Rh4DG240400

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012287
Physical Location & Seq
Forward (+)
44904772 .. 44910721
5950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG240400.1

Sequence Viewer

Length: 3753 bp
ATGGATTCCGGCCCGGCCCATTTCACCCTCTCCGCCTCCAAGCTCTACCTCTCTCTCCTCCTCTCCCCCAATTCCCCCGTCTGCACTCTCTTCACCCCCATGGCGTTCTTCTCTCTCCTCCAGTCGATTCGCCGGTCGCTGAAGCCCCGCCGCGCCGAATCGGGTCACGGCGAGCCCGGCACGGGGTCCGGTAACGCGGCCGCTAGGAAGCGGAAGGGGAGAGGCAAAGGTAAGGGTTTGAAGAACAGTGAGGATTGCGAGAGCGAAGAGAGGGAGTTTGATGTTAGGGTTTTGTTTTCGGTGCTTGAAAAATTGGAACTTGTGATGGATTTGGTTCATTTGGATCGGTTTCCAGATAGTTTGAAGTCTTTGGTTCAAACCGTGGCTGAAATTCCAGTCATGGGGTTTGAGGTGTGTGGCAATTCTGGTAATTATAACAAATTGACTGATTTGTGCTCTAGGGTTTTGCTTAAGGTGTTCAAGCCTGAGCATGGAGACCATGCGAGCATTGCAGCTGAGGTGTTCAAGTCATTGGCACCGATGATTCTTCTGCATAAATCGCAGGTGAGGATATTTGCGTTGAGTTTTGTGGGGAATCAGATGATGGGTGTGGCTAAGAATCTTGAGGGGGTGAAGAAAGCAATGGTGAATTTTCTGTGGTACTTGGTCCACAAGGCGCCGGATAAGTCTGAGCCTCGGGCTTTGGCTGTCGAGTCTATAATGGAGATTGTTAGAGTTATGGAGGTTCAGGAGCAAGTTGTGTTTGTGGAGTATGCGGTGAAGATGACTCAAGGGAAGGCTAGGTTGAGGCTTTTGGCTGTTGACCTTATTCTGGTGCTGGTTACGTCTTTCAGAGATGTGATGGATTTGGATTCGGAGAGTCAAGTGAGGGATTCGTTGGGTTGGAAATGCTTGGAGGGTTTGATTCAGCGCTGTTCGGATGCAATGGCTGGGATTCGAGCTCGTGCTTTGTCGAATTTGTCTCAGCTGGTTGGCTTCTTGTCAGGTGATGATAGGAGCCGGGAAGTGTTGAAAGAAGTTATGGGGTTTGGTGATGCAATGGATGAAAGGCAGGAGGGTTGGATGAATGAGATTTTGAGGGCAAGGTGTATGGATGAGAAGGCAGCTGTAAGGAAGGCTGCACTTCTTTTGGTTACCAAGTTGATGGCCATTCTTGGTAGTGGCTTTGATAGAGACTTGATCAAGACTATGGGCATGGCTTGTTCTGATCCACTTGTTAGCATACGCAAAGCGGCAATTTCAGCTCTTTCAGTGGCTTTTAGAACATTCCTGGATGATAGCGTGGCTACTGAGTGGCTACATTCTGTTCCAGCTTTAATAACTGATAATGAGTCTAGCATTCAAGAAGAATGTGAAAACTTGTTTGTAGAGCTGGTATTGGAAAGGGTATCTGCAGTTGGTTCTGAAATCAATACTGACTCAGTACTTCCTGAAGGCATTTTAAGCCTTTTGCAAGAGATTTGTAATGGAGAAGTGGCACCTTGGGTGAAGAAAATTTTAACAAACCTGGGAAAGAAGAATCGACTGAAGCACAAATTTGCTACTGCACTTCAGAGTATCATAAGGACATCTGAGTCTCTCTGGCTCAGTCAATCCATGCCTATAGAGAAATGGACAGCCCCACCAGGTTCTTGGTTTCTTCTGTCAGAGGTGTCAGCATACCTTGCAAAAGCAGTTGACTGGGAGTTTCTCCGTCATCATTGGCAGCTTTTTGACAAGCATGGAGTGGGAGGGGAGATTCAGAGTCCACTTCCACAGGGATACGCACATGAAGAGGGAGGGGGTATAGAATCCAGTTCTGTTGCTTGGGCTGGGGATCGTGTTTTTCTCTTACAGACTATTTCTAATGTATCTGTTGAGCTGCCTTCTGAAGTTGGTGCAGAGTTAGCTCATGACTTGCTTAAAAGAATTGAAAATTTTAACATGCATTCAACAGAGGTTAATGCTCATGTAAAAGCACTCAGAACATTGTGCAAGCGGAAGGTTTCAGATCCAGAGCAGGCTGATACACTTGTTAAAAGATGCGTACATCAGATTGCCTCAAAAGCTTCCAAGATATTAGATAAGTATATATCCAAGGAGTCAAATACAACCCGAAAAGGTGGCTTCTTTACGCCACCTATAAGTGGGAGTAGAATGGGCAAGAGAGCCATAACCATGTCCAAGTCTTTGTCAAAAGTAGTGACAGCAGTCTATACAATTGGGTCTTTGGTTATTATTTGTCCATCTGCTGATATGAGCACCACCATTCCACTAATATATACCATCATCACTTCTGGGAATTCTGATCCAAAAGTCAATAAACTAGCAGGCTCTATAGGATCTCTAAAGCAGACAGCACCTTCTTTGTACATTCAAGCATGGTTGACTATGGGGAAGATTTGCCTTACAGATGAAAAAATTGCAAAGACTTATATTCCTCTCTTTGTGCAGGAACTTGAAAAGAGTGATTGTGCAGCCCTTCGCAACAATCTGGTAGTTGTGATGGCAGATTTTTGCATTCGTCATACTTCTTTAGTTGATAGTTATATACCAAGGATCACAAAATGCCTCCGTGATCCATGCGAACTTGTAAGAAGGCAGACATTTATACTGCTCTCAAGATTGTTGCAGAGGGATTATGTGAAGTGGAGAGGAGTTCTTTTCCTGAGATTTCTCTTGTCACTTGTTGATGAGTCAGAAAAGATAAAGCAGCTCGCCTCCTTTCTTTTCAGCAATATCTTGAAAGCTAAGGCGCCTCTTCTTGGATATAACAGCTTTGTAGAAGCAATTTTTGTTCTGAATGACTGCCGTGCCCACAAGGGACATACTGGTGCTCAGGGTTCACGAGCAGAGAGCCGCCTTTTTTCCATTAGGGGAAATGATGAAGCTTCGAGGTCTAGAAGAATGCACATCTATGTTTCTTTGCTGAAACAAATGGCTCCAGAGCACTTATTGCAAACGTTTGTAAAGTTATGTACAGAGATCCTTGCTGCAGCATCTGATGGCATGCTCAATATAGATGATATTACTGGGCAGGCTGTTCTGCAGGATGCTTTCCAAATTATTGCCTGCAAAGAAATCCGAATACCATCCAACCGTGGGTTATCATCTGACACTGGAGATATTGATGAAGAAGGTGGTGATAATGGTGGAGCAGCTGCTAAGGGAAGGGCAATAACTCAAGCACTGAAAAAGGGCCTCATCCAAAGCACAATACCCATCTTTATAGAGCTGAAGCGGCTATTGGAAAGCAAAAACAGCCCCCTTGTAGGCTCCCTCATGGAATGCCTCCGCATCATCCTCAAGGATTACAAAAATGAGATCGAGGATATATTAGTTGCTGATAAGCAGCTCCAGAAAGAGCTGATATATGACATGCAGAAGTATGAAAAGGCAAAGGTCAAGTCTACAGCTGCCGAGACTGTTGCCAACCATCAAAGAACAGTTAGCTTCAACTCTCCCGGTATATCCAAGATTGCAAGCGTGAGACAGGCACATAACAAATCCATTGGCAGATTGCAAGGCGACGTGAGATTATCTTCGGCAATGGGAGATGTAGCTGCTGAAGCCATAGCAAGGTCAGTGCTCAAGGACATGAACAAGGGGAGACAGACACCACCTCTCAGCTCTTTAAGCGTGCCTAAGCTCAAGACCTGCGAGGGAGGGCAGAGCTCTCGAAGTGGTGTGCCCTTGGATGTATTAGAATCTGTGAGAAGAAGACAGAATTTTGACTTTGTTGAGGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

1250

Amino Acids

138.19

Weight (kDa)

8.84

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd1 PF12717 828 - 1002 1.3e-18 non-SMC mitotic condensation complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15890 AT4G15890
fragaria_vesca FvH4_4g18310
malus_domestica MD16G1167900.v1.1
prunus_persica Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1
pyrus_communis pycom16g14150
rosa_chinensis RchiOBHm_Chr4g0422791
rosa_laevigata RLG00000007605
rosa_multiflora Rmu_sc0000830.1_g000049
rosa_roxburghii Rroxscaffold_5G00364640
rosa_rugosa Rorug04G0181400
rosa_samantha Rh4AG241800 Rh4BG245200 Rh4CG255700 Rh4DG240400
rosa_wichuraiana Rw4G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AarI CACCTGC 1 cut(s) 553
AasI GACNNNNNNGTC 1 cut(s) 1594
Acc36I ACCTGC 2 cut(s) 553, 3665
AccB1I GGYRCC 4 cut(s) 535, 676, 1498, 2755
AccI GTMKAC 1 cut(s) 3410
AccII CGCG 2 cut(s) 153, 197
AclI AACGTT 1 cut(s) 2963
AclWI GGATC 9 cut(s) 351, 1223, 1845, 2006, 2303, 2350, 2567, 2573, 2980
AcoI YGGCCR 2 cut(s) 198, 1167
AcsI RAATTY 8 cut(s) 390, 649, 976, 1515, 1556, 1936, 2302, 3727
AcuI CTGAAG 7 cut(s) 161, 1473, 1556, 1568, 1911, 3257, 3588
AcyI GRCGYC 2 cut(s) 677, 2756
AfaI GTAC 5 cut(s) 662, 1446, 2049, 2372, 2980
AfeI AGCGCT 1 cut(s) 932
AflII CTTAAG 1 cut(s) 470
AjiI CACGTC 1 cut(s) 3532
AjnI CCWGG 3 cut(s) 1290, 1527, 1645
AjuI GAANNNNNNNTTGG 2 cut(s) 3230, 3262
Alw21I GWGCWC 7 cut(s) 458, 964, 2264, 2839, 2952, 3591, 3677
Alw26I GTCTC 7 cut(s) 489, 987, 1188, 1602, 3416, 3484, 3604
AlwI GGATC 9 cut(s) 351, 1223, 1845, 2006, 2303, 2350, 2567, 2573, 2980
AlwNI CAGNNNCTG 1 cut(s) 3002
Ama87I CYCGRG 1 cut(s) 696
Aor51HI AGCGCT 1 cut(s) 932
AoxI GGCC 5 cut(s) 10, 15, 198, 1167, 3199
ApoI RAATTY 8 cut(s) 390, 649, 976, 1515, 1556, 1936, 2302, 3727
ArsI GACNNNNNNTTYG 2 cut(s) 3392, 3424
AspLEI GCGC 4 cut(s) 155, 679, 933, 2758
AspS9I GGNCC 5 cut(s) 11, 16, 186, 667, 3199
AsuC2I CCSGG 4 cut(s) 14, 177, 1022, 3465
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 2 cut(s) 186, 667
BaeGI GKGCMC 2 cut(s) 2818, 3693
BaeI ACNNNNGTAYC 2 cut(s) 2019, 2052
BalI TGGCCA 1 cut(s) 1169
BanI GGYRCC 4 cut(s) 535, 676, 1498, 2755
BanII GRGCYC 3 cut(s) 177, 964, 3677
BauI CACGAG 2 cut(s) 963, 2847
BbsI GAAGAC 1 cut(s) 3727
Bbv12I GWGCWC 7 cut(s) 458, 964, 2264, 2839, 2952, 3591, 3677
BbvCI CCTCAGC 1 cut(s) 516
BceAI ACGGC 2 cut(s) 184, 2796
BcgI CGANNNNNNTGC 4 cut(s) 3410, 3444, 3659, 3693
BciT130I CCWGG 3 cut(s) 1292, 1529, 1647
BciVI GTATCC 1 cut(s) 1775
BclI TGATCA 1 cut(s) 1200
BcnI CCSGG 4 cut(s) 14, 177, 1022, 3465
BcoDI GTCTC 7 cut(s) 489, 987, 1188, 1602, 3416, 3484, 3604
BfaI CTAG 6 cut(s) 204, 459, 801, 1356, 2327, 2901
BfmI CTRYAG 6 cut(s) 1413, 1623, 2337, 2994, 3047, 3411
BfoI RGCGCY 3 cut(s) 680, 934, 2759
BfrI CTTAAG 1 cut(s) 470
BfuAI ACCTGC 2 cut(s) 553, 3665
BfuI GTATCC 1 cut(s) 1775
BmcAI AGTACT 1 cut(s) 1446
Bme1390I CCNGG 7 cut(s) 14, 177, 1022, 1292, 1529, 1647, 3465
Bme18I GGWCC 2 cut(s) 186, 667
BmeT110I CYCGRG 1 cut(s) 696
BmgBI CACGTC 1 cut(s) 3532
BmgT120I GGNCC 5 cut(s) 11, 16, 186, 667, 3199
BmiI GGNNCC 8 cut(s) 187, 537, 678, 1019, 1500, 2757, 2943, 3277
BmrFI CCNGG 7 cut(s) 14, 177, 1022, 1292, 1529, 1647, 3465
BmrI ACTGGG 2 cut(s) 1711, 3042
BmsI GCATC 6 cut(s) 931, 1045, 2033, 3008, 3043, 3306
BmuI ACTGGG 2 cut(s) 1711, 3042
BoxI GACNNNNGTC 1 cut(s) 2210
BpiI GAAGAC 1 cut(s) 3727
BpmI CTGGAG 4 cut(s) 104, 2928, 3141, 3341
Bpu10I CCTNAGC 6 cut(s) 486, 516, 2751, 2838, 3165, 3645
BpuEI CTTGAG 7 cut(s) 644, 774, 2605, 3168, 3290, 3575, 3635
BpuMI CCSGG 4 cut(s) 14, 177, 1022, 3465
BsaHI GRCGYC 2 cut(s) 677, 2756
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 9 cut(s) 99, 381, 695, 1502, 1528, 2097, 2555, 3100, 3693
BsaWI WCCGGW 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 7 cut(s) 121, 395, 1706, 1815, 2836, 3037, 3124
Bse3DI GCAATG 5 cut(s) 507, 648, 951, 1065, 3555
BseBI CCWGG 3 cut(s) 1292, 1529, 1647
BseDI CCNNGG 9 cut(s) 99, 381, 695, 1502, 1528, 2097, 2555, 3100, 3693
BseMI GCAATG 5 cut(s) 507, 648, 951, 1065, 3555
BseNI ACTGG 7 cut(s) 121, 395, 1706, 1815, 2836, 3037, 3124
BseRI GAGGAG 4 cut(s) 47, 50, 107, 2670
BseSI GKGCMC 2 cut(s) 2818, 3693
BseX3I CGGCCG 1 cut(s) 198
BseYI CCCAGC 2 cut(s) 950, 1832
BsgI GTGCAG 6 cut(s) 67, 1125, 1551, 1920, 2471, 2496
Bsh1236I CGCG 2 cut(s) 153, 197
Bsh1285I CGRYCG 2 cut(s) 137, 201
BshFI GGCC 5 cut(s) 12, 17, 200, 1169, 3201
BshNI GGYRCC 4 cut(s) 535, 676, 1498, 2755
BsiEI CGRYCG 2 cut(s) 137, 201
BsiHKAI GWGCWC 7 cut(s) 458, 964, 2264, 2839, 2952, 3591, 3677
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 8 cut(s) 9, 14, 133, 177, 189, 680, 1021, 3465
BslFI GGGAC 1 cut(s) 2838
BsmAI GTCTC 7 cut(s) 489, 987, 1188, 1602, 3416, 3484, 3604
BsmFI GGGAC 1 cut(s) 2838
BsmI GAATGC 5 cut(s) 1359, 1948, 2520, 2913, 3293
BsnI GGCC 5 cut(s) 12, 17, 200, 1169, 3201
Bso31I GGTCTC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 696
Bsp1407I TGTACA 2 cut(s) 2370, 2978
Bsp19I CCATGG 1 cut(s) 99
BspANI GGCC 5 cut(s) 12, 17, 200, 1169, 3201
BspFNI CGCG 2 cut(s) 153, 197
BspHI TCATGA 1 cut(s) 1912
BspLI GGNNCC 8 cut(s) 187, 537, 678, 1019, 1500, 2757, 2943, 3277
BspMAI CTGCAG 3 cut(s) 1417, 2998, 3051
BspMI ACCTGC 2 cut(s) 553, 3665
BspPI GGATC 9 cut(s) 351, 1223, 1845, 2006, 2303, 2350, 2567, 2573, 2980
BspT107I GGYRCC 4 cut(s) 535, 676, 1498, 2755
BspTI CTTAAG 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 489
BsrDI GCAATG 5 cut(s) 507, 648, 951, 1065, 3555
BsrFI RCCGGY 1 cut(s) 132
BsrGI TGTACA 2 cut(s) 2370, 2978
BsrI ACTGG 7 cut(s) 121, 395, 1706, 1815, 2836, 3037, 3124
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 9 cut(s) 99, 381, 695, 1502, 1528, 2097, 2555, 3100, 3693
BssNI GRCGYC 2 cut(s) 677, 2756
BssSI CACGAG 2 cut(s) 963, 2847
BssT1I CCWWGG 5 cut(s) 99, 1502, 2097, 2555, 3693
Bst2BI CACGAG 2 cut(s) 963, 2847
Bst2UI CCWGG 3 cut(s) 1292, 1529, 1647
Bst4CI ACNGT 5 cut(s) 248, 382, 3101, 3427, 3448
Bst6I CTCTTC 4 cut(s) 95, 261, 1788, 2766
BstACI GRCGYC 2 cut(s) 677, 2756
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 2 cut(s) 1685, 2956
BstAUI TGTACA 2 cut(s) 2370, 2978
BstDSI CCRYGG 3 cut(s) 99, 381, 3100
BstEII GGTNACC 1 cut(s) 1153
BstFNI CGCG 2 cut(s) 153, 197
BstH2I RGCGCY 3 cut(s) 680, 934, 2759
BstHHI GCGC 4 cut(s) 155, 679, 933, 2758
BstMAI GTCTC 7 cut(s) 489, 987, 1188, 1602, 3416, 3484, 3604
BstMCI CGRYCG 2 cut(s) 137, 201
BstNI CCWGG 3 cut(s) 1292, 1529, 1647
BstNSI RCATGY 3 cut(s) 1948, 3013, 3382
BstPAI GACNNNNGTC 1 cut(s) 2210
BstPI GGTNACC 1 cut(s) 1153
BstSCI CCNGG 7 cut(s) 12, 175, 1020, 1290, 1527, 1645, 3463
BstSFI CTRYAG 6 cut(s) 1413, 1623, 2337, 2994, 3047, 3411
BstSLI GKGCMC 2 cut(s) 2818, 3693
BstUI CGCG 2 cut(s) 153, 197
BstV2I GAAGAC 1 cut(s) 3727
BstX2I RGATCY 3 cut(s) 2011, 2342, 2985
BstXI CCANNNNNNTGG 2 cut(s) 1165, 1653
BstYI RGATCY 3 cut(s) 2011, 2342, 2985
BstZI CGGCCG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 1775
BsuRI GGCC 5 cut(s) 12, 17, 200, 1169, 3201
BtgI CCRYGG 3 cut(s) 99, 381, 3100
BtrI CACGTC 1 cut(s) 3532
BtsIMutI CAGTG 5 cut(s) 253, 1278, 3117, 3188, 3591
BveI ACCTGC 2 cut(s) 553, 3665
CaiI CAGNNNCTG 1 cut(s) 3002
CciI TCATGA 1 cut(s) 1912
CciNI GCGGCCGC 1 cut(s) 198
CfoI GCGC 4 cut(s) 155, 679, 933, 2758
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 5 cut(s) 11, 16, 186, 667, 3199
CsiI ACCWGGT 1 cut(s) 1645
Csp6I GTAC 5 cut(s) 661, 1445, 2048, 2371, 2979
CviQI GTAC 5 cut(s) 661, 1445, 2048, 2371, 2979
DinI GGCGCC 2 cut(s) 678, 2757
DrdI GACNNNNNNGTC 1 cut(s) 1594
DseDI GACNNNNNNGTC 1 cut(s) 1594
EaeI YGGCCR 2 cut(s) 198, 1167
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 4 cut(s) 95, 261, 1788, 2766
EarI CTCTTC 4 cut(s) 95, 261, 1788, 2766
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 2 cut(s) 962, 3675
EclXI CGGCCG 1 cut(s) 198
Eco130I CCWWGG 5 cut(s) 99, 1502, 2097, 2555, 3693
Eco24I GRGCYC 3 cut(s) 177, 964, 3677
Eco31I GGTCTC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 186, 667
Eco47III AGCGCT 1 cut(s) 932
Eco52I CGGCCG 1 cut(s) 198
Eco53kI GAGCTC 2 cut(s) 962, 3675
Eco57I CTGAAG 7 cut(s) 161, 1473, 1556, 1568, 1911, 3257, 3588
Eco88I CYCGRG 1 cut(s) 696
Eco91I GGTNACC 1 cut(s) 1153
EcoICRI GAGCTC 2 cut(s) 962, 3675
EcoO109I RGGNCCY 1 cut(s) 3199
EcoO65I GGTNACC 1 cut(s) 1153
EcoRI GAATTC 1 cut(s) 2302
EcoRII CCWGG 3 cut(s) 1290, 1527, 1645
EcoT14I CCWWGG 5 cut(s) 99, 1502, 2097, 2555, 3693
EcoT22I ATGCAT 1 cut(s) 1950
EcoT38I GRGCYC 3 cut(s) 177, 964, 3677
EgeI GGCGCC 2 cut(s) 678, 2757
EheI GGCGCC 2 cut(s) 678, 2757
ErhI CCWWGG 5 cut(s) 99, 1502, 2097, 2555, 3693
FaqI GGGAC 1 cut(s) 2838
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 1 cut(s) 1200
FblI GTMKAC 1 cut(s) 3410
FriOI GRGCYC 3 cut(s) 177, 964, 3677
FspBI CTAG 6 cut(s) 204, 459, 801, 1356, 2327, 2901
GlaI GCGC 4 cut(s) 154, 678, 932, 2757
GsaI CCCAGC 2 cut(s) 954, 1836
GsuI CTGGAG 4 cut(s) 104, 2928, 3141, 3341
HaeII RGCGCY 3 cut(s) 680, 934, 2759
HaeIII GGCC 5 cut(s) 12, 17, 200, 1169, 3201
HapII CCGG 8 cut(s) 9, 14, 133, 177, 189, 680, 1021, 3465
HhaI GCGC 4 cut(s) 155, 679, 933, 2758
Hin1I GRCGYC 2 cut(s) 677, 2756
Hin6I GCGC 4 cut(s) 153, 677, 931, 2756
HinP1I GCGC 4 cut(s) 153, 677, 931, 2756
HincII GTYRAC 3 cut(s) 823, 1699, 2388
HindII GTYRAC 3 cut(s) 823, 1699, 2388
HindIII AAGCTT 2 cut(s) 2067, 2889
HpaII CCGG 8 cut(s) 9, 14, 133, 177, 189, 680, 1021, 3465
Hpy166II GTNNAC 7 cut(s) 670, 823, 1699, 1769, 2388, 2846, 3411
Hpy8I GTNNAC 7 cut(s) 670, 823, 1699, 1769, 2388, 2846, 3411
Hpy99I CGWCG 1 cut(s) 3533
HpyCH4III ACNGT 5 cut(s) 248, 382, 3101, 3427, 3448
HpyCH4IV ACGT 3 cut(s) 845, 2963, 3531
HpySE526I ACGT 3 cut(s) 845, 2963, 3531
Hsp92I GRCGYC 2 cut(s) 677, 2756
HspAI GCGC 4 cut(s) 153, 677, 931, 2756
KasI GGCGCC 2 cut(s) 676, 2755
Ksp22I TGATCA 1 cut(s) 1200
LmnI GCTCC 6 cut(s) 751, 1017, 2947, 3155, 3281, 3360
LweI GCATC 6 cut(s) 931, 1045, 2033, 3008, 3043, 3306
MabI ACCWGGT 1 cut(s) 1645
MaeI CTAG 6 cut(s) 204, 459, 801, 1356, 2327, 2901
MaeII ACGT 3 cut(s) 845, 2963, 3531
MaeIII GTNAC 6 cut(s) 164, 191, 841, 1153, 2203, 2682
MfeI CAATTG 1 cut(s) 2220
MflI RGATCY 3 cut(s) 2011, 2342, 2985
MlsI TGGCCA 1 cut(s) 1169
MluNI TGGCCA 1 cut(s) 1169
Mly113I GGCGCC 2 cut(s) 677, 2756
MlyI GAGTC 9 cut(s) 722, 781, 889, 1361, 1433, 1604, 1774, 2111, 2705
MmeI TCCRAC 3 cut(s) 884, 1061, 3120
Mox20I TGGCCA 1 cut(s) 1169
Mph1103I ATGCAT 1 cut(s) 1950
MscI TGGCCA 1 cut(s) 1169
MseI TTAA 9 cut(s) 471, 1337, 1463, 1520, 1923, 1941, 1962, 2037, 3635
MslI CAYNNNNRTG 4 cut(s) 98, 2177, 2832, 2916
Msp20I TGGCCA 1 cut(s) 1169
MspA1I CMGCKG 5 cut(s) 515, 988, 1127, 3161, 3416
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 8 cut(s) 9, 14, 133, 177, 189, 680, 1021, 3465
MspR9I CCNGG 7 cut(s) 14, 177, 1022, 1292, 1529, 1647, 3465
MunI CAATTG 1 cut(s) 2220
Mva1269I GAATGC 5 cut(s) 1359, 1948, 2520, 2913, 3293
MvaI CCWGG 3 cut(s) 1292, 1529, 1647
MvnI CGCG 2 cut(s) 153, 197
NarI GGCGCC 2 cut(s) 677, 2756
NciI CCSGG 4 cut(s) 14, 177, 1022, 3465
NcoI CCATGG 1 cut(s) 99
NlaIV GGNNCC 8 cut(s) 187, 537, 678, 1019, 1500, 2757, 2943, 3277
NmeAIII GCCGAG 1 cut(s) 3445
NmuCI GTSAC 3 cut(s) 164, 2203, 2682
NotI GCGGCCGC 1 cut(s) 198
NsiI ATGCAT 1 cut(s) 1950
NspI RCATGY 3 cut(s) 1948, 3013, 3382
PaeI GCATGC 1 cut(s) 3013
PagI TCATGA 1 cut(s) 1912
PaqCI CACCTGC 1 cut(s) 553
PctI GAATGC 5 cut(s) 1359, 1948, 2520, 2913, 3293
PfoI TCCNGGA 1 cut(s) 1290
PleI GAGTC 9 cut(s) 721, 781, 888, 1360, 1433, 1603, 1773, 2110, 2704
PluTI GGCGCC 2 cut(s) 680, 2759
PpsI GAGTC 9 cut(s) 721, 781, 888, 1360, 1433, 1603, 1773, 2110, 2704
PshAI GACNNNNGTC 1 cut(s) 2210
PsiI TTATAA 1 cut(s) 435
Psp124BI GAGCTC 2 cut(s) 964, 3677
Psp1406I AACGTT 1 cut(s) 2963
Psp6I CCWGG 3 cut(s) 1290, 1527, 1645
PspEI GGTNACC 1 cut(s) 1153
PspFI CCCAGC 2 cut(s) 950, 1832
PspGI CCWGG 3 cut(s) 1290, 1527, 1645
PspN4I GGNNCC 8 cut(s) 187, 537, 678, 1019, 1500, 2757, 2943, 3277
PspPI GGNCC 5 cut(s) 11, 16, 186, 667, 3199
PstI CTGCAG 3 cut(s) 1417, 2998, 3051
PstNI CAGNNNCTG 1 cut(s) 3002
PsuI RGATCY 3 cut(s) 2011, 2342, 2985
PvuII CAGCTG 5 cut(s) 515, 988, 1127, 3161, 3416
RsaI GTAC 5 cut(s) 662, 1446, 2049, 2372, 2980
RsaNI GTAC 5 cut(s) 661, 1445, 2048, 2371, 2979
RseI CAYNNNNRTG 4 cut(s) 98, 2177, 2832, 2916
SacI GAGCTC 2 cut(s) 964, 3677
SaqAI TTAA 9 cut(s) 471, 1337, 1463, 1520, 1923, 1941, 1962, 2037, 3635
Sau96I GGNCC 5 cut(s) 11, 16, 186, 667, 3199
ScaI AGTACT 1 cut(s) 1446
SchI GAGTC 9 cut(s) 722, 781, 889, 1361, 1433, 1604, 1774, 2111, 2705
ScrFI CCNGG 7 cut(s) 14, 177, 1022, 1292, 1529, 1647, 3465
SexAI ACCWGGT 1 cut(s) 1645
SfaNI GCATC 6 cut(s) 931, 1045, 2033, 3008, 3043, 3306
SfcI CTRYAG 6 cut(s) 1413, 1623, 2337, 2994, 3047, 3411
SfoI GGCGCC 2 cut(s) 678, 2757
SinI GGWCC 2 cut(s) 186, 667
SmiMI CAYNNNNRTG 4 cut(s) 98, 2177, 2832, 2916
SmlI CTYRAG 8 cut(s) 470, 623, 789, 2620, 3183, 3305, 3590, 3650
SmoI CTYRAG 8 cut(s) 470, 623, 789, 2620, 3183, 3305, 3590, 3650
SphI GCATGC 1 cut(s) 3013
SspDI GGCGCC 2 cut(s) 676, 2755
SspMI CTAG 6 cut(s) 204, 459, 801, 1356, 2327, 2901
SstI GAGCTC 2 cut(s) 964, 3677
StyD4I CCNGG 7 cut(s) 12, 175, 1020, 1290, 1527, 1645, 3463
StyI CCWWGG 5 cut(s) 99, 1502, 2097, 2555, 3693
TaaI ACNGT 5 cut(s) 248, 382, 3101, 3427, 3448
TaiI ACGT 3 cut(s) 848, 2966, 3534
TaqI TCGA 8 cut(s) 125, 711, 958, 974, 1543, 2894, 3327, 3679
TatI WGTACW 3 cut(s) 1444, 2370, 2978
TauI GCSGC 6 cut(s) 153, 200, 203, 1256, 2862, 3244
Tru1I TTAA 9 cut(s) 471, 1337, 1463, 1520, 1923, 1941, 1962, 2037, 3635
Tru9I TTAA 9 cut(s) 471, 1337, 1463, 1520, 1923, 1941, 1962, 2037, 3635
TscAI CASTG 5 cut(s) 253, 1278, 3124, 3195, 3591
TseFI GTSAC 3 cut(s) 164, 2203, 2682
Tsp45I GTSAC 3 cut(s) 164, 2203, 2682
TspDTI ATGAA 9 cut(s) 326, 1080, 1100, 1806, 2430, 2901, 3147, 3405, 3614
TspGWI ACGGA 2 cut(s) 1703, 2564
TspRI CASTG 5 cut(s) 253, 1278, 3124, 3195, 3591
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 186, 667
XapI RAATTY 8 cut(s) 390, 649, 976, 1515, 1556, 1936, 2302, 3727
XbaI TCTAGA 1 cut(s) 2900
XceI RCATGY 3 cut(s) 1948, 3013, 3382
XcmI CCANNNNNNNNNTGG 1 cut(s) 1650
XmiI GTMKAC 1 cut(s) 3410
XspI CTAG 6 cut(s) 204, 459, 801, 1356, 2327, 2901
ZrmI AGTACT 1 cut(s) 1446
Zsp2I ATGCAT 1 cut(s) 1950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.