Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007039

Physical Location & Seq

Genomic Coordinates Forward (+)

8083305 .. 8088595

Gene Structure 5291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGTTAAAGGCATTAGCATCTGGGCTATCAATTTCTTTGCTCCTTGTATGTGTTTCGGCGTCTGATAGTGGATTTGCGCGGTGCAATTGTGACGACGAGGGCAGCTTGTGGAGCATTGAGAGCATACTAGAATGTCAGCGAGTGAGCGATTTCTTGATTGCAGTGGCCTACTTTTCGATCCCCATTGAGCTGCTTTACTTTATCAGCTGCTCGAATGTACCTTTCAAATGGGTTCTCTTTCAGTTTATTGCCTTCATTGTGCTATGTGGCATGACACATTTGCTGAATGGCTGGACTTATGGTCCTCACCCTTTTCAGCTAATGCTTGCTCTCACGGTTTTCAAAATTCTCACTGCTCTGGTATCATGTGCCACTGCTATAACGCTCATCACTCTCATTCCTTTGCTTCTCAAAGTCAAAGTGAGAGAATTTATGTTGAAGAAGAAGACTTGGGACCTTGGAAGAGAGGTTGGGATTATAATGAGACAGAAAGAAGCTGGAATGCATGTTCGAATGCTTACCCAAGAGATTCGCAAGTCTCTTGATAGACATACAATATTGTCCACAACCCTCTTTGAGCTATCTGAGACATTGGGTTTGCAGTACTGTGCAGTTTGGATGCCTAATGAAATTAAAACGGAGATGATCCTGACCCATGAGTTGAAAGGGAGGAATTATTCTAATATGTACAACTTTTCTATACCAATAGGTGATCCAGATGTTGTACTTATCAAAGGGAGTGATGGGGTCAACATCCTTGGGCCAGATTCAATACTCGTGTCCGGAAGCAGTGGTGATTTTGGTGAGCCGGGACCAGTAGCTGCAATACGGATGCCAATGCTTCGGGTTTCCAATTTCAAAGGGGGAACCCCTGAGTTGATCCAGACTTGTTATGCGATTTTGGTTCTGGTTCTCCCTGGTGGACAGCCCAGATCTTGGAGCAGCCAGGAACTTGAGATAATTAAGGTGGTTGCTGATCAGGTGGCTGTGGCTTTATCCCATGCTGCAATCCTTGAAGAGTCCCAACTTATGCGGGAACAATTGGCTGAGCAAAATCGAGCCTTGCAACAGGCGAAAATGAATGCTATGTTGGCAAGCCAAGCAAGAAACTCATTCCAGAAGGTAATGAGTGATGGGATGAGAAGGCCAATGCACTCAGTTTTGGGGTTGCTTTCCATGATGCAGGATGAGAGTTTGAATAATGATCAACGAGTTATTGTTGATGCAATGGTGAGGACGAGCAATGTCCTATCGACCTTAATAAATGATGCGATGGACAATTCAGCCAAGGATAGTGGAAGATTTCCTTTAGAGATGAGATCTTTCCGGTTACATGCAATGATAAAAGAAGCAGCTTGCCTTGCCAAATGCTTGTGTGTGTATAGGGGATTTGGTTTTGCAATTGAGGTTGACAAGTCCTTAGCTGATCATGTAACGGGAGATGAAAGAAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAGCCTGCTGAATGGAAACCAGGGGGGAGGGTTGGTCGTGTTTCGGGTTTCTTCAGAGAATGGAAGTCAGGGGAGGAGTGATCAAAGATGGGCACCTTGGAGACAAAACTCATCTGATGGTGGTGATGTATATGTTAGATTCGAGATTGGGATAAGCAACAGTGGTTCTCAGTCAGATGGCACAAATCCAACGATGCAGTTTGTTGGTAAGAGATACAACAGTGAAGGAGTTGAGGAGAACTTGAGCTTCAACATTTGCAAAAGGCTAGTGCAGGTGAGGATGATAAACTTTTTGTGTCTGTGTGTGGGTGTGATGGCCTGTGGTATATATTTATTTTCTTCAGCAGTCAAGAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

613

Amino Acids

67.85

Weight (kDa)

7.1

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	42 - 139	1.8e-42	Ethylene receptor 1-like, N-terminal domain
GAF	PF01590	182 - 332	6.4e-11	GAF domain
HisKA	PF00512	369 - 432	2.7e-09	His Kinase A (phospho-acceptor) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23150 AT3G23150
fragaria_vesca	FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030
malus_domestica	MD13G1209700.v1.1 MD16G1212500.v1.1 MD16G1212600.v1.1
prunus_persica	Prupe.1G034300_v2.0.a1
pyrus_communis	pycom13g18190 pycom16g17840 pycom16g17850
rosa_chinensis	RchiOBHm_Chr4g0391281
rosa_laevigata	RLG00000009875
rosa_multiflora	Rmu_co8511169.1_g000001 Rmu_sc0005322.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337040
rosa_rugosa	Rorug03G0335400
rosa_samantha	Rh4AG036300 Rh4BG031100 Rh4CG039600 Rh4DG034100
rosa_wichuraiana	Rw4G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AarI	CACCTGC	1 cut(s)	1744
Acc36I	ACCTGC	1 cut(s)	1744
AccB1I	GGYRCC	1 cut(s)	1573
AccB7I	CCANNNNNTGG	1 cut(s)	936
AccII	CGCG	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	782
AciI	CCGC	2 cut(s)	79, 1033
AclWI	GGATC	4 cut(s)	172, 640, 707, 874
AcsI	RAATTY	3 cut(s)	345, 428, 1834
AcuI	CTGAAG	2 cut(s)	1518, 1806
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	4 cut(s)	219, 605, 689, 726
AfiI	CCNNNNNNNGG	1 cut(s)	936
AgsI	TTSAA	9 cut(s)	226, 343, 439, 664, 771, 859, 1016, 1198, 1732
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	3 cut(s)	916, 945, 1500
AjuI	GAANNNNNNNTTGG	2 cut(s)	1073, 1105
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
Alw26I	GTCTC	4 cut(s)	478, 543, 581, 1576
AlwI	GGATC	4 cut(s)	172, 640, 707, 874
AlwNI	CAGNNNCTG	1 cut(s)	821
Aor13HI	TCCGGA	1 cut(s)	782
AoxI	GGCC	4 cut(s)	165, 761, 1145, 1797
ApeKI	GCWGC	7 cut(s)	102, 190, 207, 821, 942, 1004, 1352
ApoI	RAATTY	3 cut(s)	345, 428, 1834
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	4 cut(s)	302, 454, 761, 812
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	8 cut(s)	299, 722, 806, 815, 1243, 1474, 1616, 1768
AsuII	TTCGAA	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	302, 454, 812
BaeGI	GKGCMC	1 cut(s)	1576
BaeI	ACNNNNGTAYC	2 cut(s)	1687, 1720
BanI	GGYRCC	1 cut(s)	1573
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	7 cut(s)	114, 177, 194, 808, 954, 991, 1364
BccI	CCATC	7 cut(s)	737, 1127, 1267, 1563, 1592, 1652, 1789
BciT130I	CCWGG	3 cut(s)	918, 947, 1502
BclI	TGATCA	4 cut(s)	976, 1204, 1426, 1561
BcnI	CCSGG	1 cut(s)	810
BcoDI	GTCTC	4 cut(s)	478, 543, 581, 1576
BfaI	CTAG	2 cut(s)	128, 1748
BfuAI	ACCTGC	1 cut(s)	1744
BglII	AGATCT	2 cut(s)	932, 1319
BisI	GCNGC	7 cut(s)	103, 191, 208, 822, 943, 1005, 1353
BlpI	GCTNAGC	1 cut(s)	1047
BlsI	GCNGC	7 cut(s)	104, 192, 209, 823, 944, 1006, 1354
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	4 cut(s)	810, 918, 947, 1502
Bme18I	GGWCC	3 cut(s)	302, 454, 812
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmgT120I	GGNCC	4 cut(s)	302, 454, 761, 812
BmiI	GGNNCC	5 cut(s)	455, 813, 868, 1484, 1575
BmrFI	CCNGG	4 cut(s)	810, 918, 947, 1502
BmsI	GCATC	7 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665
BpiI	GAAGAC	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	1420
Bpu1102I	GCTNAGC	1 cut(s)	1047
Bpu14I	TTCGAA	1 cut(s)	511
BpuEI	CTTGAG	2 cut(s)	974, 1744
BpuMI	CCSGG	1 cut(s)	810
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	6 cut(s)	457, 757, 916, 1287, 1501, 1577
BsaWI	WCCGGW	2 cut(s)	782, 1326
BsaXI	ACNNNNNCTCC	2 cut(s)	1500, 1530
Bsc4I	CCNNNNNNNGG	1 cut(s)	936
Bse1I	ACTGG	1 cut(s)	815
Bse3DI	GCAATG	3 cut(s)	1233, 1249, 1344
BseAI	TCCGGA	1 cut(s)	782
BseBI	CCWGG	3 cut(s)	918, 947, 1502
BseDI	CCNNGG	6 cut(s)	457, 757, 916, 1287, 1501, 1577
BseGI	GGATG	6 cut(s)	624, 753, 837, 1143, 1192, 1767
BseLI	CCNNNNNNNGG	1 cut(s)	936
BseMI	GCAATG	3 cut(s)	1233, 1249, 1344
BseMII	CTCAG	5 cut(s)	576, 864, 1038, 1170, 1664
BseNI	ACTGG	1 cut(s)	815
BseRI	GAGGAG	2 cut(s)	1570, 1730
BseSI	GKGCMC	1 cut(s)	1576
BseXI	GCAGC	7 cut(s)	114, 177, 194, 808, 954, 991, 1364
BsgI	GTGCAG	2 cut(s)	630, 1772
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	167, 763, 1147, 1799
BshNI	GGYRCC	1 cut(s)	1573
BsiSI	CCGG	3 cut(s)	783, 809, 1327
BslFI	GGGAC	3 cut(s)	467, 825, 1006
BslI	CCNNNNNNNGG	1 cut(s)	936
BsmAI	GTCTC	4 cut(s)	478, 543, 581, 1576
BsmFI	GGGAC	3 cut(s)	467, 825, 1006
BsmI	GAATGC	3 cut(s)	507, 519, 1087
BsnI	GGCC	4 cut(s)	167, 763, 1147, 1799
Bsp119I	TTCGAA	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	1576
Bsp13I	TCCGGA	1 cut(s)	782
Bsp1407I	TGTACA	1 cut(s)	687
Bsp1720I	GCTNAGC	1 cut(s)	1047
BspACI	CCGC	2 cut(s)	79, 1033
BspANI	GGCC	4 cut(s)	167, 763, 1147, 1799
BspCNI	CTCAG	5 cut(s)	577, 865, 1039, 1169, 1663
BspEI	TCCGGA	1 cut(s)	782
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	5 cut(s)	455, 813, 868, 1484, 1575
BspMI	ACCTGC	1 cut(s)	1744
BspPI	GGATC	4 cut(s)	172, 640, 707, 874
BspT104I	TTCGAA	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	1573
BsrDI	GCAATG	3 cut(s)	1233, 1249, 1344
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	815
BssECI	CCNNGG	6 cut(s)	457, 757, 916, 1287, 1501, 1577
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	3 cut(s)	918, 947, 1502
Bst4CI	ACNGT	4 cut(s)	337, 608, 1643, 1703
Bst6I	CTCTTC	2 cut(s)	457, 1011
BstACI	GRCGYC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	687
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	4 cut(s)	327, 1096, 1357, 1487
BstDEI	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 1650
BstF5I	GGATG	6 cut(s)	624, 753, 837, 1143, 1192, 1767
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	79
BstMAI	GTCTC	4 cut(s)	478, 543, 581, 1576
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 120, 1091, 1100, 1361
BstNI	CCWGG	3 cut(s)	918, 947, 1502
BstNSI	RCATGY	2 cut(s)	509, 1337
BstSCI	CCNGG	4 cut(s)	808, 916, 945, 1500
BstSLI	GKGCMC	1 cut(s)	1576
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	7 cut(s)	114, 177, 194, 808, 954, 991, 1364
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	932, 1319
BstYI	RGATCY	2 cut(s)	932, 1319
BsuRI	GGCC	4 cut(s)	167, 763, 1147, 1799
BtgZI	GCGATG	1 cut(s)	1286
BtsCI	GGATG	6 cut(s)	624, 753, 837, 1143, 1192, 1767
BtsI	GCAGTG	4 cut(s)	168, 351, 372, 796
BtsIMutI	CAGTG	6 cut(s)	168, 351, 372, 796, 1648, 1708
BveI	ACCTGC	1 cut(s)	1744
Cac8I	GCNNGC	4 cut(s)	327, 1096, 1357, 1487
CaiI	CAGNNNCTG	1 cut(s)	821
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	4 cut(s)	302, 454, 761, 812
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	4 cut(s)	218, 604, 688, 725
CspCI	CAANNNNNGTGG	2 cut(s)	1276, 1311
CviAII	CATG	8 cut(s)	271, 366, 506, 656, 1001, 1177, 1334, 1430
CviQI	GTAC	4 cut(s)	218, 604, 688, 725
DdeI	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 1650
DriI	GACNNNNNGTC	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	457, 1011
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	2 cut(s)	457, 1011
Eco130I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
Eco47I	GGWCC	3 cut(s)	302, 454, 812
Eco57I	CTGAAG	2 cut(s)	1518, 1806
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	3 cut(s)	916, 945, 1500
EcoT14I	CCWWGG	4 cut(s)	457, 757, 1287, 1577
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	4 cut(s)	457, 757, 1287, 1577
FaeI	CATG	8 cut(s)	274, 369, 509, 659, 1004, 1180, 1337, 1433
FalI	AAGNNNNNCTT	2 cut(s)	1291, 1323
FaqI	GGGAC	3 cut(s)	467, 825, 1006
FatI	CATG	8 cut(s)	270, 365, 505, 655, 1000, 1176, 1333, 1429
FauI	CCCGC	1 cut(s)	1026
FauNDI	CATATG	1 cut(s)	1473
FbaI	TGATCA	4 cut(s)	976, 1204, 1426, 1561
Fnu4HI	GCNGC	7 cut(s)	103, 191, 208, 822, 943, 1005, 1353
FokI	GGATG	6 cut(s)	631, 740, 844, 1150, 1199, 1774
Fsp4HI	GCNGC	7 cut(s)	103, 191, 208, 822, 943, 1005, 1353
FspBI	CTAG	2 cut(s)	128, 1748
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	7 cut(s)	103, 191, 208, 822, 943, 1005, 1353
HaeIII	GGCC	4 cut(s)	167, 763, 1147, 1799
HapII	CCGG	3 cut(s)	783, 809, 1327
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	8 cut(s)	274, 369, 509, 659, 1004, 1180, 1337, 1433
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	2 cut(s)	751, 1411
HindII	GTYRAC	2 cut(s)	751, 1411
HinfI	GANTC	4 cut(s)	529, 767, 1019, 1620
HpaII	CCGG	3 cut(s)	783, 809, 1327
HphI	GGTGA	8 cut(s)	299, 722, 806, 815, 1243, 1474, 1616, 1768
Hpy166II	GTNNAC	4 cut(s)	564, 751, 923, 1411
Hpy188I	TCNGA	5 cut(s)	64, 586, 1537, 1597, 1657
Hpy188III	TCNNGA	9 cut(s)	154, 542, 649, 716, 783, 883, 1117, 1624, 1831
Hpy8I	GTNNAC	4 cut(s)	564, 751, 923, 1411
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	262, 1114, 1137, 1443, 1700
HpyCH4III	ACNGT	4 cut(s)	337, 608, 1643, 1703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 120, 1091, 1100, 1361
HpyF3I	CTNAG	6 cut(s)	585, 873, 1047, 1156, 1420, 1650
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	8 cut(s)	274, 369, 509, 659, 1004, 1180, 1337, 1433
HspAI	GCGC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	782
Ksp22I	TGATCA	4 cut(s)	976, 1204, 1426, 1561
LmnI	GCTCC	4 cut(s)	45, 111, 939, 1482
Lsp1109I	GCAGC	7 cut(s)	114, 177, 194, 808, 954, 991, 1364
LweI	GCATC	7 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665
MaeI	CTAG	2 cut(s)	128, 1748
MaeIII	GTNAC	3 cut(s)	89, 1329, 1432
MboII	GAAGA	8 cut(s)	451, 454, 457, 474, 1028, 1311, 1524, 1812
MfeI	CAATTG	3 cut(s)	85, 1040, 1401
MflI	RGATCY	2 cut(s)	932, 1319
MhlI	GDGCHC	1 cut(s)	1576
MlyI	GAGTC	1 cut(s)	1028
MmeI	TCCRAC	1 cut(s)	1694
Mph1103I	ATGCAT	1 cut(s)	507
MroI	TCCGGA	1 cut(s)	782
MseI	TTAA	4 cut(s)	5, 633, 963, 1259
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	3 cut(s)	783, 809, 1327
MspR9I	CCNGG	4 cut(s)	810, 918, 947, 1502
MunI	CAATTG	3 cut(s)	85, 1040, 1401
Mva1269I	GAATGC	3 cut(s)	507, 519, 1087
MvaI	CCWGG	3 cut(s)	918, 947, 1502
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	5 cut(s)	111, 120, 1091, 1100, 1361
NciI	CCSGG	1 cut(s)	810
NdeI	CATATG	1 cut(s)	1473
NlaIII	CATG	8 cut(s)	274, 369, 509, 659, 1004, 1180, 1337, 1433
NlaIV	GGNNCC	5 cut(s)	455, 813, 868, 1484, 1575
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	2 cut(s)	509, 1337
NspV	TTCGAA	1 cut(s)	511
PaqCI	CACCTGC	1 cut(s)	1744
PctI	GAATGC	3 cut(s)	507, 519, 1087
PfeI	GAWTC	3 cut(s)	529, 767, 1620
PflMI	CCANNNNNTGG	1 cut(s)	936
PkrI	GCNGC	7 cut(s)	104, 192, 209, 823, 944, 1006, 1354
PleI	GAGTC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	1027
PpuMI	RGGWCCY	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	3 cut(s)	916, 945, 1500
PspGI	CCWGG	3 cut(s)	916, 945, 1500
PspN4I	GGNNCC	5 cut(s)	455, 813, 868, 1484, 1575
PspPI	GGNCC	4 cut(s)	302, 454, 761, 812
PspPPI	RGGWCCY	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	2 cut(s)	932, 1319
PvuII	CAGCTG	1 cut(s)	207
RsaI	GTAC	4 cut(s)	219, 605, 689, 726
RsaNI	GTAC	4 cut(s)	218, 604, 688, 725
SaqAI	TTAA	4 cut(s)	5, 633, 963, 1259
SatI	GCNGC	7 cut(s)	103, 191, 208, 822, 943, 1005, 1353
Sau96I	GGNCC	4 cut(s)	302, 454, 761, 812
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	1 cut(s)	1028
ScrFI	CCNGG	4 cut(s)	810, 918, 947, 1502
SduI	GDGCHC	1 cut(s)	1576
SfaNI	GCATC	7 cut(s)	26, 609, 822, 1170, 1213, 1258, 1665
SfuI	TTCGAA	1 cut(s)	511
SinI	GGWCC	3 cut(s)	302, 454, 812
SmlI	CTYRAG	2 cut(s)	953, 1723
SmoI	CTYRAG	2 cut(s)	953, 1723
SsiI	CCGC	2 cut(s)	79, 1033
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	2 cut(s)	128, 1748
StyD4I	CCNGG	4 cut(s)	808, 916, 945, 1500
StyI	CCWWGG	4 cut(s)	457, 757, 1287, 1577
TaaI	ACNGT	4 cut(s)	337, 608, 1643, 1703
TaqI	TCGA	6 cut(s)	176, 212, 511, 1057, 1253, 1623
TatI	WGTACW	3 cut(s)	603, 687, 724
TfiI	GAWTC	3 cut(s)	529, 767, 1620
Tru1I	TTAA	4 cut(s)	5, 633, 963, 1259
Tru9I	TTAA	4 cut(s)	5, 633, 963, 1259
TscAI	CASTG	6 cut(s)	168, 358, 379, 796, 1648, 1708
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	7 cut(s)	102, 190, 207, 821, 942, 1004, 1352
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	244, 642, 1094, 1458
TspGWI	ACGGA	2 cut(s)	653, 844
TspRI	CASTG	6 cut(s)	168, 358, 379, 796, 1648, 1708
Van91I	CCANNNNNTGG	1 cut(s)	936
VpaK11BI	GGWCC	3 cut(s)	302, 454, 812
XapI	RAATTY	3 cut(s)	345, 428, 1834
XceI	RCATGY	2 cut(s)	509, 1337
XspI	CTAG	2 cut(s)	128, 1748
ZrmI	AGTACT	1 cut(s)	605
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.