Rh4BG245200

Condensin-2 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012287
Physical Location & Seq
Forward (+)
41226959 .. 41232790
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG245200.1

Sequence Viewer

Length: 3654 bp
ATGGCGTTCTTCTCTCTCCTCCAGTCGATTCGCCGGTCGCTGAAGCACCGCCGCGCCGAATCGGGACACGGCGAGCCCGGTACGGGTTCCGGTAACGCCGCCGCTAGGAAGCGGAAGGGGCGAGGCAAAGGTAAGGGTTTGAAGAACAGTGAGGATTGCGAGAGCGAAGAGAGGGAGTTTGATGTTAGGGTTTTGTTTTCGGTGCTTGAAAAATTGGAACTTGTGATGGATTTGGTTCATTTGGATCGGTTTCCGGATAGTTTGAAGTCGTTGGTTCAAACTGTGGCTGAAATTCCAGTCATGGGGTTTGAGGTGTGTGGCAATTCTGGTCATTATAACAAATTGACTGATTTGTGCTCTAGGGTTTTGCTTAAGGTGTTCAAGCCTGAGCATGGAGACCATGCCAGCATTGCAGCTGAGGTGTTCAAGTCATTGGCACCGATGATTCTTCTGCATAAATCGCAGGTGAGGATATTTGCGTTGAGTTTTGTGGGGAATCAGATGATGGGTGTGGCTAAGAATCTTGAGGGGGTGAAGAAAGCAATGGTGAATTTTCTGTGGTACTTGGTCCACAAGGCGCCGGATAAGTCTGAGCCTCGGGCTTTGGCTGTCGAGTCTATAATGGAGATTGTTAGAGTTATGGAGGTTCAGGAGCAAGTTGTGTTTGTGGAGTATGTGGTGAAGATGACTCAAGGGAAGGCCAGGTTGAGGCTTTTGGCTGTTGACCTTATTCTGGTGCTGGTTACATCTTTGAGAGATGTGATGGATTTGAATTCGGAGAGTGAAGTGAGGGATTCGTTGGGTTGGAAATGCTTGGAGGGTTTGATTCAGCGCAGTTCGGATGCAATGGCTGGGATTCGAGCTCGTGCTTTGTCGAATTTGTCTCAGCTGGTTGGCTTCTTGTCAGGTGATGATAGGAGCCGGGAAGTGTTGAAAGAAGTTATGGGATTTGGTGATGCAATGGATGAAAGGCAGGAGGGTTGGATGAATGAGATTTTGAGGGCAAGGTGTATGGATGAGAAGGCAGCTGTAAGGAAGGCTGCACTTCTTTTGGTTACCAAGTTGATGGCCATTCTTGGTAGTGGCTTTGATAGAGACTTGATCAAGACTATGGGCATGGCTTGTTCTGATCCACTTGTTAGCATACGCAAAGCGGCAATTTCAGCTCTTTCAGTGGCTTTTAGAACATTCCTGGATGATAGCGTGGCTACTGAGTGGCTACATTCTGTTCCAGCTTTAATAACTGATAATGAGTCTAGCATTCAAGAAGAATGTGAAAACTTGTTTGTAGAGCTGGTATTGGAAAGGGTATCTGCAGTTGGTTCTGAAATCAATACTGACTCAGTACTTCCTGAAGGCATTTTAAGCCTTTTGAAAGAGATTTGCAATGGAGAAGTGGCACCTTGGGTGAAGAAAATTTTAACAAACTTGGGAAAGAAGAATCGACTGAAGCACAAATTTGCTACTGCACTTCAGAGTATCATAAGGACATCTGAGTCTCTCTGGCTCAGTCAATCCATGCCTATAGAGAAATGGACAGCCCCACCAGGTTCTTGGTTTCTTCTGTCAGAGGCGTCAGCATACCTTGCAAAAGCAGTTGACTGGGAGTTTCTCCGTCATCATTGGCAGCTTTTTGACAAGCATGGAGTGGGAGGGGAGATTCAGAGTCCACTTCCACAGGGATATGCACATGAAGAGGGAGGGGGTATAGAATCCAGTTCTGTTGCTTGGGCTGGGGATCGTGTTTTTCTCTTACAGACTATTTCTAATGTATCTGTTGAGCTGCCTTCTGAAGTTGGTGCAGAGTTAGCTCATGACTTGCTTAAAAGAATTGAAAATTTTAACATGCATTCAACAGAGGTTAATGCTCATGTAAAAGCACTCAGAACATTGTGCAAGCGGAAGGTTTCAGATCCAGAGCAGGCTGATACACTTGTTAAAAGATGCGTACATCAGATTGCCTCAAAAGCTTCCAAGATATTAGATAAGTATATATCCAAGGAGTCAAATACAACCCGAAAAGGTGGCTTCTTTACGCCACCTATAAGTGGGAGTAGAATGGGCAAGAGAGCCATAACCATGTCCAAGTCTTTGTCAAAAGTAGTGACAGCAGTCTATACAATTGGGTCTTTGGTTATTATTTGTCCATCTGCTGATATGAGCACCACCATTCCACTTTTATATACCATCATCACTTCTGGGAATTCTGATCCAAAAGTCAATAAACTAGCAGGCTCTATAGGATCTCTAAAGCAGACAGCACCTTCTTTGTACATTCAAGCATGGTTGACTATGGGGAAGATTTGCCTTACAGATGAAAAAATTGCAAAGACTTATATTCCTCTCTTTGTGCAGGAACTTGAAAAGAGTGATTGTGCAGCCCTTCGCAACAATCTGGTAGTTGTGATGGCAGATTTTTGCATTCGTCATACTTCTTTAGTTGATAGTTATATACCAAGGATCACAAAATGCCTCCGTGATCCATGCGAACTTGTAAGAAGGCAGACATTTATACTGCTCTCAAGATTGTTGCAGAGGGATTATGTGAAGTGGAGAGGAGTTCTTTTCCTGAGATTTCTCTTGTCACTTGTTGATGAGTCAGAAAAGATAAAGCAGCTCGCCACCTTTCTTTTCAGCAATATCTTGAAAGCTAAGGCGCCTCTTCTCGGATATAACAGTTTTGTAGAAGCAATTTTTGTTCTGAATGACTGCCGTGCCCACAAGGGACATACTGGTGCTCAGGGTTCACGAGCAGAGAGCCGCCTTTTTTCCATTAGGGGAAATGATGAAGCTTCGAGGTCTAGAAGAATGCACATCTATGTTTCTTTGCTGAAACAAATGGCTCCAGAGCACTTATTGCAAACGTTTGTAAAGTTATGTACAGAGATCCTTGCTGCAGCATCTGATGGCATGCTCAATATAGATGATATTACTGGGCAGGCTGTTCTGCAGGATGCTTTCCAAATTATTGCCTGCAAAGAAATCCGAATACCATCCAACCGTGGGTTATCATCTGACACTGGAGATATTGATGAAGAAGGTGGTGATAATGGTGGAGCAGCTGCTAAGGGAAGGGCAATAACTCAAGCACTCAAAAAGGGCCTCATCCAAAGCACAATACCCATCTTTATAGAGCTGAAGCGGCTATTGGAAAGCAAAAACAGCCCCCTTGTAGGCTCCCTCATGGAATGCCTCCGCATCATCCTCAAGGATTACAAAAATGAGATCGAAGACATATTAGTTGCTGATAAGCAGCTCCAGAAAGAGCTGATATATGACATGCAGAAGTATGAAAAGGCAAAGGTCAAGTCTACAGCTGCCGAGACTGTTGCCAACCATCAAAGAACAGTTAGCTTCAACTCTCCCGGTATATCCAAGATTGCAAGCGTGAGACAGGCACATAACAAATCCATTGGCAGATTGCAAGGCGACGTGAGATTATCTTCAGCAATGGGAGATGTAGCTGCTGAAGCCATAGCAAGGTCAGTGCTCAAGGACATGAACAAGGGGAGACAGACACCACCTCTCAGCTCTTTAAGCGTGCCTAAGCTCAAGACCTGCGAGGGAGGGCAGAGCTCTCGAAGTGGTGTGCCCTTGGATGTATTAGAATCTGTGAGAAGAAGACAGAATTTTGACTTTGTTGAGGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cnd1

Protein Analysis

1217

Amino Acids

134.73

Weight (kDa)

8.9

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd1 PF12717 795 - 969 9.2e-19 non-SMC mitotic condensation complex subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15890 AT4G15890
fragaria_vesca FvH4_4g18310
malus_domestica MD16G1167900.v1.1
prunus_persica Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1 Prupe.1G134700_v2.0.a1
pyrus_communis pycom16g14150
rosa_chinensis RchiOBHm_Chr4g0422791
rosa_laevigata RLG00000007605
rosa_multiflora Rmu_sc0000830.1_g000049
rosa_roxburghii Rroxscaffold_5G00364640
rosa_rugosa Rorug04G0181400
rosa_samantha Rh4AG241800 Rh4BG245200 Rh4CG255700 Rh4DG240400
rosa_wichuraiana Rw4G020810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AarI CACCTGC 1 cut(s) 454
AasI GACNNNNNNGTC 1 cut(s) 1495
Acc36I ACCTGC 2 cut(s) 454, 3566
AccB1I GGYRCC 4 cut(s) 436, 577, 1399, 2656
AccI GTMKAC 1 cut(s) 3311
AccII CGCG 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 253
AclI AACGTT 1 cut(s) 2864
AclWI GGATC 9 cut(s) 252, 1124, 1746, 1907, 2204, 2251, 2468, 2474, 2881
AcoI YGGCCR 1 cut(s) 1068
AcsI RAATTY 9 cut(s) 291, 550, 772, 877, 1416, 1457, 1837, 2203, 3628
AcuI CTGAAG 8 cut(s) 62, 1374, 1457, 1469, 1812, 3158, 3429, 3489
AcyI GRCGYC 3 cut(s) 578, 1574, 2657
AfaI GTAC 6 cut(s) 82, 563, 1347, 1950, 2273, 2881
AflII CTTAAG 1 cut(s) 371
AjiI CACGTC 1 cut(s) 3433
AjnI CCWGG 3 cut(s) 701, 1191, 1546
AjuI GAANNNNNNNTTGG 2 cut(s) 3131, 3163
Alw21I GWGCWC 7 cut(s) 359, 865, 2165, 2740, 2853, 3492, 3578
Alw26I GTCTC 7 cut(s) 390, 888, 1089, 1503, 3317, 3385, 3505
AlwI GGATC 9 cut(s) 252, 1124, 1746, 1907, 2204, 2251, 2468, 2474, 2881
AlwNI CAGNNNCTG 1 cut(s) 2903
Ama87I CYCGRG 1 cut(s) 597
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 3 cut(s) 699, 1068, 3100
ApoI RAATTY 9 cut(s) 291, 550, 772, 877, 1416, 1457, 1837, 2203, 3628
ArsI GACNNNNNNTTYG 2 cut(s) 3293, 3325
AspLEI GCGC 4 cut(s) 56, 580, 834, 2659
AspS9I GGNCC 2 cut(s) 568, 3100
AsuC2I CCSGG 3 cut(s) 78, 923, 3366
AsuHPI GGTGA 8 cut(s) 478, 544, 559, 691, 920, 965, 1420, 3056
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 1 cut(s) 568
BaeGI GKGCMC 2 cut(s) 2719, 3594
BaeI ACNNNNGTAYC 2 cut(s) 1920, 1953
BalI TGGCCA 1 cut(s) 1070
BanI GGYRCC 4 cut(s) 436, 577, 1399, 2656
BanII GRGCYC 3 cut(s) 78, 865, 3578
BauI CACGAG 2 cut(s) 864, 2748
BbsI GAAGAC 2 cut(s) 3237, 3628
Bbv12I GWGCWC 7 cut(s) 359, 865, 2165, 2740, 2853, 3492, 3578
BbvCI CCTCAGC 1 cut(s) 417
BceAI ACGGC 2 cut(s) 85, 2697
BcgI CGANNNNNNTGC 4 cut(s) 3311, 3345, 3560, 3594
BciT130I CCWGG 3 cut(s) 703, 1193, 1548
BclI TGATCA 1 cut(s) 1101
BcnI CCSGG 3 cut(s) 78, 923, 3366
BcoDI GTCTC 7 cut(s) 390, 888, 1089, 1503, 3317, 3385, 3505
BfaI CTAG 5 cut(s) 105, 360, 1257, 2228, 2802
BfmI CTRYAG 6 cut(s) 1314, 1524, 2238, 2895, 2948, 3312
BfoI RGCGCY 2 cut(s) 581, 2660
BfrI CTTAAG 1 cut(s) 371
BfuAI ACCTGC 2 cut(s) 454, 3566
BmcAI AGTACT 1 cut(s) 1347
Bme1390I CCNGG 6 cut(s) 78, 703, 923, 1193, 1548, 3366
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 597
BmgBI CACGTC 1 cut(s) 3433
BmgT120I GGNCC 2 cut(s) 568, 3100
BmiI GGNNCC 8 cut(s) 88, 438, 579, 920, 1401, 2658, 2844, 3178
BmrFI CCNGG 6 cut(s) 78, 703, 923, 1193, 1548, 3366
BmrI ACTGGG 2 cut(s) 1612, 2943
BmsI GCATC 6 cut(s) 832, 946, 1934, 2909, 2944, 3207
BmuI ACTGGG 2 cut(s) 1612, 2943
BoxI GACNNNNGTC 1 cut(s) 2111
BpiI GAAGAC 2 cut(s) 3237, 3628
BpmI CTGGAG 4 cut(s) 5, 2829, 3042, 3242
Bpu10I CCTNAGC 6 cut(s) 387, 417, 2652, 2739, 3066, 3546
BpuEI CTTGAG 7 cut(s) 545, 675, 2506, 3069, 3191, 3476, 3536
BpuMI CCSGG 3 cut(s) 78, 923, 3366
BsaHI GRCGYC 3 cut(s) 578, 1574, 2657
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 6 cut(s) 596, 1403, 1998, 2456, 3001, 3594
BsaWI WCCGGW 2 cut(s) 89, 253
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 7 cut(s) 22, 296, 1607, 1716, 2737, 2938, 3025
Bse3DI GCAATG 6 cut(s) 408, 549, 852, 966, 1393, 3456
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 3 cut(s) 703, 1193, 1548
BseDI CCNNGG 6 cut(s) 596, 1403, 1998, 2456, 3001, 3594
BseMI GCAATG 6 cut(s) 408, 549, 852, 966, 1393, 3456
BseNI ACTGG 7 cut(s) 22, 296, 1607, 1716, 2737, 2938, 3025
BseRI GAGGAG 2 cut(s) 8, 2571
BseSI GKGCMC 2 cut(s) 2719, 3594
BseYI CCCAGC 2 cut(s) 851, 1733
BsgI GTGCAG 5 cut(s) 1026, 1452, 1821, 2372, 2397
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 701, 1070, 3102
BshNI GGYRCC 4 cut(s) 436, 577, 1399, 2656
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 7 cut(s) 359, 865, 2165, 2740, 2853, 3492, 3578
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 7 cut(s) 34, 78, 90, 254, 581, 922, 3366
BslFI GGGAC 2 cut(s) 78, 2739
BsmAI GTCTC 7 cut(s) 390, 888, 1089, 1503, 3317, 3385, 3505
BsmFI GGGAC 2 cut(s) 78, 2739
BsmI GAATGC 5 cut(s) 1260, 1849, 2421, 2814, 3194
BsnI GGCC 3 cut(s) 701, 1070, 3102
Bso31I GGTCTC 1 cut(s) 390
BsoBI CYCGRG 1 cut(s) 597
Bsp13I TCCGGA 1 cut(s) 253
Bsp1407I TGTACA 2 cut(s) 2271, 2879
BspANI GGCC 3 cut(s) 701, 1070, 3102
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 1 cut(s) 54
BspHI TCATGA 1 cut(s) 1813
BspLI GGNNCC 8 cut(s) 88, 438, 579, 920, 1401, 2658, 2844, 3178
BspMAI CTGCAG 3 cut(s) 1318, 2899, 2952
BspMI ACCTGC 2 cut(s) 454, 3566
BspPI GGATC 9 cut(s) 252, 1124, 1746, 1907, 2204, 2251, 2468, 2474, 2881
BspT107I GGYRCC 4 cut(s) 436, 577, 1399, 2656
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 390
BsrDI GCAATG 6 cut(s) 408, 549, 852, 966, 1393, 3456
BsrFI RCCGGY 1 cut(s) 33
BsrGI TGTACA 2 cut(s) 2271, 2879
BsrI ACTGG 7 cut(s) 22, 296, 1607, 1716, 2737, 2938, 3025
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 6 cut(s) 596, 1403, 1998, 2456, 3001, 3594
BssNI GRCGYC 3 cut(s) 578, 1574, 2657
BssSI CACGAG 2 cut(s) 864, 2748
BssT1I CCWWGG 4 cut(s) 1403, 1998, 2456, 3594
Bst2BI CACGAG 2 cut(s) 864, 2748
Bst2UI CCWGG 3 cut(s) 703, 1193, 1548
Bst4CI ACNGT 6 cut(s) 149, 283, 2678, 3002, 3328, 3349
Bst6I CTCTTC 3 cut(s) 162, 1689, 2667
BstACI GRCGYC 3 cut(s) 578, 1574, 2657
BstAFI CTTAAG 1 cut(s) 371
BstAPI GCANNNNNTGC 2 cut(s) 1586, 2857
BstAUI TGTACA 2 cut(s) 2271, 2879
BstDSI CCRYGG 1 cut(s) 3001
BstEII GGTNACC 1 cut(s) 1054
BstFNI CGCG 1 cut(s) 54
BstH2I RGCGCY 2 cut(s) 581, 2660
BstHHI GCGC 4 cut(s) 56, 580, 834, 2659
BstMAI GTCTC 7 cut(s) 390, 888, 1089, 1503, 3317, 3385, 3505
BstMCI CGRYCG 1 cut(s) 38
BstNI CCWGG 3 cut(s) 703, 1193, 1548
BstNSI RCATGY 3 cut(s) 1849, 2914, 3283
BstPAI GACNNNNGTC 1 cut(s) 2111
BstPI GGTNACC 1 cut(s) 1054
BstSCI CCNGG 6 cut(s) 76, 701, 921, 1191, 1546, 3364
BstSFI CTRYAG 6 cut(s) 1314, 1524, 2238, 2895, 2948, 3312
BstSLI GKGCMC 2 cut(s) 2719, 3594
BstUI CGCG 1 cut(s) 54
BstV2I GAAGAC 2 cut(s) 3237, 3628
BstX2I RGATCY 3 cut(s) 1912, 2243, 2886
BstXI CCANNNNNNTGG 2 cut(s) 1066, 1554
BstYI RGATCY 3 cut(s) 1912, 2243, 2886
BsuRI GGCC 3 cut(s) 701, 1070, 3102
BtgI CCRYGG 1 cut(s) 3001
BtrI CACGTC 1 cut(s) 3433
BtsIMutI CAGTG 4 cut(s) 154, 1179, 3018, 3492
BveI ACCTGC 2 cut(s) 454, 3566
CaiI CAGNNNCTG 1 cut(s) 2903
CciI TCATGA 1 cut(s) 1813
CfoI GCGC 4 cut(s) 56, 580, 834, 2659
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 568, 3100
CseI GACGC 1 cut(s) 1563
CsiI ACCWGGT 1 cut(s) 1546
Csp6I GTAC 6 cut(s) 81, 562, 1346, 1949, 2272, 2880
CviQI GTAC 6 cut(s) 81, 562, 1346, 1949, 2272, 2880
DinI GGCGCC 2 cut(s) 579, 2658
DrdI GACNNNNNNGTC 1 cut(s) 1495
DseDI GACNNNNNNGTC 1 cut(s) 1495
EaeI YGGCCR 1 cut(s) 1068
Eam1104I CTCTTC 3 cut(s) 162, 1689, 2667
EarI CTCTTC 3 cut(s) 162, 1689, 2667
Ecl136II GAGCTC 2 cut(s) 863, 3576
Eco130I CCWWGG 4 cut(s) 1403, 1998, 2456, 3594
Eco24I GRGCYC 3 cut(s) 78, 865, 3578
Eco31I GGTCTC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 568
Eco53kI GAGCTC 2 cut(s) 863, 3576
Eco57I CTGAAG 8 cut(s) 62, 1374, 1457, 1469, 1812, 3158, 3429, 3489
Eco88I CYCGRG 1 cut(s) 597
Eco91I GGTNACC 1 cut(s) 1054
EcoICRI GAGCTC 2 cut(s) 863, 3576
EcoO109I RGGNCCY 1 cut(s) 3100
EcoO65I GGTNACC 1 cut(s) 1054
EcoRI GAATTC 2 cut(s) 772, 2203
EcoRII CCWGG 3 cut(s) 701, 1191, 1546
EcoT14I CCWWGG 4 cut(s) 1403, 1998, 2456, 3594
EcoT22I ATGCAT 1 cut(s) 1851
EcoT38I GRGCYC 3 cut(s) 78, 865, 3578
EgeI GGCGCC 2 cut(s) 579, 2658
EheI GGCGCC 2 cut(s) 579, 2658
ErhI CCWWGG 4 cut(s) 1403, 1998, 2456, 3594
FaqI GGGAC 2 cut(s) 78, 2739
FbaI TGATCA 1 cut(s) 1101
FblI GTMKAC 1 cut(s) 3311
FriOI GRGCYC 3 cut(s) 78, 865, 3578
FspBI CTAG 5 cut(s) 105, 360, 1257, 2228, 2802
GlaI GCGC 4 cut(s) 55, 579, 833, 2658
GsaI CCCAGC 2 cut(s) 855, 1737
GsuI CTGGAG 4 cut(s) 5, 2829, 3042, 3242
HaeII RGCGCY 2 cut(s) 581, 2660
HaeIII GGCC 3 cut(s) 701, 1070, 3102
HapII CCGG 7 cut(s) 34, 78, 90, 254, 581, 922, 3366
HgaI GACGC 1 cut(s) 1563
HhaI GCGC 4 cut(s) 56, 580, 834, 2659
Hin1I GRCGYC 3 cut(s) 578, 1574, 2657
Hin6I GCGC 4 cut(s) 54, 578, 832, 2657
HinP1I GCGC 4 cut(s) 54, 578, 832, 2657
HincII GTYRAC 3 cut(s) 724, 1600, 2289
HindII GTYRAC 3 cut(s) 724, 1600, 2289
HindIII AAGCTT 2 cut(s) 1968, 2790
HpaII CCGG 7 cut(s) 34, 78, 90, 254, 581, 922, 3366
HphI GGTGA 8 cut(s) 478, 544, 559, 691, 920, 965, 1420, 3056
Hpy166II GTNNAC 7 cut(s) 571, 724, 1600, 1670, 2289, 2747, 3312
Hpy8I GTNNAC 7 cut(s) 571, 724, 1600, 1670, 2289, 2747, 3312
Hpy99I CGWCG 1 cut(s) 3434
HpyCH4III ACNGT 6 cut(s) 149, 283, 2678, 3002, 3328, 3349
HpyCH4IV ACGT 2 cut(s) 2864, 3432
HpySE526I ACGT 2 cut(s) 2864, 3432
Hsp92I GRCGYC 3 cut(s) 578, 1574, 2657
HspAI GCGC 4 cut(s) 54, 578, 832, 2657
KasI GGCGCC 2 cut(s) 577, 2656
Kpn2I TCCGGA 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 1101
LmnI GCTCC 6 cut(s) 652, 918, 2848, 3056, 3182, 3261
LweI GCATC 6 cut(s) 832, 946, 1934, 2909, 2944, 3207
MabI ACCWGGT 1 cut(s) 1546
MaeI CTAG 5 cut(s) 105, 360, 1257, 2228, 2802
MaeII ACGT 2 cut(s) 2864, 3432
MaeIII GTNAC 5 cut(s) 92, 742, 1054, 2104, 2583
MfeI CAATTG 1 cut(s) 2121
MflI RGATCY 3 cut(s) 1912, 2243, 2886
MlsI TGGCCA 1 cut(s) 1070
MluNI TGGCCA 1 cut(s) 1070
Mly113I GGCGCC 2 cut(s) 578, 2657
MlyI GAGTC 8 cut(s) 623, 682, 1262, 1334, 1505, 1675, 2012, 2606
MmeI TCCRAC 3 cut(s) 785, 962, 3021
Mox20I TGGCCA 1 cut(s) 1070
Mph1103I ATGCAT 1 cut(s) 1851
MroI TCCGGA 1 cut(s) 253
MscI TGGCCA 1 cut(s) 1070
MseI TTAA 9 cut(s) 372, 1238, 1364, 1421, 1824, 1842, 1863, 1938, 3536
MslI CAYNNNNRTG 3 cut(s) 2078, 2733, 2817
Msp20I TGGCCA 1 cut(s) 1070
MspA1I CMGCKG 5 cut(s) 416, 889, 1028, 3062, 3317
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 7 cut(s) 34, 78, 90, 254, 581, 922, 3366
MspR9I CCNGG 6 cut(s) 78, 703, 923, 1193, 1548, 3366
MunI CAATTG 1 cut(s) 2121
Mva1269I GAATGC 5 cut(s) 1260, 1849, 2421, 2814, 3194
MvaI CCWGG 3 cut(s) 703, 1193, 1548
MvnI CGCG 1 cut(s) 54
NarI GGCGCC 2 cut(s) 578, 2657
NciI CCSGG 3 cut(s) 78, 923, 3366
NlaIV GGNNCC 8 cut(s) 88, 438, 579, 920, 1401, 2658, 2844, 3178
NmeAIII GCCGAG 1 cut(s) 3346
NmuCI GTSAC 2 cut(s) 2104, 2583
NsiI ATGCAT 1 cut(s) 1851
NspI RCATGY 3 cut(s) 1849, 2914, 3283
PaeI GCATGC 1 cut(s) 2914
PagI TCATGA 1 cut(s) 1813
PaqCI CACCTGC 1 cut(s) 454
PctI GAATGC 5 cut(s) 1260, 1849, 2421, 2814, 3194
PfoI TCCNGGA 1 cut(s) 1191
PleI GAGTC 8 cut(s) 622, 682, 1261, 1334, 1504, 1674, 2011, 2605
PluTI GGCGCC 2 cut(s) 581, 2660
PpsI GAGTC 8 cut(s) 622, 682, 1261, 1334, 1504, 1674, 2011, 2605
PshAI GACNNNNGTC 1 cut(s) 2111
PsiI TTATAA 1 cut(s) 336
Psp124BI GAGCTC 2 cut(s) 865, 3578
Psp1406I AACGTT 1 cut(s) 2864
Psp6I CCWGG 3 cut(s) 701, 1191, 1546
PspEI GGTNACC 1 cut(s) 1054
PspFI CCCAGC 2 cut(s) 851, 1733
PspGI CCWGG 3 cut(s) 701, 1191, 1546
PspN4I GGNNCC 8 cut(s) 88, 438, 579, 920, 1401, 2658, 2844, 3178
PspPI GGNCC 2 cut(s) 568, 3100
PstI CTGCAG 3 cut(s) 1318, 2899, 2952
PstNI CAGNNNCTG 1 cut(s) 2903
PsuI RGATCY 3 cut(s) 1912, 2243, 2886
PvuII CAGCTG 5 cut(s) 416, 889, 1028, 3062, 3317
RsaI GTAC 6 cut(s) 82, 563, 1347, 1950, 2273, 2881
RsaNI GTAC 6 cut(s) 81, 562, 1346, 1949, 2272, 2880
RseI CAYNNNNRTG 3 cut(s) 2078, 2733, 2817
SacI GAGCTC 2 cut(s) 865, 3578
SaqAI TTAA 9 cut(s) 372, 1238, 1364, 1421, 1824, 1842, 1863, 1938, 3536
Sau96I GGNCC 2 cut(s) 568, 3100
ScaI AGTACT 1 cut(s) 1347
SchI GAGTC 8 cut(s) 623, 682, 1262, 1334, 1505, 1675, 2012, 2606
ScrFI CCNGG 6 cut(s) 78, 703, 923, 1193, 1548, 3366
SexAI ACCWGGT 1 cut(s) 1546
SfaNI GCATC 6 cut(s) 832, 946, 1934, 2909, 2944, 3207
SfcI CTRYAG 6 cut(s) 1314, 1524, 2238, 2895, 2948, 3312
SfoI GGCGCC 2 cut(s) 579, 2658
SinI GGWCC 1 cut(s) 568
SmiMI CAYNNNNRTG 3 cut(s) 2078, 2733, 2817
SmlI CTYRAG 8 cut(s) 371, 524, 690, 2521, 3084, 3206, 3491, 3551
SmoI CTYRAG 8 cut(s) 371, 524, 690, 2521, 3084, 3206, 3491, 3551
SphI GCATGC 1 cut(s) 2914
SspDI GGCGCC 2 cut(s) 577, 2656
SspMI CTAG 5 cut(s) 105, 360, 1257, 2228, 2802
SstI GAGCTC 2 cut(s) 865, 3578
StyD4I CCNGG 6 cut(s) 76, 701, 921, 1191, 1546, 3364
StyI CCWWGG 4 cut(s) 1403, 1998, 2456, 3594
TaaI ACNGT 6 cut(s) 149, 283, 2678, 3002, 3328, 3349
TaiI ACGT 2 cut(s) 2867, 3435
TaqI TCGA 8 cut(s) 26, 612, 859, 875, 1444, 2795, 3228, 3580
TatI WGTACW 3 cut(s) 1345, 2271, 2879
TauI GCSGC 6 cut(s) 54, 101, 104, 1157, 2763, 3145
Tru1I TTAA 9 cut(s) 372, 1238, 1364, 1421, 1824, 1842, 1863, 1938, 3536
Tru9I TTAA 9 cut(s) 372, 1238, 1364, 1421, 1824, 1842, 1863, 1938, 3536
TscAI CASTG 4 cut(s) 154, 1179, 3025, 3492
TseFI GTSAC 2 cut(s) 2104, 2583
Tsp45I GTSAC 2 cut(s) 2104, 2583
TspDTI ATGAA 9 cut(s) 227, 981, 1001, 1707, 2331, 2802, 3048, 3306, 3515
TspGWI ACGGA 2 cut(s) 1604, 2465
TspRI CASTG 4 cut(s) 154, 1179, 3025, 3492
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 9 cut(s) 291, 550, 772, 877, 1416, 1457, 1837, 2203, 3628
XbaI TCTAGA 1 cut(s) 2801
XceI RCATGY 3 cut(s) 1849, 2914, 3283
XcmI CCANNNNNNNNNTGG 1 cut(s) 1551
XmiI GTMKAC 1 cut(s) 3311
XspI CTAG 5 cut(s) 105, 360, 1257, 2228, 2802
ZrmI AGTACT 1 cut(s) 1347
Zsp2I ATGCAT 1 cut(s) 1851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.