Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007039

Physical Location & Seq

Genomic Coordinates Forward (+)

20190607 .. 20192139

Gene Structure 1533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1212600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTAGCTCATTTTACAGATAGTCTTAAGATTTTCGAACATGGTAGTTTCTCTCAGAGCGTTACTAATTTACTAGCATTAGTACATGGTAAAATCTTTTGGAGATATAGTTTTGTCCTGATTTGCAAACCTTTACATATATCTGCTAGCTCTACATTTTGTGCGAGGAATATGATGCAAGGAAATATATGGGCTGTCCCCAACCCTCAAGGGTTTGCTCAAAGCATGGCACTTGTTCTTCGGTTTCAACCTCGTCTGTCCATTGCAATAGCCATCTCAGAACCTGGAGAATCATCAGAGCACCCACATTCCAATTCACTTTTCAAAGGCTTGCAAGTTTTATTAACTGATGATGATGATGTGAACAGGGTTGTGACGCGGAAAATGCTCGAGAAGCTTGGTTGCATTGTAACTGCCGTTTCATCTGGATTCGAATGCCTTTCTACTATTGGTACTATTGGTCCTGCTGGATCTTCATTCCAATTTGTTTTTCTTGATCTTCACATGCCTGAGTTGGATGGTTTTGAAGTTGCAATGAGAATTAGAAAATTTCGAAGCCGAACTTGGCCATTGATCATTGGCGTAACTGCTAGTGCTGACGAAGATGTGTGGGATAGATGCATGCAAACTGGAATCAATGGGGTTATCCGAAAACCAGTTCTTCTGCAAGGGATCGCGAATGAGCTACGAAGAGTCTTGCTGCAGGCAAACAAAGGGATGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

242

Amino Acids

26.72

Weight (kDa)

8.67

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	113 - 226	5.7e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23150 AT3G23150
fragaria_vesca	FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030
malus_domestica	MD13G1209700.v1.1 MD16G1212500.v1.1 MD16G1212600.v1.1
prunus_persica	Prupe.1G034300_v2.0.a1
pyrus_communis	pycom13g18190 pycom16g17840 pycom16g17850
rosa_chinensis	RchiOBHm_Chr4g0391281
rosa_laevigata	RLG00000009875
rosa_multiflora	Rmu_co8511169.1_g000001 Rmu_sc0005322.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337040
rosa_rugosa	Rorug03G0335400
rosa_samantha	Rh4AG036300 Rh4BG031100 Rh4CG039600 Rh4DG034100
rosa_wichuraiana	Rw4G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	379, 677
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	2 cut(s)	478, 680
AcoI	YGGCCR	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	548
AfaI	GTAC	2 cut(s)	84, 454
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	248, 325, 527
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	6 cut(s)	305, 337, 474, 506, 547, 579
AluBI	AGCT	4 cut(s)	8, 150, 397, 685
AluI	AGCT	4 cut(s)	8, 150, 397, 685
Alw21I	GWGCWC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	478, 680
AlwNI	CAGNNNCTG	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	700
ApoI	RAATTY	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	461
AsuII	TTCGAA	3 cut(s)	36, 432, 553
AsuNHI	GCTAGC	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	687
BccI	CCATC	2 cut(s)	281, 512
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	573
BfaI	CTAG	3 cut(s)	74, 147, 591
BfmI	CTRYAG	1 cut(s)	701
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	701
BlsI	GCNGC	1 cut(s)	702
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	165, 608
BmtI	GCTAGC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	306
Bpu14I	TTCGAA	3 cut(s)	36, 432, 553
BpuEI	CTTGAG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
Bse1I	ACTGG	2 cut(s)	634, 656
Bse3DI	GCAATG	2 cut(s)	261, 540
BseBI	CCWGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	523, 723
BseMI	GCAATG	2 cut(s)	261, 540
BseMII	CTCAG	3 cut(s)	68, 291, 501
BseNI	ACTGG	2 cut(s)	634, 656
BseXI	GCAGC	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	379, 677
BshFI	GGCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	3 cut(s)	36, 432, 553
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	4 cut(s)	470, 496, 573, 672
Bsp68I	TCGCGA	1 cut(s)	677
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	3 cut(s)	67, 290, 502
BspFNI	CGCG	2 cut(s)	379, 677
BspMAI	CTGCAG	1 cut(s)	705
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	478, 680
BspT104I	TTCGAA	3 cut(s)	36, 432, 553
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	261, 540
BsrI	ACTGG	2 cut(s)	634, 656
BssMI	GATC	4 cut(s)	470, 496, 573, 672
Bst2UI	CCWGG	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	685
BstAFI	CTTAAG	1 cut(s)	26
BstBI	TTCGAA	3 cut(s)	36, 432, 553
BstC8I	GCNNGC	4 cut(s)	148, 332, 623, 705
BstDEI	CTNAG	3 cut(s)	54, 277, 510
BstF5I	GGATG	2 cut(s)	523, 723
BstFNI	CGCG	2 cut(s)	379, 677
BstKTI	GATC	4 cut(s)	473, 499, 576, 675
BstMBI	GATC	4 cut(s)	470, 496, 573, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 394
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	508, 625
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	701
BstUI	CGCG	2 cut(s)	379, 677
BstV1I	GCAGC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	568
BtsCI	GGATG	2 cut(s)	523, 723
BtuMI	TCGCGA	1 cut(s)	677
Cac8I	GCNNGC	4 cut(s)	148, 332, 623, 705
CaiI	CAGNNNCTG	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	83, 453
CviAII	CATG	5 cut(s)	41, 86, 226, 505, 622
CviJI	RGCY	9 cut(s)	8, 150, 194, 272, 330, 397, 558, 568, 685
CviKI_1	RGCY	9 cut(s)	8, 150, 194, 272, 330, 397, 558, 568, 685
CviQI	GTAC	2 cut(s)	83, 453
DdeI	CTNAG	3 cut(s)	54, 277, 510
DpnI	GATC	4 cut(s)	472, 498, 575, 674
DpnII	GATC	4 cut(s)	470, 496, 573, 672
EaeI	YGGCCR	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	623
FaeI	CATG	5 cut(s)	44, 89, 229, 508, 625
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	5 cut(s)	40, 85, 225, 504, 621
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	1 cut(s)	701
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	701
FspBI	CTAG	3 cut(s)	74, 147, 591
GluI	GCNGC	1 cut(s)	701
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	568
HgaI	GACGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	44, 89, 229, 508, 625
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	290, 429, 633, 693
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	57, 280, 298, 650
Hpy188III	TCNNGA	5 cut(s)	118, 391, 426, 494, 676
Hpy8I	GTNNAC	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 394
HpyF3I	CTNAG	3 cut(s)	54, 277, 510
Hsp92II	CATG	5 cut(s)	44, 89, 229, 508, 625
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	4 cut(s)	470, 496, 573, 672
Lsp1109I	GCAGC	1 cut(s)	687
LweI	GCATC	2 cut(s)	165, 608
MaeI	CTAG	3 cut(s)	74, 147, 591
MaeIII	GTNAC	4 cut(s)	61, 373, 409, 583
MalI	GATC	4 cut(s)	472, 498, 575, 674
MboI	GATC	4 cut(s)	470, 496, 573, 672
MboII	GAAGA	6 cut(s)	230, 465, 491, 614, 653, 702
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	568
MluCI	AATT	5 cut(s)	67, 313, 482, 540, 548
MluNI	TGGCCA	1 cut(s)	568
MlyI	GAGTC	1 cut(s)	702
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	159, 216, 261
Mox20I	TGGCCA	1 cut(s)	568
Mph1103I	ATGCAT	1 cut(s)	623
MscI	TGGCCA	1 cut(s)	568
MseI	TTAA	2 cut(s)	27, 344
Msp20I	TGGCCA	1 cut(s)	568
MspCI	CTTAAG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	285
MvnI	CGCG	2 cut(s)	379, 677
MwoI	GCNNNNNNNGC	2 cut(s)	385, 394
NdeII	GATC	4 cut(s)	470, 496, 573, 672
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	44, 89, 229, 508, 625
NmuCI	GTSAC	1 cut(s)	373
NruI	TCGCGA	1 cut(s)	677
NsiI	ATGCAT	1 cut(s)	623
NspI	RCATGY	2 cut(s)	508, 625
NspV	TTCGAA	3 cut(s)	36, 432, 553
PaeI	GCATGC	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	389
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	290, 429, 633
PkrI	GCNGC	1 cut(s)	702
PleI	GAGTC	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	705
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	470
RruI	TCGCGA	1 cut(s)	677
RsaI	GTAC	2 cut(s)	84, 454
RsaNI	GTAC	2 cut(s)	83, 453
SaqAI	TTAA	2 cut(s)	27, 344
SatI	GCNGC	1 cut(s)	701
Sau3AI	GATC	4 cut(s)	470, 496, 573, 672
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	1 cut(s)	702
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	10, 133, 152, 253, 286, 399, 687
SfaNI	GCATC	2 cut(s)	165, 608
SfcI	CTRYAG	1 cut(s)	701
Sfr274I	CTCGAG	1 cut(s)	389
SfuI	TTCGAA	3 cut(s)	36, 432, 553
SinI	GGWCC	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	3 cut(s)	26, 207, 389
SmoI	CTYRAG	3 cut(s)	26, 207, 389
SphI	GCATGC	1 cut(s)	625
Sse9I	AATT	5 cut(s)	67, 313, 482, 540, 548
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	3 cut(s)	74, 147, 591
StyD4I	CCNGG	1 cut(s)	283
TaqI	TCGA	4 cut(s)	36, 390, 432, 553
TasI	AATT	5 cut(s)	67, 313, 482, 540, 548
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	290, 429, 633
Tru1I	TTAA	2 cut(s)	27, 344
Tru9I	TTAA	2 cut(s)	27, 344
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	700
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	2 cut(s)	411, 465
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	2 cut(s)	508, 625
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	3 cut(s)	74, 147, 591
Zsp2I	ATGCAT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.