Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8511169.1

Orthogroup ID

OG0007039

Physical Location & Seq

Genomic Coordinates Forward (+)

559 .. 3567

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8511169.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

atgttaaaggcattagcatctgggctatcaatttctttgctcctcgtatgtgtttcggcgtctgatagtggatttccgcggtgcaattgtgacgacgagggcagcttgtggagcattgagagcatactagaatgtcagcgagtgagcgatttcttgattgcagtggcctacttttcgatccccattgagctgctttactttatcagctgctcgaatgtacctttcaaatgggttctctttcagtttatcgccttcattgtgctatgtgggatgacacatttgctgaatggctggacttatggtcctcacccttttcagctaatgcttgctctcacggttttcaaaattctcactgctctggtatcatgtgccactgctataacgctcatcactctcattcctttgcttctcaaagtcaaagtgagagaatttatgttgaagaagaagacttgggaccttggaagagaggttgggattataatgagacagaaagaagctggaatgcatgttcgaatgcttacccaagagattcgcaagtctcttgatagacatacaatattgtccacaaccctctttgagctatctgagacattgggtttgcagtactgtgcagtttggatgcctaatgaaattaaaacggagatgatcctgacccatgagttgaaagggaggaattattctaatatgtacaacttttctataccaataggtgatccagatgttgtacttatcaaagggagtgatggggtcaacatccttgggccagattcaatactcgtgtctggaagcagtggtgattttggtgagccgggaccagtagctgcaatacggatgccaatgcttcgggtttccaatttcaaagggggtacccctgagttgatccagacttgttatgcgattttggttctggttctccctggtggacagcctagatcttggagcagccaggaacttgagataattaaggtggttgctgatcaggtggctgtggctttatcccatgctgcaatccttgaagagtcccaacttatgcgggaacaattggctgagcaaaatcgagccttgcaacaggcgaaaatgaatgctatgttggcaagccaagcaagaaactcattccagaaggtaatgagtgatgggatgagaaggccaatgcactcagttttggggttgctttccatgatgcaggatgagagtttgaataatgatcaacgagttattgttgatgcaatggtgaggacgagcaatgtcctatcgaccttaataaatgatgcgatggacaattcagccaaggatagtggaagatttcctttagagatgagatctttccggttacatgcaatgataaaagaagcagcttgccttgccaaatgcttgtgtgtgtataggggatttggttttgcaattgaggttgacaagtccttagctgatcatgtaatgggagatgaaagaagggtttttcaggtgattttgcatatggttgggagcctgctgaatggaaaccaggggggagggttggtcgtgtttcgggtttcttcagagaatggaagtcaggggaggaatgatcaaagatgggcaccttggagacaaaactcatctgatggtggtgatgtatatgttagatttgagattgggataagcaacggtggttctcaatcagatggcacaaatccaacgatgcagcttgttggtaagagatacaacagtgaaggagttgaggagaacttgagcttcagcatttgcaaaaggctagtgcagttgatgcaaggaaacatatgggcaatccctaatcctcaaggatttgctcaaagcatggcacttgttctccggtttcaacctcggcagtccattgcaataaccatctctgaacctggaggatcatcagatcactcacattcaaattctattttcagaggcttgcaagttctgttaacagatgaagatgatgtgaatagggctgtgacccggaaactgcttgagaagctaggttgcaatgtaaccgctgtttcctctggatttgaatgcctttctgccattggtccctctggagcttctgtccaagtcatttttctagatctccaaatgaccgagttggatggttatgaagtcgcaatgagaattagaaaatttcgaagcctcacttggccattgatcatcgctgtaactgctagtgcagatgaagatgtttgggatagatgcatgcagattgggatcaatggaattatccgaaaaccagcattgttgcaagggattgccagcgagctaagaagaatcctggtgcaggcaaacaaaattgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

765

Amino Acids

84.5

Weight (kDa)

6.66

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23150 AT3G23150
fragaria_vesca	FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030
malus_domestica	MD13G1209700.v1.1 MD16G1212500.v1.1 MD16G1212600.v1.1
prunus_persica	Prupe.1G034300_v2.0.a1
pyrus_communis	pycom13g18190 pycom16g17840 pycom16g17850
rosa_chinensis	RchiOBHm_Chr4g0391281
rosa_laevigata	RLG00000009875
rosa_multiflora	Rmu_co8511169.1_g000001 Rmu_sc0005322.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337040
rosa_rugosa	Rorug03G0335400
rosa_samantha	Rh4AG036300 Rh4BG031100 Rh4CG039600 Rh4DG034100
rosa_wichuraiana	Rw4G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	866
AccB1I	GGYRCC	2 cut(s)	866, 1573
AccII	CGCG	1 cut(s)	79
AciI	CCGC	4 cut(s)	77, 79, 1033, 1998
AclWI	GGATC	6 cut(s)	172, 640, 707, 874, 1882, 2216
AcoI	YGGCCR	1 cut(s)	2141
AcsI	RAATTY	4 cut(s)	345, 428, 1897, 2123
AcuI	CTGAAG	2 cut(s)	1518, 1714
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	5 cut(s)	219, 605, 689, 726, 868
AfiI	CCNNNNNNNGG	1 cut(s)	2278
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
AjuI	GAANNNNNNNTTGG	6 cut(s)	1073, 1105, 2049, 2081, 2122, 2154
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
Alw26I	GTCTC	4 cut(s)	478, 543, 581, 1576
AlwI	GGATC	6 cut(s)	172, 640, 707, 874, 1882, 2216
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	4 cut(s)	165, 761, 1145, 2141
ApeKI	GCWGC	8 cut(s)	102, 190, 207, 821, 942, 1004, 1352, 1678
ApoI	RAATTY	4 cut(s)	345, 428, 1897, 2123
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
Asp718I	GGTACC	1 cut(s)	866
AspS9I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
AsuC2I	CCSGG	2 cut(s)	810, 1963
AsuHPI	GGTGA	7 cut(s)	299, 722, 806, 815, 1243, 1474, 1616
AsuII	TTCGAA	2 cut(s)	511, 2128
AvaII	GGWCC	4 cut(s)	302, 454, 812, 2036
BaeGI	GKGCMC	1 cut(s)	1576
BaeI	ACNNNNGTAYC	2 cut(s)	1687, 1720
BalI	TGGCCA	1 cut(s)	2143
BanI	GGYRCC	2 cut(s)	866, 1573
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
BccI	CCATC	8 cut(s)	737, 1127, 1267, 1563, 1592, 1652, 1865, 2087
BciT130I	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
BclI	TGATCA	5 cut(s)	976, 1204, 1426, 1561, 2148
BcnI	CCSGG	2 cut(s)	810, 1963
BcoDI	GTCTC	4 cut(s)	478, 543, 581, 1576
BfaI	CTAG	6 cut(s)	128, 930, 1748, 1982, 2069, 2166
BglII	AGATCT	3 cut(s)	932, 1319, 2071
BisI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
BlpI	GCTNAGC	1 cut(s)	1047
BlsI	GCNGC	8 cut(s)	104, 192, 209, 823, 944, 1006, 1354, 1680
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
Bme18I	GGWCC	4 cut(s)	302, 454, 812, 2036
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmgT120I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
BmiI	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
BmrFI	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
BmsI	GCATC	9 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665, 1749, 2183
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	2 cut(s)	1890, 2064
Bpu10I	CCTNAGC	1 cut(s)	1420
Bpu1102I	GCTNAGC	1 cut(s)	1047
Bpu14I	TTCGAA	2 cut(s)	511, 2128
BpuEI	CTTGAG	4 cut(s)	974, 1744, 1776, 1994
BpuMI	CCSGG	2 cut(s)	810, 1963
BsaBI	GATNNNNATC	1 cut(s)	2207
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	8 cut(s)	77, 457, 757, 916, 1287, 1501, 1577, 1835
BsaWI	WCCGGW	2 cut(s)	1326, 1824
BsaXI	ACNNNNNCTCC	6 cut(s)	1500, 1530, 1806, 1836, 2037, 2067
Bsc4I	CCNNNNNNNGG	1 cut(s)	2278
Bse1I	ACTGG	1 cut(s)	815
Bse3DI	GCAATG	6 cut(s)	1233, 1249, 1344, 1845, 1996, 2115
Bse8I	GATNNNNATC	1 cut(s)	2207
BseBI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
BseDI	CCNNGG	8 cut(s)	77, 457, 757, 916, 1287, 1501, 1577, 1835
BseGI	GGATG	7 cut(s)	276, 624, 753, 837, 1143, 1192, 2098
BseJI	GATNNNNATC	1 cut(s)	2207
BseLI	CCNNNNNNNGG	1 cut(s)	2278
BseMI	GCAATG	6 cut(s)	1233, 1249, 1344, 1845, 1996, 2115
BseMII	CTCAG	4 cut(s)	576, 864, 1038, 1170
BseNI	ACTGG	1 cut(s)	815
BseRI	GAGGAG	2 cut(s)	32, 1730
BseSI	GKGCMC	1 cut(s)	1576
BseXI	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
BsgI	GTGCAG	4 cut(s)	630, 1772, 2190, 2297
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	167, 763, 1147, 2143
BshNI	GGYRCC	2 cut(s)	866, 1573
BsiSI	CCGG	4 cut(s)	809, 1327, 1825, 1963
BslFI	GGGAC	4 cut(s)	467, 825, 1006, 2022
BslI	CCNNNNNNNGG	1 cut(s)	2278
BsmAI	GTCTC	4 cut(s)	478, 543, 581, 1576
BsmFI	GGGAC	4 cut(s)	467, 825, 1006, 2022
BsmI	GAATGC	4 cut(s)	507, 519, 1087, 2024
BsnI	GGCC	4 cut(s)	167, 763, 1147, 2143
Bsp119I	TTCGAA	2 cut(s)	511, 2128
Bsp1286I	GDGCHC	1 cut(s)	1576
Bsp1407I	TGTACA	1 cut(s)	687
Bsp1720I	GCTNAGC	1 cut(s)	1047
BspACI	CCGC	4 cut(s)	77, 79, 1033, 1998
BspANI	GGCC	4 cut(s)	167, 763, 1147, 2143
BspCNI	CTCAG	4 cut(s)	577, 865, 1039, 1169
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
BspPI	GGATC	6 cut(s)	172, 640, 707, 874, 1882, 2216
BspT104I	TTCGAA	2 cut(s)	511, 2128
BspT107I	GGYRCC	2 cut(s)	866, 1573
BsrDI	GCAATG	6 cut(s)	1233, 1249, 1344, 1845, 1996, 2115
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	815
BssECI	CCNNGG	8 cut(s)	77, 457, 757, 916, 1287, 1501, 1577, 1835
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
Bst4CI	ACNGT	4 cut(s)	337, 608, 1643, 1703
Bst6I	CTCTTC	2 cut(s)	457, 1011
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	1759
BstAUI	TGTACA	1 cut(s)	687
BstBI	TTCGAA	2 cut(s)	511, 2128
BstC8I	GCNNGC	9 cut(s)	327, 1096, 1357, 1487, 1916, 2198, 2254, 2258, 2280
BstDEI	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 2261
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	2276
BstF5I	GGATG	7 cut(s)	276, 624, 753, 837, 1143, 1192, 2098
BstFNI	CGCG	1 cut(s)	79
BstMAI	GTCTC	4 cut(s)	478, 543, 581, 1576
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 120, 1091, 1100, 1361, 1759, 1978, 2162
BstNI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
BstNSI	RCATGY	3 cut(s)	509, 1337, 2200
BstSCI	CCNGG	7 cut(s)	808, 916, 945, 1500, 1867, 1961, 2271
BstSLI	GKGCMC	1 cut(s)	1576
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	3 cut(s)	932, 1319, 2071
BstYI	RGATCY	3 cut(s)	932, 1319, 2071
BsuRI	GGCC	4 cut(s)	167, 763, 1147, 2143
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	2 cut(s)	1286, 2137
BtsCI	GGATG	7 cut(s)	276, 624, 753, 837, 1143, 1192, 2098
BtsI	GCAGTG	4 cut(s)	168, 351, 372, 796
BtsIMutI	CAGTG	5 cut(s)	168, 351, 372, 796, 1708
Cac8I	GCNNGC	9 cut(s)	327, 1096, 1357, 1487, 1916, 2198, 2254, 2258, 2280
CaiI	CAGNNNCTG	1 cut(s)	821
Cfr13I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	5 cut(s)	218, 604, 688, 725, 867
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviAII	CATG	9 cut(s)	366, 506, 656, 1001, 1177, 1334, 1430, 1810, 2197
CviQI	GTAC	5 cut(s)	218, 604, 688, 725, 867
DdeI	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 2261
DriI	GACNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	2141
Eam1104I	CTCTTC	2 cut(s)	457, 1011
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	2 cut(s)	457, 1011
Eco130I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
Eco47I	GGWCC	4 cut(s)	302, 454, 812, 2036
Eco57I	CTGAAG	2 cut(s)	1518, 1714
EcoNI	CCTNNNNNAGG	1 cut(s)	2276
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
EcoT14I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
EcoT22I	ATGCAT	2 cut(s)	507, 2198
ErhI	CCWWGG	4 cut(s)	457, 757, 1287, 1577
FaeI	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
FalI	AAGNNNNNCTT	4 cut(s)	1291, 1323, 2122, 2154
FaqI	GGGAC	4 cut(s)	467, 825, 1006, 2022
FatI	CATG	9 cut(s)	365, 505, 655, 1000, 1176, 1333, 1429, 1809, 2196
FauI	CCCGC	1 cut(s)	1026
FauNDI	CATATG	2 cut(s)	1473, 1772
FbaI	TGATCA	5 cut(s)	976, 1204, 1426, 1561, 2148
Fnu4HI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
FokI	GGATG	7 cut(s)	283, 631, 740, 844, 1150, 1199, 2105
Fsp4HI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
FspBI	CTAG	6 cut(s)	128, 930, 1748, 1982, 2069, 2166
GluI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
GsuI	CTGGAG	2 cut(s)	1890, 2064
HaeIII	GGCC	4 cut(s)	167, 763, 1147, 2143
HapII	CCGG	4 cut(s)	809, 1327, 1825, 1963
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
HincII	GTYRAC	3 cut(s)	751, 1411, 1929
HindII	GTYRAC	3 cut(s)	751, 1411, 1929
HinfI	GANTC	4 cut(s)	529, 767, 1019, 2268
HpaI	GTTAAC	1 cut(s)	1929
HpaII	CCGG	4 cut(s)	809, 1327, 1825, 1963
HphI	GGTGA	7 cut(s)	299, 722, 806, 815, 1243, 1474, 1616
Hpy166II	GTNNAC	5 cut(s)	564, 751, 923, 1411, 1929
Hpy188I	TCNGA	9 cut(s)	64, 586, 1537, 1597, 1657, 1864, 1882, 1910, 2225
Hpy8I	GTNNAC	5 cut(s)	564, 751, 923, 1411, 1929
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	262, 1114, 1137, 1443, 1700
HpyCH4III	ACNGT	4 cut(s)	337, 608, 1643, 1703
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 120, 1091, 1100, 1361, 1759, 1978, 2162
HpyF3I	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 2261
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
KpnI	GGTACC	1 cut(s)	870
Ksp22I	TGATCA	5 cut(s)	976, 1204, 1426, 1561, 2148
KspAI	GTTAAC	1 cut(s)	1929
KspI	CCGCGG	1 cut(s)	80
LmnI	GCTCC	5 cut(s)	45, 111, 939, 1482, 2045
Lsp1109I	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
LweI	GCATC	9 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665, 1749, 2183
MaeI	CTAG	6 cut(s)	128, 930, 1748, 1982, 2069, 2166
MaeIII	GTNAC	5 cut(s)	89, 1329, 1957, 1993, 2158
MfeI	CAATTG	3 cut(s)	85, 1040, 1401
MflI	RGATCY	3 cut(s)	932, 1319, 2071
MhlI	GDGCHC	1 cut(s)	1576
MlsI	TGGCCA	1 cut(s)	2143
MluNI	TGGCCA	1 cut(s)	2143
MlyI	GAGTC	1 cut(s)	1028
MmeI	TCCRAC	2 cut(s)	1694, 2070
Mox20I	TGGCCA	1 cut(s)	2143
Mph1103I	ATGCAT	2 cut(s)	507, 2198
MscI	TGGCCA	1 cut(s)	2143
MseI	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
Msp20I	TGGCCA	1 cut(s)	2143
MspA1I	CMGCKG	3 cut(s)	79, 207, 2000
MspI	CCGG	4 cut(s)	809, 1327, 1825, 1963
MspR9I	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
MunI	CAATTG	3 cut(s)	85, 1040, 1401
Mva1269I	GAATGC	4 cut(s)	507, 519, 1087, 2024
MvaI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	8 cut(s)	111, 120, 1091, 1100, 1361, 1759, 1978, 2162
NciI	CCSGG	2 cut(s)	810, 1963
NdeI	CATATG	2 cut(s)	1473, 1772
NlaIII	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
NlaIV	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
NmeAIII	GCCGAG	1 cut(s)	1816
NmuCI	GTSAC	2 cut(s)	89, 1957
NsiI	ATGCAT	2 cut(s)	507, 2198
NspI	RCATGY	3 cut(s)	509, 1337, 2200
NspV	TTCGAA	2 cut(s)	511, 2128
PaeI	GCATGC	1 cut(s)	2200
PctI	GAATGC	4 cut(s)	507, 519, 1087, 2024
PfeI	GAWTC	3 cut(s)	529, 767, 2268
PkrI	GCNGC	8 cut(s)	104, 192, 209, 823, 944, 1006, 1354, 1680
PleI	GAGTC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	1027
PpuMI	RGGWCCY	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
PspGI	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
PspN4I	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
PspPI	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
PspPPI	RGGWCCY	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	3 cut(s)	932, 1319, 2071
PvuII	CAGCTG	1 cut(s)	207
RsaI	GTAC	5 cut(s)	219, 605, 689, 726, 868
RsaNI	GTAC	5 cut(s)	218, 604, 688, 725, 867
SacII	CCGCGG	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
SatI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
Sau96I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	1 cut(s)	1028
ScrFI	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
SduI	GDGCHC	1 cut(s)	1576
SfaNI	GCATC	9 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665, 1749, 2183
Sfr303I	CCGCGG	1 cut(s)	80
SfuI	TTCGAA	2 cut(s)	511, 2128
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	4 cut(s)	302, 454, 812, 2036
SmlI	CTYRAG	4 cut(s)	953, 1723, 1791, 1973
SmoI	CTYRAG	4 cut(s)	953, 1723, 1791, 1973
SphI	GCATGC	1 cut(s)	2200
SsiI	CCGC	4 cut(s)	77, 79, 1033, 1998
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	6 cut(s)	128, 930, 1748, 1982, 2069, 2166
StyD4I	CCNGG	7 cut(s)	808, 916, 945, 1500, 1867, 1961, 2271
StyI	CCWWGG	4 cut(s)	457, 757, 1287, 1577
TaaI	ACNGT	4 cut(s)	337, 608, 1643, 1703
TaqI	TCGA	6 cut(s)	176, 212, 511, 1057, 1253, 2128
TaqII	GACCGA	1 cut(s)	2099
TatI	WGTACW	3 cut(s)	603, 687, 724
TfiI	GAWTC	3 cut(s)	529, 767, 2268
Tru1I	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
Tru9I	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
TscAI	CASTG	5 cut(s)	168, 358, 379, 796, 1708
TseFI	GTSAC	2 cut(s)	89, 1957
TseI	GCWGC	8 cut(s)	102, 190, 207, 821, 942, 1004, 1352, 1678
Tsp45I	GTSAC	2 cut(s)	89, 1957
TspDTI	ATGAA	7 cut(s)	244, 642, 1094, 1458, 1950, 2115, 2190
TspGWI	ACGGA	2 cut(s)	653, 844
TspRI	CASTG	5 cut(s)	168, 358, 379, 796, 1708
VpaK11BI	GGWCC	4 cut(s)	302, 454, 812, 2036
XagI	CCTNNNNNAGG	1 cut(s)	2276
XapI	RAATTY	4 cut(s)	345, 428, 1897, 2123
XbaI	TCTAGA	1 cut(s)	2068
XceI	RCATGY	3 cut(s)	509, 1337, 2200
XspI	CTAG	6 cut(s)	128, 930, 1748, 1982, 2069, 2166
ZrmI	AGTACT	1 cut(s)	605
Zsp2I	ATGCAT	2 cut(s)	507, 2198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.