Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007039

Physical Location & Seq

Genomic Coordinates Forward (+)

14133137 .. 14134675

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTTCGGGTTGCTTCAGAGAAGGGGAGTCAGGGGAGGAGTGATCAAAGGTGGGCAGCCTGGAGACATAGTTCATCTGATGGTGATTTATGTGTTAGATTTGAGATTGGGATAAGCAATAGCGGCTCTCAATCAGAGGTCACAATTCCAGCAGTGCAGCTGGTTGGTAGGAGATACGCCAGTGAAGGTGTTGATGAGGGCTTGAGCTTCACCATTTGCAAAAAGCTAGTGCAGATGATGCAAGGAAATATATGGGCAGTCCCCAATCCTCAAGGGTTTGCTCAAAGCATGGCACTTGTTCTTCGGTTTCAACCTTGTCTGTCCACTGCAATAGCCATCTCAGATCCTGGAGAATCATCAGAGCACCCACATTCCAATTCACTTTTCAAAGGCTTGCAAGTTTTATTAACTGATGATGATGATGTGAACAGGGTTGTGACGAGGAAAATGCTTGAGAAGCTTGGTTGCATTGTAACTGCCGTTTCATCTGGATTCGAATGCCTTTCTACTATTGGTACTATCGGTCCTGCTGGATCTTCATTCCAATTTGTTTTACTTGATCTTCACATGCCCGAGTTGGATGGTTTTGAAGTTGCAATGAGAATTCGAAAATTTCGAAGCCGTACTTGGCCATTGATCATTGGCGTAACTGCTAGTGCTGACGAAGATGTGTGGGATAGATGTATGCAAACTGGAATCAATGGGGTTGTCCGAAAACCAGTTCTTCTGCAAGGGATCGTGAATGAGCTACGAAGAGTCTTGCTGCAGGCAAACAAAGGGATGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

263

Amino Acids

28.73

Weight (kDa)

6.9

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	134 - 249	5.6e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23150 AT3G23150
fragaria_vesca	FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030
malus_domestica	MD13G1209700.v1.1 MD16G1212500.v1.1 MD16G1212600.v1.1
prunus_persica	Prupe.1G034300_v2.0.a1
pyrus_communis	pycom13g18190 pycom16g17840 pycom16g17850
rosa_chinensis	RchiOBHm_Chr4g0391281
rosa_laevigata	RLG00000009875
rosa_multiflora	Rmu_co8511169.1_g000001 Rmu_sc0005322.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337040
rosa_rugosa	Rorug03G0335400
rosa_samantha	Rh4AG036300 Rh4BG031100 Rh4CG039600 Rh4DG034100
rosa_wichuraiana	Rw4G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	3 cut(s)	338, 541, 743
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	603, 611
AfaI	GTAC	2 cut(s)	517, 625
AgsI	TTSAA	3 cut(s)	311, 388, 590
AjnI	CCWGG	2 cut(s)	59, 346
AjuI	GAANNNNNNNTTGG	4 cut(s)	368, 400, 610, 642
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
AluBI	AGCT	5 cut(s)	160, 207, 226, 460, 748
AluI	AGCT	5 cut(s)	160, 207, 226, 460, 748
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	338, 541, 743
AlwNI	CAGNNNCTG	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	1 cut(s)	629
ApeKI	GCWGC	3 cut(s)	56, 157, 763
ApoI	RAATTY	2 cut(s)	603, 611
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	95, 202
AsuII	TTCGAA	3 cut(s)	495, 607, 616
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	524
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BalI	TGGCCA	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	68, 169, 750
BccI	CCATC	3 cut(s)	74, 344, 575
BceAI	ACGGC	2 cut(s)	464, 606
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BciT130I	CCWGG	2 cut(s)	61, 348
BclI	TGATCA	2 cut(s)	43, 636
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	227, 654
BfmI	CTRYAG	1 cut(s)	764
BisI	GCNGC	4 cut(s)	57, 124, 158, 764
BlsI	GCNGC	4 cut(s)	58, 125, 159, 765
Bme1390I	CCNGG	2 cut(s)	61, 348
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	524
BmrFI	CCNGG	2 cut(s)	61, 348
BmsI	GCATC	1 cut(s)	228
BpmI	CTGGAG	2 cut(s)	82, 369
Bpu14I	TTCGAA	3 cut(s)	495, 607, 616
BpuEI	CTTGAG	3 cut(s)	223, 255, 473
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse1I	ACTGG	3 cut(s)	180, 697, 719
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	61, 348
BseGI	GGATG	2 cut(s)	586, 786
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	3 cut(s)	180, 697, 719
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	68, 169, 750
BsgI	GTGCAG	2 cut(s)	176, 251
BshFI	GGCC	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	572
BslFI	GGGAC	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	631
BsoBI	CYCGRG	1 cut(s)	572
Bsp119I	TTCGAA	3 cut(s)	495, 607, 616
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	631
BspCNI	CTCAG	1 cut(s)	353
BspMAI	CTGCAG	1 cut(s)	768
BspPI	GGATC	3 cut(s)	338, 541, 743
BspT104I	TTCGAA	3 cut(s)	495, 607, 616
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	180, 697, 719
BssMI	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
Bst2UI	CCWGG	2 cut(s)	61, 348
Bst6I	CTCTTC	1 cut(s)	748
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBI	TTCGAA	3 cut(s)	495, 607, 616
BstC8I	GCNNGC	2 cut(s)	395, 768
BstDEI	CTNAG	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	586, 786
BstKTI	GATC	6 cut(s)	46, 346, 536, 562, 639, 738
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 238, 457
BstNI	CCWGG	2 cut(s)	61, 348
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	59, 346
BstSFI	CTRYAG	1 cut(s)	764
BstV1I	GCAGC	3 cut(s)	68, 169, 750
BstX2I	RGATCY	2 cut(s)	343, 533
BstYI	RGATCY	2 cut(s)	343, 533
BsuRI	GGCC	1 cut(s)	631
BtsCI	GGATG	2 cut(s)	586, 786
BtsI	GCAGTG	2 cut(s)	159, 324
BtsIMutI	CAGTG	3 cut(s)	159, 187, 324
Cac8I	GCNNGC	2 cut(s)	395, 768
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	524
Csp6I	GTAC	2 cut(s)	516, 624
CviAII	CATG	2 cut(s)	289, 568
CviQI	GTAC	2 cut(s)	516, 624
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	6 cut(s)	45, 345, 535, 561, 638, 737
DpnII	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	603
EcoRII	CCWGG	2 cut(s)	59, 346
FaeI	CATG	2 cut(s)	292, 571
FaiI	YATR	8 cut(s)	69, 91, 251, 253, 290, 569, 686, 787
FalI	AAGNNNNNCTT	2 cut(s)	610, 642
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	288, 567
FbaI	TGATCA	2 cut(s)	43, 636
Fnu4HI	GCNGC	4 cut(s)	57, 124, 158, 764
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	4 cut(s)	57, 124, 158, 764
FspBI	CTAG	2 cut(s)	227, 654
GluI	GCNGC	4 cut(s)	57, 124, 158, 764
GsuI	CTGGAG	2 cut(s)	82, 369
HaeIII	GGCC	1 cut(s)	631
Hin1II	CATG	2 cut(s)	292, 571
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	5 cut(s)	28, 353, 492, 696, 756
HphI	GGTGA	2 cut(s)	95, 202
Hpy166II	GTNNAC	2 cut(s)	324, 427
Hpy188I	TCNGA	6 cut(s)	19, 79, 136, 343, 361, 713
Hpy188III	TCNNGA	2 cut(s)	489, 739
Hpy8I	GTNNAC	2 cut(s)	324, 427
HpyAV	CCTTC	2 cut(s)	16, 179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 238, 457
HpyF3I	CTNAG	1 cut(s)	340
Hsp92II	CATG	2 cut(s)	292, 571
Ksp22I	TGATCA	2 cut(s)	43, 636
Kzo9I	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
Lsp1109I	GCAGC	3 cut(s)	68, 169, 750
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	227, 654
MaeIII	GTNAC	4 cut(s)	139, 436, 472, 646
MalI	GATC	6 cut(s)	45, 345, 535, 561, 638, 737
MboI	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
MboII	GAAGA	6 cut(s)	293, 528, 554, 677, 716, 765
MflI	RGATCY	2 cut(s)	343, 533
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	631
MluCI	AATT	5 cut(s)	144, 376, 545, 603, 611
MluNI	TGGCCA	1 cut(s)	631
MlyI	GAGTC	2 cut(s)	37, 765
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	5 cut(s)	30, 130, 190, 279, 435
Mox20I	TGGCCA	1 cut(s)	631
MscI	TGGCCA	1 cut(s)	631
MseI	TTAA	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	631
MspA1I	CMGCKG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	61, 348
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	61, 348
MwoI	GCNNNNNNNGC	3 cut(s)	123, 238, 457
NdeII	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
NlaIII	CATG	2 cut(s)	292, 571
NmuCI	GTSAC	2 cut(s)	139, 436
NspI	RCATGY	1 cut(s)	571
NspV	TTCGAA	3 cut(s)	495, 607, 616
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PctI	GAATGC	1 cut(s)	503
PfeI	GAWTC	3 cut(s)	353, 492, 696
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	4 cut(s)	58, 125, 159, 765
PleI	GAGTC	2 cut(s)	36, 764
PpsI	GAGTC	2 cut(s)	36, 764
Psp6I	CCWGG	2 cut(s)	59, 346
PspGI	CCWGG	2 cut(s)	59, 346
PspPI	GGNCC	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	343, 533
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	517, 625
RsaNI	GTAC	2 cut(s)	516, 624
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	4 cut(s)	57, 124, 158, 764
Sau3AI	GATC	6 cut(s)	43, 343, 533, 559, 636, 735
Sau96I	GGNCC	1 cut(s)	524
SchI	GAGTC	2 cut(s)	37, 765
ScrFI	CCNGG	2 cut(s)	61, 348
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	9 cut(s)	53, 141, 162, 190, 209, 228, 316, 462, 750
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	764
SfuI	TTCGAA	3 cut(s)	495, 607, 616
SinI	GGWCC	1 cut(s)	524
SmlI	CTYRAG	3 cut(s)	202, 270, 452
SmoI	CTYRAG	3 cut(s)	202, 270, 452
Sse9I	AATT	5 cut(s)	144, 376, 545, 603, 611
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	227, 654
StyD4I	CCNGG	2 cut(s)	59, 346
TaqI	TCGA	3 cut(s)	495, 607, 616
TaqII	GACCGA	1 cut(s)	512
TasI	AATT	5 cut(s)	144, 376, 545, 603, 611
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	353, 492, 696
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	3 cut(s)	159, 187, 331
TseFI	GTSAC	2 cut(s)	139, 436
TseI	GCWGC	3 cut(s)	56, 157, 763
Tsp45I	GTSAC	2 cut(s)	139, 436
TspDTI	ATGAA	3 cut(s)	63, 474, 528
TspRI	CASTG	3 cut(s)	159, 187, 331
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	2 cut(s)	603, 611
XceI	RCATGY	1 cut(s)	571
XspI	CTAG	2 cut(s)	227, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.