaI CTAG 6 cut(s) 543, 798, 1140, 1695, 2666, 3240
BfmI CTRYAG 5 cut(s) 1752, 1962, 3333, 3386, 3750
BfoI RGCGCY 4 cut(s) 1019, 1273, 3098, 4017
BfrI CTTAAG 1 cut(s) 809
BfuAI ACCTGC 2 cut(s) 892, 4004
BmcAI AGTACT 1 cut(s) 1785
Bme1390I CCNGG 6 cut(s) 353, 516, 1631, 1986, 3804, 4001
Bme18I GGWCC 4 cut(s) 268, 319, 525, 1006
BmeT110I CYCGRG 1 cut(s) 1035
BmgBI CACGTC 1 cut(s) 3871
BmgT120I GGNCC 7 cut(s) 268, 319, 350, 355, 525, 1006, 3538
BmiI GGNNCC 8 cut(s) 72, 526, 876, 1017, 1839, 3096, 3282, 3616
BmrFI CCNGG 6 cut(s) 353, 516, 1631, 1986, 3804, 4001
BmrI ACTGGG 3 cut(s) 531, 2050, 3381
BmsI GCATC 6 cut(s) 1270, 1384, 2372, 3347, 3382, 3645
BmuI ACTGGG 3 cut(s) 531, 2050, 3381
BoxI GACNNNNGTC 1 cut(s) 2549
BpiI GAAGAC 3 cut(s) 165, 3675, 4066
BpmI CTGGAG 4 cut(s) 443, 3267, 3480, 3680
Bpu10I CCTNAGC 7 cut(s) 84, 825, 855, 3090, 3177, 3504, 3984
BpuEI CTTGAG 7 cut(s) 983, 1113, 2944, 3507, 3629, 3914, 3974
BpuMI CCSGG 3 cut(s) 353, 516, 3804
BsaHI GRCGYC 2 cut(s) 1016, 3095
BsaI GGTCTC 1 cut(s) 828
BsaWI WCCGGW 2 cut(s) 527, 691
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 8 cut(s) 460, 526, 734, 2045, 2154, 3175, 3376, 3463
Bse3DI GCAATG 6 cut(s) 846, 987, 1290, 1404, 1831, 3894
BseAI TCCGGA 1 cut(s) 691
BseBI CCWGG 3 cut(s) 1631, 1986, 4001
BseMI GCAATG 6 cut(s) 846, 987, 1290, 1404, 1831, 3894
BseNI ACTGG 8 cut(s) 460, 526, 734, 2045, 2154, 3175, 3376, 3463
BseRI GAGGAG 4 cut(s) 386, 389, 446, 3009
BseSI GKGCMC 2 cut(s) 3157, 4032
BseX3I CGGCCG 1 cut(s) 537
BseYI CCCAGC 2 cut(s) 1289, 2171
BsgI GTGCAG 6 cut(s) 406, 1464, 1890, 2259, 2810, 2835
Bsh1236I CGCG 2 cut(s) 492, 536
Bsh1285I CGRYCG 2 cut(s) 476, 540
BshFI GGCC 5 cut(s) 351, 356, 539, 1508, 3540
BshNI GGYRCC 4 cut(s) 874, 1015, 1837, 3094
BsiEI CGRYCG 2 cut(s) 476, 540
BsiHKAI GWGCWC 8 cut(s) 156, 288, 797, 1303, 2603, 3178, 3291, 3930
BsiHKCI CYCGRG 1 cut(s) 1035
BsiSI CCGG 8 cut(s) 348, 353, 472, 516, 528, 692, 1019, 3804
BslFI GGGAC 2 cut(s) 283, 3177
BsmAI GTCTC 8 cut(s) 96, 828, 1326, 1527, 1941, 3755, 3823, 3943
BsmFI GGGAC 2 cut(s) 283, 3177
BsmI GAATGC 5 cut(s) 1698, 2287, 2859, 3252, 3632
BsnI GGCC 5 cut(s) 351, 356, 539, 1508, 3540
Bso31I GGTCTC 1 cut(s) 828
BsoBI CYCGRG 1 cut(s) 1035
Bsp13I TCCGGA 1 cut(s) 691
Bsp1407I TGTACA 2 cut(s) 2709, 3317
Bsp19I CCATGG 2 cut(s) 339, 438
BspANI GGCC 5 cut(s) 351, 356, 539, 1508, 3540
BspEI TCCGGA 1 cut(s) 691
BspFNI CGCG 2 cut(s) 492, 536
BspHI TCATGA 1 cut(s) 2251
BspLI GGNNCC 8 cut(s) 72, 526, 876, 1017, 1839, 3096, 3282, 3616
BspMAI CTGCAG 3 cut(s) 1756, 3337, 3390
BspMI ACCTGC 2 cut(s) 892, 4004
BspT107I GGYRCC 4 cut(s) 874, 1015, 1837, 3094
BspTI CTTAAG 1 cut(s) 809
BspTNI GGTCTC 1 cut(s) 828
BsrDI GCAATG 6 cut(s) 846, 987, 1290, 1404, 1831, 3894
BsrFI RCCGGY 1 cut(s) 471
BsrGI TGTACA 2 cut(s) 2709, 3317
BsrI ACTGG 8 cut(s) 460, 526, 734, 2045, 2154, 3175, 3376, 3463
BssAI RCCGGY 1 cut(s) 471
BssNI GRCGYC 2 cut(s) 1016, 3095
BssSI CACGAG 2 cut(s) 1302, 3186
BssT1I CCWWGG 6 cut(s) 339, 438, 1841, 2436, 2894, 4032
Bst2BI CACGAG 2 cut(s) 1302, 3186
Bst2UI CCWGG 3 cut(s) 1631, 1986, 4001
Bst4CI ACNGT 6 cut(s) 587, 721, 3116, 3440, 3766, 3787
Bst6I CTCTTC 4 cut(s) 245, 600, 2127, 3105
BstACI GRCGYC 2 cut(s) 1016, 3095
BstAFI CTTAAG 1 cut(s) 809
BstAPI GCANNNNNTGC 2 cut(s) 2024, 3295
BstAUI TGTACA 2 cut(s) 2709, 3317
BstDSI CCRYGG 5 cut(s) 264, 339, 438, 720, 3439
BstEII GGTNACC 1 cut(s) 1492
BstFNI CGCG 2 cut(s) 492, 536
BstH2I RGCGCY 4 cut(s) 1019, 1273, 3098, 4017
BstHHI GCGC 5 cut(s) 494, 1018, 1272, 3097, 4016
BstMAI GTCTC 8 cut(s) 96, 828, 1326, 1527, 1941, 3755, 3823, 3943
BstMCI CGRYCG 2 cut(s) 476, 540
BstNI CCWGG 3 cut(s) 1631, 1986, 4001
BstNSI RCATGY 3 cut(s) 2287, 3352, 3721
BstPAI GACNNNNGTC 1 cut(s) 2549
BstPI GGTNACC 1 cut(s) 1492
BstSCI CCNGG 6 cut(s) 351, 514, 1629, 1984, 3802, 3999
BstSFI CTRYAG 5 cut(s) 1752, 1962, 3333, 3386, 3750
BstSLI GKGCMC 2 cut(s) 3157, 4032
BstUI CGCG 2 cut(s) 492, 536
BstV2I GAAGAC 3 cut(s) 165, 3675, 4066
BstX2I RGATCY 4 cut(s) 70, 2350, 2681, 3324
BstXI CCANNNNNNTGG 2 cut(s) 1504, 1992
BstYI RGATCY 4 cut(s) 70, 2350, 2681, 3324
BstZI CGGCCG 1 cut(s) 537
BsuRI GGCC 5 cut(s) 351, 356, 539, 1508, 3540
BtgI CCRYGG 5 cut(s) 264, 339, 438, 720, 3439
BtgZI GCGATG 1 cut(s) 313
BtrI CACGTC 1 cut(s) 3871
BtsIMutI CAGTG 6 cut(s) 519, 592, 1617, 3456, 3527, 3930
BveI ACCTGC 2 cut(s) 892, 4004
CaiI CAGNNNCTG 1 cut(s) 3341
CciI TCATGA 1 cut(s) 2251
CciNI GCGGCCGC 1 cut(s) 537
CfoI GCGC 5 cut(s) 494, 1018, 1272, 3097, 4016
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 7 cut(s) 268, 319, 350, 355, 525, 1006, 3538
CsiI ACCWGGT 1 cut(s) 1984
Csp6I GTAC 5 cut(s) 1000, 1784, 2387, 2710, 3318
CviQI GTAC 5 cut(s) 1000, 1784, 2387, 2710, 3318
DinI GGCGCC 2 cut(s) 1017, 3096
DrdI GACNNNNNNGTC 1 cut(s) 1933
DseDI GACNNNNNNGTC 1 cut(s) 1933
EaeI YGGCCR 2 cut(s) 537, 1506
EagI CGGCCG 1 cut(s) 537
Eam1104I CTCTTC 4 cut(s) 245, 600, 2127, 3105
EarI CTCTTC 4 cut(s) 245, 600, 2127, 3105
EciI GGCGGA 3 cut(s) 155, 311, 361
Ecl136II GAGCTC 3 cut(s) 154, 286, 1301
EclXI CGGCCG 1 cut(s) 537
Eco130I CCWWGG 6 cut(s) 339, 438, 1841, 2436, 2894, 4032
Eco24I GRGCYC 4 cut(s) 156, 288, 516, 1303
Eco31I GGTCTC 1 cut(s) 828
Eco47I GGWCC 4 cut(s) 268, 319, 525, 1006
Eco47III AGCGCT 2 cut(s) 1271, 4015
Eco52I CGGCCG 1 cut(s) 537
Eco53kI GAGCTC 3 cut(s) 154, 286, 1301
Eco57I CTGAAG 8 cut(s) 500, 1812, 1895, 1907, 2250, 3596, 3867, 3927
Eco88I CYCGRG 1 cut(s) 1035
Eco91I GGTNACC 1 cut(s) 1492
EcoICRI GAGCTC 3 cut(s) 154, 286, 1301
EcoO109I RGGNCCY 1 cut(s) 3538
EcoO65I GGTNACC 1 cut(s) 1492
EcoRI GAATTC 2 cut(s) 1210, 2641
EcoRII CCWGG 3 cut(s) 1629, 1984, 3999
EcoT14I CCWWGG 6 cut(s) 339, 438, 1841, 2436, 2894, 4032
EcoT22I ATGCAT 1 cut(s) 2289
EcoT38I GRGCYC 4 cut(s) 156, 288, 516, 1303
EgeI GGCGCC 2 cut(s) 1017, 3096
EheI GGCGCC 2 cut(s) 1017, 3096
ErhI CCWWGG 6 cut(s) 339, 438, 1841, 2436, 2894, 4032
FaqI GGGAC 2 cut(s) 283, 3177
FauI CCCGC 1 cut(s) 28
FbaI TGATCA 1 cut(s) 1539
FblI GTMKAC 1 cut(s) 3749
FriOI GRGCYC 4 cut(s) 156, 288, 516, 1303
FspBI CTAG 6 cut(s) 543, 798, 1140, 1695, 2666, 3240
GlaI GCGC 5 cut(s) 493, 1017, 1271, 3096, 4015
GsaI CCCAGC 2 cut(s) 1293, 2175
GsuI CTGGAG 4 cut(s) 443, 3267, 3480, 3680
HaeII RGCGCY 4 cut(s) 1019, 1273, 3098, 4017
HaeIII GGCC 5 cut(s) 351, 356, 539, 1508, 3540
HapII CCGG 8 cut(s) 348, 353, 472, 516, 528, 692, 1019, 3804
HhaI GCGC 5 cut(s) 494, 1018, 1272, 3097, 4016
Hin1I GRCGYC 2 cut(s) 1016, 3095
Hin6I GCGC 5 cut(s) 492, 1016, 1270, 3095, 4014
HinP1I GCGC 5 cut(s) 492, 1016, 1270, 3095, 4014
HincII GTYRAC 3 cut(s) 1162, 2038, 2727
HindII GTYRAC 3 cut(s) 1162, 2038, 2727
HindIII AAGCTT 2 cut(s) 2406, 3228
HpaII CCGG 8 cut(s) 348, 353, 472, 516, 528, 692, 1019, 3804
HphI GGTGA 9 cut(s) 355, 916, 982, 997, 1129, 1358, 1403, 1858, 3494
Hpy166II GTNNAC 8 cut(s) 268, 1009, 1162, 2038, 2108, 2727, 3185, 3750
Hpy8I GTNNAC 8 cut(s) 268, 1009, 1162, 2038, 2108, 2727, 3185, 3750
Hpy99I CGWCG 1 cut(s) 3872
HpyCH4III ACNGT 6 cut(s) 587, 721, 3116, 3440, 3766, 3787
HpyCH4IV ACGT 2 cut(s) 3302, 3870
HpySE526I ACGT 2 cut(s) 3302, 3870
Hsp92I GRCGYC 2 cut(s) 1016, 3095
HspAI GCGC 5 cut(s) 492, 1016, 1270, 3095, 4014
KasI GGCGCC 2 cut(s) 1015, 3094
Kpn2I TCCGGA 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 1539
LmnI GCTCC 5 cut(s) 1090, 3286, 3494, 3620, 3699
LweI GCATC 6 cut(s) 1270, 1384, 2372, 3347, 3382, 3645
MabI ACCWGGT 1 cut(s) 1984
MaeI CTAG 6 cut(s) 543, 798, 1140, 1695, 2666, 3240
MaeII ACGT 2 cut(s) 3302, 3870
MaeIII GTNAC 7 cut(s) 145, 503, 530, 1180, 1492, 2542, 3021
MfeI CAATTG 1 cut(s) 2559
MflI RGATCY 4 cut(s) 70, 2350, 2681, 3324
MlsI TGGCCA 1 cut(s) 1508
MluNI TGGCCA 1 cut(s) 1508
Mly113I GGCGCC 2 cut(s) 1016, 3095
MmeI TCCRAC 5 cut(s) 249, 303, 1223, 1400, 3459
Mox20I TGGCCA 1 cut(s) 1508
Mph1103I ATGCAT 1 cut(s) 2289
MroI TCCGGA 1 cut(s) 691
MscI TGGCCA 1 cut(s) 1508
MslI CAYNNNNRTG 4 cut(s) 437, 2516, 3171, 3255
Msp20I TGGCCA 1 cut(s) 1508
MspA1I CMGCKG 5 cut(s) 854, 1327, 1466, 3500, 3755
MspCI CTTAAG 1 cut(s) 809
MspI CCGG 8 cut(s) 348, 353, 472, 516, 528, 692, 1019, 3804
MspR9I CCNGG 6 cut(s) 353, 516, 1631, 1986, 3804, 4001
MunI CAATTG 1 cut(s) 2559
Mva1269I GAATGC 5 cut(s) 1698, 2287, 2859, 3252, 3632
MvaI CCWGG 3 cut(s) 1631, 1986, 4001
MvnI CGCG 2 cut(s) 492, 536
NarI GGCGCC 2 cut(s) 1016, 3095
NciI CCSGG 3 cut(s) 353, 516, 3804
NcoI CCATGG 2 cut(s) 339, 438
NlaIV GGNNCC 8 cut(s) 72, 526, 876, 1017, 1839, 3096, 3282, 3616
NmeAIII GCCGAG 1 cut(s) 3784
NmuCI GTSAC 4 cut(s) 145, 503, 2542, 3021
NotI GCGGCCGC 1 cut(s) 537
NsiI ATGCAT 1 cut(s) 2289
NspI RCATGY 3 cut(s) 2287, 3352, 3721
PaeI GCATGC 1 cut(s) 3352
PagI TCATGA 1 cut(s) 2251
PaqCI CACCTGC 1 cut(s) 892
PctI GAATGC 5 cut(s) 1698, 2287, 2859, 3252, 3632
PfoI TCCNGGA 1 cut(s) 1629
PluTI GGCGCC 2 cut(s) 1019, 3098
PshAI GACNNNNGTC 1 cut(s) 2549
PsiI TTATAA 1 cut(s) 774
Psp124BI GAGCTC 3 cut(s) 156, 288, 1303
Psp1406I AACGTT 1 cut(s) 3302
Psp6I CCWGG 3 cut(s) 1629, 1984, 3999
PspEI GGTNACC 1 cut(s) 1492
PspFI CCCAGC 2 cut(s) 1289, 2171
PspGI CCWGG 3 cut(s) 1629, 1984, 3999
PspN4I GGNNCC 8 cut(s) 72, 526, 876, 1017, 1839, 3096, 3282, 3616
PspPI GGNCC 7 cut(s) 268, 319, 350, 355, 525, 1006, 3538
PstI CTGCAG 3 cut(s) 1756, 3337, 3390
PstNI CAGNNNCTG 1 cut(s) 3341
PsuI RGATCY 4 cut(s) 70, 2350, 2681, 3324
PvuII CAGCTG 5 cut(s) 854, 1327, 1466, 3500, 3755
RsaI GTAC 5 cut(s) 1001, 1785, 2388, 2711, 3319
RsaNI GTAC 5 cut(s) 1000, 1784, 2387, 2710, 3318
RseI CAYNNNNRTG 4 cut(s) 437, 2516, 3171, 3255
SacI GAGCTC 3 cut(s) 156, 288, 1303
Sau96I GGNCC 7 cut(s) 268, 319, 350, 355, 525, 1006, 3538
ScaI AGTACT 1 cut(s) 1785
ScrFI CCNGG 6 cut(s) 353, 516, 1631, 1986, 3804, 4001
SexAI ACCWGGT 1 cut(s) 1984
SfaNI GCATC 6 cut(s) 1270, 1384, 2372, 3347, 3382, 3645
SfcI CTRYAG 5 cut(s) 1752, 1962, 3333, 3386, 3750
SfoI GGCGCC 2 cut(s) 1017, 3096
SinI GGWCC 4 cut(s) 268, 319, 525, 1006
SmiMI CAYNNNNRTG 4 cut(s) 437, 2516, 3171, 3255
SmlI CTYRAG 8 cut(s) 809, 962, 1128, 2959, 3522, 3644, 3929, 3989
SmoI CTYRAG 8 cut(s) 809, 962, 1128, 2959, 3522, 3644, 3929, 3989
SphI GCATGC 1 cut(s) 3352
SspDI GGCGCC 2 cut(s) 1015, 3094
SspMI CTAG 6 cut(s) 543, 798, 1140, 1695, 2666, 3240
SstI GAGCTC 3 cut(s) 156, 288, 1303
StyD4I CCNGG 6 cut(s) 351, 514, 1629, 1984, 3802, 3999
StyI CCWWGG 6 cut(s) 339, 438, 1841, 2436, 2894, 4032
TaaI ACNGT 6 cut(s) 587, 721, 3116, 3440, 3766, 3787
TaiI ACGT 2 cut(s) 3305, 3873
TatI WGTACW 3 cut(s) 1783, 2709, 3317
TauI GCSGC 7 cut(s) 293, 338, 492, 539, 542, 3201, 3583
TscAI CASTG 6 cut(s) 526, 592, 1617, 3463, 3534, 3930
TseFI GTSAC 4 cut(s) 145, 503, 2542, 3021
Tsp45I GTSAC 4 cut(s) 145, 503, 2542, 3021
TspGWI ACGGA 2 cut(s) 2042, 2903
TspRI CASTG 6 cut(s) 526, 592, 1617, 3463, 3534, 3930
Vha464I CTTAAG 1 cut(s) 809
VpaK11BI GGWCC 4 cut(s) 268, 319, 525, 1006
XbaI TCTAGA 1 cut(s) 3239
XceI RCATGY 3 cut(s) 2287, 3352, 3721
XcmI CCANNNNNNNNNTGG 2 cut(s) 118, 1989
XmiI GTMKAC 1 cut(s) 3749
XspI CTAG 6 cut(s) 543, 798, 1140, 1695, 2666, 3240
ZrmI AGTACT 1 cut(s) 1785
Zsp2I ATGCAT 1 cut(s) 2289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.