Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007039

Physical Location & Seq

Genomic Coordinates Forward (+)

7835768 .. 7838794

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGTTAAAGGCATTAGCATCTGGGCTATCAATTTCTTTGCTCCTCGTATGTGTTTCGGCGTCTGATAGTGGATTTCCGCGGTGCAATTGTGACGACGAGGGCAGCTTGTGGAGCATTGAGAGCATACTAGAATGTCAGCGAGTGAGCGATTTCTTGATTGCAGTGGCCTACTTTTCGATCCCCATTGAGCTGCTTTACTTTATCAGCTGCTCGAATGTACCTTTCAAATGGGTTCTCTTTCAGTTTATTGCCTTCATTGTGCTATGTGGAATGACACATTTGCTGAATGGCTGGACTTATGGTCCTCACCCTTTTCAGCTAATGCTTGCTCTCACGGTTTTCAAAATTCTCACTGCTCTGGTATCATGTGCCACTGCTATAACGCTCATCACTCTCATTCCTTTGCTTCTCAAAGTCAAAGTGAGAGAATTTATGTTGAAGAAGAAGACTTGGGACCTTGGAAGAGAGGTTGGGATTATAATGAGACAGAAAGAAGCTGGAATGCATGTTCGAATGCTTACCCAAGAGATTCGCAAGTCTCTTGATAGACATACAATATTGTCCACAACCCTCTTTGAGCTATCTGAGACATTGGGTTTGCAGTACTGTGCAGTTTGGATGCCTAATGAAATTAAAACGGAGATGATCCTGACCCATGAGTTGAAAGGGAGGAATTATTCTAATATGTACAACTTTTCTATACCAATAGGTGATCCAGATGTTGTACTTATCAAAGGGAGTGATGGGGTCAACATCCTTGGGCCAGATTCAATACTCGTGTCTGGAAGCAGTGGTGATTTTGGTGAGCCGGGACCAGTAGCTGCAATACGGATGCCAATGCTTCGGGTTTCCAATTTCAAAGGGGGTACCCCTGAGTTGATCCAGACTTGTTATGCGATTTTGGTTCTGGTTCTCCCTGGTGGACAACCTAGATCTTGGAGCAGCCAGGAACTTGAGATAATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCTTTATCCCATGCTGCAATCCTTGAAGAGTCCCAACTTATGCGGGAACAATTGGCTGAGCAAAATCGAGCCTTGCAACAGGCGAAAATGAATGCTATGTTGGCAAGCCAAGCAAGAAACTCATTCCAGAAGGTAATGAGTGATGGGATGAGAAGGCCAATGCACTCAGTTTTGGGGTTGCTTTCCATGATGCAGGATGAGAGTTTGAATAATGATCAACGAGTTATTGTTGATGCAATGGTGAGGACGAGCAATGTCCTATCGACCTTAATAAATGATGCGATGGACAATTCAGCCAAGGATAGTGGAAGATTTCCTTTAGAGATGAGATCTTTCCGGTTACATGCAATGATAAAAGAAGCAGCTTGCCTTGCCAAATGCTTGTGTGTGTATAGGGGATTTGGTTTTGCAATTGAGGTTGACAAGTCCTTAGCTGATCATGTAATGGGAGATGAAAGAAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAGCCTGCTGAATGGAAACCAGGGGGGAGGGTTGGTCGTGTTTCGGGTTTCTTCAGAGAATGGAAGTCAGGGGAGGAATGATCAAAGATGGGCACCTTGGAGACAAAACTCATCTGATGGTGGTGATGTATATGTTAGATTTGAGATTGGGATAAGCAACGGTGGTTCTCAATCAGATGGCACAAATCCAACGATGCAGCTTGTTGGTAAGAGATACAACAGTGAAGGAGTTGAGGAGAACTTGAGCTTCAACATTTGCAAAAGGCTAGTGCAGTTGATGCAAGGAAACATATGGGCAATCCCTAATCCTCAAGGATTTGCTCAAAGCATGGCACTTGTTCTCCGGTTTCAACCTCGGCAGTCCATTGCAATAACCATCTCTGAACCTGGAGGATCATCAGAGCACTCACATTCAAATTCTATTTTCAGAGGCTTGCAAGTTCTGTTAACAGATGAAGATGATGTGAATAGGGCTGTGACCCGGAAACTGCTTGAGAAGCTAGGTTGCAATGTAACCGCTGTTTCCTCTGGATTTGAATGCCTTTCTGCCATTGGTCCCTCTGGAGCTTCTGTCCAAGTCATTTTTCTAGATCTCCAAATGACCGAGTTGGATGGTTATGAAGTCGCAATGAGAATTAGAAAATTTCGAAGCCACACTTGGCCATTGATCATCGCTGTAACTGCCAGTGCAGATGAAGATGTTTGGGATAGATGCATGCAGATTGGGATCAATGGAATTATCCGAAAACCAGCATTGTTGCAAGGGATTGCCAGCGAGCTAAGAAGAGTCCTGGTGCAGGCAAACAAAATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

765

Amino Acids

84.55

Weight (kDa)

6.69

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	42 - 139	2.5e-42	Ethylene receptor 1-like, N-terminal domain
GAF	PF01590	182 - 332	9.4e-11	GAF domain
HisKA	PF00512	369 - 432	3.6e-09	His Kinase A (phospho-acceptor) domain
Response_reg	PF00072	641 - 748	5.3e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23150 AT3G23150
fragaria_vesca	FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030
malus_domestica	MD13G1209700.v1.1 MD16G1212500.v1.1 MD16G1212600.v1.1
prunus_persica	Prupe.1G034300_v2.0.a1
pyrus_communis	pycom13g18190 pycom16g17840 pycom16g17850
rosa_chinensis	RchiOBHm_Chr4g0391281
rosa_laevigata	RLG00000009875
rosa_multiflora	Rmu_co8511169.1_g000001 Rmu_sc0005322.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337040
rosa_rugosa	Rorug03G0335400
rosa_samantha	Rh4AG036300 Rh4BG031100 Rh4CG039600 Rh4DG034100
rosa_wichuraiana	Rw4G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	866
AccB1I	GGYRCC	2 cut(s)	866, 1573
AccII	CGCG	1 cut(s)	79
AciI	CCGC	4 cut(s)	77, 79, 1033, 1998
AclWI	GGATC	6 cut(s)	172, 640, 707, 874, 1882, 2216
AcoI	YGGCCR	1 cut(s)	2141
AcsI	RAATTY	4 cut(s)	345, 428, 1897, 2123
AcuI	CTGAAG	1 cut(s)	1518
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	5 cut(s)	219, 605, 689, 726, 868
AfiI	CCNNNNNNNGG	1 cut(s)	2278
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
AjuI	GAANNNNNNNTTGG	6 cut(s)	1073, 1105, 2049, 2081, 2122, 2154
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
Alw21I	GWGCWC	1 cut(s)	1887
Alw26I	GTCTC	4 cut(s)	478, 543, 581, 1576
AlwI	GGATC	6 cut(s)	172, 640, 707, 874, 1882, 2216
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	4 cut(s)	165, 761, 1145, 2141
ApeKI	GCWGC	8 cut(s)	102, 190, 207, 821, 942, 1004, 1352, 1678
ApoI	RAATTY	4 cut(s)	345, 428, 1897, 2123
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
Asp718I	GGTACC	1 cut(s)	866
AspS9I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
AsuC2I	CCSGG	2 cut(s)	810, 1963
AsuHPI	GGTGA	7 cut(s)	299, 722, 806, 815, 1243, 1474, 1616
AsuII	TTCGAA	2 cut(s)	511, 2128
AvaII	GGWCC	4 cut(s)	302, 454, 812, 2036
BaeGI	GKGCMC	1 cut(s)	1576
BaeI	ACNNNNGTAYC	2 cut(s)	1687, 1720
BalI	TGGCCA	1 cut(s)	2143
BanI	GGYRCC	2 cut(s)	866, 1573
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	1887
BbvI	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
BccI	CCATC	8 cut(s)	737, 1127, 1267, 1563, 1592, 1652, 1865, 2087
BciT130I	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
BclI	TGATCA	5 cut(s)	976, 1204, 1426, 1561, 2148
BcnI	CCSGG	2 cut(s)	810, 1963
BcoDI	GTCTC	4 cut(s)	478, 543, 581, 1576
BfaI	CTAG	5 cut(s)	128, 930, 1748, 1982, 2069
BglII	AGATCT	3 cut(s)	932, 1319, 2071
BisI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
BlpI	GCTNAGC	1 cut(s)	1047
BlsI	GCNGC	8 cut(s)	104, 192, 209, 823, 944, 1006, 1354, 1680
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
Bme18I	GGWCC	4 cut(s)	302, 454, 812, 2036
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmgT120I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
BmiI	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
BmrFI	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
BmsI	GCATC	9 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665, 1749, 2183
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	2 cut(s)	1890, 2064
Bpu10I	CCTNAGC	1 cut(s)	1420
Bpu1102I	GCTNAGC	1 cut(s)	1047
Bpu14I	TTCGAA	2 cut(s)	511, 2128
BpuEI	CTTGAG	4 cut(s)	974, 1744, 1776, 1994
BpuMI	CCSGG	2 cut(s)	810, 1963
BsaBI	GATNNNNATC	1 cut(s)	2207
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	8 cut(s)	77, 457, 757, 916, 1287, 1501, 1577, 1835
BsaWI	WCCGGW	2 cut(s)	1326, 1824
BsaXI	ACNNNNNCTCC	6 cut(s)	1500, 1530, 1806, 1836, 2037, 2067
Bsc4I	CCNNNNNNNGG	1 cut(s)	2278
Bse1I	ACTGG	2 cut(s)	815, 2166
Bse3DI	GCAATG	6 cut(s)	1233, 1249, 1344, 1845, 1996, 2115
Bse8I	GATNNNNATC	1 cut(s)	2207
BseBI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
BseDI	CCNNGG	8 cut(s)	77, 457, 757, 916, 1287, 1501, 1577, 1835
BseGI	GGATG	6 cut(s)	624, 753, 837, 1143, 1192, 2098
BseJI	GATNNNNATC	1 cut(s)	2207
BseLI	CCNNNNNNNGG	1 cut(s)	2278
BseMI	GCAATG	6 cut(s)	1233, 1249, 1344, 1845, 1996, 2115
BseMII	CTCAG	4 cut(s)	576, 864, 1038, 1170
BseNI	ACTGG	2 cut(s)	815, 2166
BseRI	GAGGAG	2 cut(s)	32, 1730
BseSI	GKGCMC	1 cut(s)	1576
BseXI	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
BsgI	GTGCAG	4 cut(s)	630, 1772, 2190, 2297
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	167, 763, 1147, 2143
BshNI	GGYRCC	2 cut(s)	866, 1573
BsiHKAI	GWGCWC	1 cut(s)	1887
BsiSI	CCGG	4 cut(s)	809, 1327, 1825, 1963
BslFI	GGGAC	4 cut(s)	467, 825, 1006, 2022
BslI	CCNNNNNNNGG	1 cut(s)	2278
BsmAI	GTCTC	4 cut(s)	478, 543, 581, 1576
BsmFI	GGGAC	4 cut(s)	467, 825, 1006, 2022
BsmI	GAATGC	4 cut(s)	507, 519, 1087, 2024
BsnI	GGCC	4 cut(s)	167, 763, 1147, 2143
Bsp119I	TTCGAA	2 cut(s)	511, 2128
Bsp1286I	GDGCHC	2 cut(s)	1576, 1887
Bsp1407I	TGTACA	1 cut(s)	687
Bsp1720I	GCTNAGC	1 cut(s)	1047
BspACI	CCGC	4 cut(s)	77, 79, 1033, 1998
BspANI	GGCC	4 cut(s)	167, 763, 1147, 2143
BspCNI	CTCAG	4 cut(s)	577, 865, 1039, 1169
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
BspPI	GGATC	6 cut(s)	172, 640, 707, 874, 1882, 2216
BspT104I	TTCGAA	2 cut(s)	511, 2128
BspT107I	GGYRCC	2 cut(s)	866, 1573
BsrDI	GCAATG	6 cut(s)	1233, 1249, 1344, 1845, 1996, 2115
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	815, 2166
BssECI	CCNNGG	8 cut(s)	77, 457, 757, 916, 1287, 1501, 1577, 1835
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
Bst4CI	ACNGT	4 cut(s)	337, 608, 1643, 1703
Bst6I	CTCTTC	3 cut(s)	457, 1011, 2260
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	1759
BstAUI	TGTACA	1 cut(s)	687
BstBI	TTCGAA	2 cut(s)	511, 2128
BstC8I	GCNNGC	9 cut(s)	327, 1096, 1357, 1487, 1916, 2198, 2254, 2258, 2280
BstDEI	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 2261
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	2276
BstF5I	GGATG	6 cut(s)	624, 753, 837, 1143, 1192, 2098
BstFNI	CGCG	1 cut(s)	79
BstMAI	GTCTC	4 cut(s)	478, 543, 581, 1576
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 120, 1091, 1100, 1361, 1759, 1978, 2162
BstNI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
BstNSI	RCATGY	3 cut(s)	509, 1337, 2200
BstSCI	CCNGG	7 cut(s)	808, 916, 945, 1500, 1867, 1961, 2271
BstSLI	GKGCMC	1 cut(s)	1576
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	3 cut(s)	932, 1319, 2071
BstYI	RGATCY	3 cut(s)	932, 1319, 2071
BsuRI	GGCC	4 cut(s)	167, 763, 1147, 2143
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	2 cut(s)	1286, 2137
BtsCI	GGATG	6 cut(s)	624, 753, 837, 1143, 1192, 2098
BtsI	GCAGTG	4 cut(s)	168, 351, 372, 796
BtsIMutI	CAGTG	6 cut(s)	168, 351, 372, 796, 1708, 2173
Cac8I	GCNNGC	9 cut(s)	327, 1096, 1357, 1487, 1916, 2198, 2254, 2258, 2280
CaiI	CAGNNNCTG	1 cut(s)	821
Cfr13I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	5 cut(s)	218, 604, 688, 725, 867
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviAII	CATG	9 cut(s)	366, 506, 656, 1001, 1177, 1334, 1430, 1810, 2197
CviQI	GTAC	5 cut(s)	218, 604, 688, 725, 867
DdeI	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 2261
DriI	GACNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	2141
Eam1104I	CTCTTC	3 cut(s)	457, 1011, 2260
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	3 cut(s)	457, 1011, 2260
Eco130I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
Eco47I	GGWCC	4 cut(s)	302, 454, 812, 2036
Eco57I	CTGAAG	1 cut(s)	1518
EcoNI	CCTNNNNNAGG	1 cut(s)	2276
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
EcoT14I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
EcoT22I	ATGCAT	2 cut(s)	507, 2198
ErhI	CCWWGG	4 cut(s)	457, 757, 1287, 1577
FaeI	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
FalI	AAGNNNNNCTT	4 cut(s)	1291, 1323, 2122, 2154
FaqI	GGGAC	4 cut(s)	467, 825, 1006, 2022
FatI	CATG	9 cut(s)	365, 505, 655, 1000, 1176, 1333, 1429, 1809, 2196
FauI	CCCGC	1 cut(s)	1026
FauNDI	CATATG	2 cut(s)	1473, 1772
FbaI	TGATCA	5 cut(s)	976, 1204, 1426, 1561, 2148
Fnu4HI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
FokI	GGATG	6 cut(s)	631, 740, 844, 1150, 1199, 2105
Fsp4HI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
FspBI	CTAG	5 cut(s)	128, 930, 1748, 1982, 2069
GluI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
GsuI	CTGGAG	2 cut(s)	1890, 2064
HaeIII	GGCC	4 cut(s)	167, 763, 1147, 2143
HapII	CCGG	4 cut(s)	809, 1327, 1825, 1963
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
HincII	GTYRAC	3 cut(s)	751, 1411, 1929
HindII	GTYRAC	3 cut(s)	751, 1411, 1929
HinfI	GANTC	4 cut(s)	529, 767, 1019, 2268
HpaI	GTTAAC	1 cut(s)	1929
HpaII	CCGG	4 cut(s)	809, 1327, 1825, 1963
HphI	GGTGA	7 cut(s)	299, 722, 806, 815, 1243, 1474, 1616
Hpy166II	GTNNAC	5 cut(s)	564, 751, 923, 1411, 1929
Hpy188I	TCNGA	9 cut(s)	64, 586, 1537, 1597, 1657, 1864, 1882, 1910, 2225
Hpy8I	GTNNAC	5 cut(s)	564, 751, 923, 1411, 1929
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	262, 1114, 1137, 1443, 1700
HpyCH4III	ACNGT	4 cut(s)	337, 608, 1643, 1703
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 120, 1091, 1100, 1361, 1759, 1978, 2162
HpyF3I	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 2261
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
KpnI	GGTACC	1 cut(s)	870
Ksp22I	TGATCA	5 cut(s)	976, 1204, 1426, 1561, 2148
KspAI	GTTAAC	1 cut(s)	1929
KspI	CCGCGG	1 cut(s)	80
LmnI	GCTCC	5 cut(s)	45, 111, 939, 1482, 2045
Lsp1109I	GCAGC	8 cut(s)	114, 177, 194, 808, 954, 991, 1364, 1690
LweI	GCATC	9 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665, 1749, 2183
MaeI	CTAG	5 cut(s)	128, 930, 1748, 1982, 2069
MaeIII	GTNAC	5 cut(s)	89, 1329, 1957, 1993, 2158
MfeI	CAATTG	3 cut(s)	85, 1040, 1401
MflI	RGATCY	3 cut(s)	932, 1319, 2071
MhlI	GDGCHC	2 cut(s)	1576, 1887
MlsI	TGGCCA	1 cut(s)	2143
MluNI	TGGCCA	1 cut(s)	2143
MlyI	GAGTC	2 cut(s)	1028, 2277
MmeI	TCCRAC	2 cut(s)	1694, 2070
Mox20I	TGGCCA	1 cut(s)	2143
Mph1103I	ATGCAT	2 cut(s)	507, 2198
MscI	TGGCCA	1 cut(s)	2143
MseI	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
Msp20I	TGGCCA	1 cut(s)	2143
MspA1I	CMGCKG	3 cut(s)	79, 207, 2000
MspI	CCGG	4 cut(s)	809, 1327, 1825, 1963
MspR9I	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
MunI	CAATTG	3 cut(s)	85, 1040, 1401
Mva1269I	GAATGC	4 cut(s)	507, 519, 1087, 2024
MvaI	CCWGG	5 cut(s)	918, 947, 1502, 1869, 2273
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	8 cut(s)	111, 120, 1091, 1100, 1361, 1759, 1978, 2162
NciI	CCSGG	2 cut(s)	810, 1963
NdeI	CATATG	2 cut(s)	1473, 1772
NlaIII	CATG	9 cut(s)	369, 509, 659, 1004, 1180, 1337, 1433, 1813, 2200
NlaIV	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
NmeAIII	GCCGAG	1 cut(s)	1816
NmuCI	GTSAC	2 cut(s)	89, 1957
NsiI	ATGCAT	2 cut(s)	507, 2198
NspI	RCATGY	3 cut(s)	509, 1337, 2200
NspV	TTCGAA	2 cut(s)	511, 2128
PaeI	GCATGC	1 cut(s)	2200
PctI	GAATGC	4 cut(s)	507, 519, 1087, 2024
PfeI	GAWTC	2 cut(s)	529, 767
PkrI	GCNGC	8 cut(s)	104, 192, 209, 823, 944, 1006, 1354, 1680
PleI	GAGTC	2 cut(s)	1027, 2276
PpsI	GAGTC	2 cut(s)	1027, 2276
PpuMI	RGGWCCY	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
PspGI	CCWGG	5 cut(s)	916, 945, 1500, 1867, 2271
PspN4I	GGNNCC	6 cut(s)	455, 813, 868, 1484, 1575, 2038
PspPI	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
PspPPI	RGGWCCY	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	3 cut(s)	932, 1319, 2071
PvuII	CAGCTG	1 cut(s)	207
RsaI	GTAC	5 cut(s)	219, 605, 689, 726, 868
RsaNI	GTAC	5 cut(s)	218, 604, 688, 725, 867
SacII	CCGCGG	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
SatI	GCNGC	8 cut(s)	103, 191, 208, 822, 943, 1005, 1353, 1679
Sau96I	GGNCC	5 cut(s)	302, 454, 761, 812, 2036
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	2 cut(s)	1028, 2277
ScrFI	CCNGG	7 cut(s)	810, 918, 947, 1502, 1869, 1963, 2273
SduI	GDGCHC	2 cut(s)	1576, 1887
SfaNI	GCATC	9 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665, 1749, 2183
Sfr303I	CCGCGG	1 cut(s)	80
SfuI	TTCGAA	2 cut(s)	511, 2128
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	4 cut(s)	302, 454, 812, 2036
SmlI	CTYRAG	4 cut(s)	953, 1723, 1791, 1973
SmoI	CTYRAG	4 cut(s)	953, 1723, 1791, 1973
SphI	GCATGC	1 cut(s)	2200
SsiI	CCGC	4 cut(s)	77, 79, 1033, 1998
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	5 cut(s)	128, 930, 1748, 1982, 2069
StyD4I	CCNGG	7 cut(s)	808, 916, 945, 1500, 1867, 1961, 2271
StyI	CCWWGG	4 cut(s)	457, 757, 1287, 1577
TaaI	ACNGT	4 cut(s)	337, 608, 1643, 1703
TaqI	TCGA	6 cut(s)	176, 212, 511, 1057, 1253, 2128
TaqII	GACCGA	1 cut(s)	2099
TatI	WGTACW	3 cut(s)	603, 687, 724
TfiI	GAWTC	2 cut(s)	529, 767
Tru1I	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
Tru9I	TTAA	5 cut(s)	5, 633, 963, 1259, 1928
TscAI	CASTG	6 cut(s)	168, 358, 379, 796, 1708, 2173
TseFI	GTSAC	2 cut(s)	89, 1957
TseI	GCWGC	8 cut(s)	102, 190, 207, 821, 942, 1004, 1352, 1678
Tsp45I	GTSAC	2 cut(s)	89, 1957
TspDTI	ATGAA	7 cut(s)	244, 642, 1094, 1458, 1950, 2115, 2190
TspGWI	ACGGA	2 cut(s)	653, 844
TspRI	CASTG	6 cut(s)	168, 358, 379, 796, 1708, 2173
VpaK11BI	GGWCC	4 cut(s)	302, 454, 812, 2036
XagI	CCTNNNNNAGG	1 cut(s)	2276
XapI	RAATTY	4 cut(s)	345, 428, 1897, 2123
XbaI	TCTAGA	1 cut(s)	2068
XceI	RCATGY	3 cut(s)	509, 1337, 2200
XspI	CTAG	5 cut(s)	128, 930, 1748, 1982, 2069
ZrmI	AGTACT	1 cut(s)	605
Zsp2I	ATGCAT	2 cut(s)	507, 2198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.