Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007039

Physical Location & Seq

Genomic Coordinates Forward (+)

5024270 .. 5029163

Gene Structure 4894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTTAAAGGCATTAGCATCTGGGCTATCAATTTCTTTGCTCCTCGTATGTGTTTCGGCGACCGATAATGGATTTCCGCGGTGCAATTGTGACGACGAGGGCAGCTTGTGGAGCATTGAGAGCATACTAGAATGTCAGCGAGTGAGCGATTTCTTGATTGCGGTGGCCTACTTTTCGATCCCCATTGAGCTGCTTTACTTTATCAGCTGCTCGAATGTACCTTTCAAATGGGTTCTCTTTCAGTTTATTGCCTTCATTGTGCTATGTGGAATGACACATTTGCTGAATGGCTGGACTTATGGGCCTCACCCTTTTCAGCTAATGCTTGCTCTCACAGTTTTCAAAATTCTCACTGCTCTGGTATCATGTGCCACTGCTATAACGCTCATCACTCTCATTCCTTTGCTTCTCAAAGTCAAAGTGAGAGAATTTATGTTGAAGAAGAAGACTTGGGACCTTGGAAGAGAGGTTGGGATTATAATGAGACAGAAAGAAGCTGGAATGCATGTTCGAATGCTTACCCAAGAGATTCGCAAGTCTCTTGATAGACATACAATATTGTCCACAACCCTCTTTGAGCTATCTGAGACATTGGGTTTGCAGTACTGTGCAGTTTGGATGCCTAATGAAATTAAAACGTTGATGATCCTGACCCATGAGTTGAAAGGGAGGAATTATTCTAATATGTACAACTTTTCTATACCAATAGGTGATCCAGATGTTGTACTTATCAAAGGGAGTGATGGGGTCAACATCCTTGGGCCAGATTCAGCACTCGTGTCTGGAAGCAGTGGTGATTTTGGTGAGCCGGGACCAGTAGCTGCAATACGGATGCCAATGCTTCGGGTTTCCAATTTCAAAGGGGGACCCCTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

292

Amino Acids

32.37

Weight (kDa)

7.56

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	42 - 139	4.9e-43	Ethylene receptor 1-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23150 AT3G23150
fragaria_vesca	FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030 FvH4_4g03030
malus_domestica	MD13G1209700.v1.1 MD16G1212500.v1.1 MD16G1212600.v1.1
prunus_persica	Prupe.1G034300_v2.0.a1
pyrus_communis	pycom13g18190 pycom16g17840 pycom16g17850
rosa_chinensis	RchiOBHm_Chr4g0391281
rosa_laevigata	RLG00000009875
rosa_multiflora	Rmu_co8511169.1_g000001 Rmu_sc0005322.1_g000018
rosa_roxburghii	Rroxscaffold_5G00337040
rosa_rugosa	Rorug03G0335400
rosa_samantha	Rh4AG036300 Rh4BG031100 Rh4CG039600 Rh4DG034100
rosa_wichuraiana	Rw4G002850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AccII	CGCG	1 cut(s)	79
AciI	CCGC	3 cut(s)	77, 79, 161
AclI	AACGTT	1 cut(s)	638
AclWI	GGATC	3 cut(s)	172, 640, 707
AcsI	RAATTY	2 cut(s)	345, 428
AfaI	GTAC	4 cut(s)	219, 605, 689, 726
AgsI	TTSAA	5 cut(s)	226, 343, 439, 664, 859
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
AluBI	AGCT	7 cut(s)	105, 190, 207, 319, 497, 580, 821
AluI	AGCT	7 cut(s)	105, 190, 207, 319, 497, 580, 821
Alw26I	GTCTC	3 cut(s)	478, 543, 581
AlwI	GGATC	3 cut(s)	172, 640, 707
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	3 cut(s)	165, 302, 761
ApeKI	GCWGC	4 cut(s)	102, 190, 207, 821
ApoI	RAATTY	2 cut(s)	345, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
AspS9I	GGNCC	5 cut(s)	302, 454, 761, 812, 866
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	4 cut(s)	299, 722, 806, 815
AsuII	TTCGAA	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	454, 812, 866
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	114, 177, 194, 808
BccI	CCATC	1 cut(s)	737
BcnI	CCSGG	1 cut(s)	810
BcoDI	GTCTC	3 cut(s)	478, 543, 581
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	4 cut(s)	103, 191, 208, 822
BlsI	GCNGC	4 cut(s)	104, 192, 209, 823
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	3 cut(s)	454, 812, 866
BmgT120I	GGNCC	5 cut(s)	302, 454, 761, 812, 866
BmiI	GGNNCC	4 cut(s)	455, 813, 867, 868
BmrFI	CCNGG	1 cut(s)	810
BmsI	GCATC	3 cut(s)	26, 609, 822
BpiI	GAAGAC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	810
BsaJI	CCNNGG	3 cut(s)	77, 457, 757
Bse1I	ACTGG	1 cut(s)	815
BseDI	CCNNGG	3 cut(s)	77, 457, 757
BseGI	GGATG	3 cut(s)	624, 753, 837
BseMII	CTCAG	2 cut(s)	576, 863
BseNI	ACTGG	1 cut(s)	815
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	4 cut(s)	114, 177, 194, 808
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	167, 304, 763
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	809
BslFI	GGGAC	2 cut(s)	467, 825
BsmAI	GTCTC	3 cut(s)	478, 543, 581
BsmFI	GGGAC	2 cut(s)	467, 825
BsmI	GAATGC	2 cut(s)	507, 519
BsnI	GGCC	3 cut(s)	167, 304, 763
Bsp119I	TTCGAA	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	177, 645, 712
BspACI	CCGC	3 cut(s)	77, 79, 161
BspANI	GGCC	3 cut(s)	167, 304, 763
BspCNI	CTCAG	2 cut(s)	577, 864
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	4 cut(s)	455, 813, 867, 868
BspPI	GGATC	3 cut(s)	172, 640, 707
BspT104I	TTCGAA	1 cut(s)	511
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	815
BssECI	CCNNGG	3 cut(s)	77, 457, 757
BssMI	GATC	3 cut(s)	177, 645, 712
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	2 cut(s)	457, 757
Bst2BI	CACGAG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	337, 608
Bst6I	CTCTTC	1 cut(s)	457
BstAUI	TGTACA	1 cut(s)	687
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	585, 872
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	624, 753, 837
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	3 cut(s)	180, 648, 715
BstMAI	GTCTC	3 cut(s)	478, 543, 581
BstMBI	GATC	3 cut(s)	177, 645, 712
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 120
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	808
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	114, 177, 194, 808
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	167, 304, 763
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	624, 753, 837
BtsI	GCAGTG	3 cut(s)	351, 372, 796
BtsIMutI	CAGTG	3 cut(s)	351, 372, 796
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	821
Cfr13I	GGNCC	5 cut(s)	302, 454, 761, 812, 866
Cfr42I	CCGCGG	1 cut(s)	80
Csp6I	GTAC	4 cut(s)	218, 604, 688, 725
CviAII	CATG	3 cut(s)	366, 506, 656
CviQI	GTAC	4 cut(s)	218, 604, 688, 725
DdeI	CTNAG	2 cut(s)	585, 872
DpnI	GATC	3 cut(s)	179, 647, 714
DpnII	GATC	3 cut(s)	177, 645, 712
Eam1104I	CTCTTC	1 cut(s)	457
EarI	CTCTTC	1 cut(s)	457
Eco130I	CCWWGG	2 cut(s)	457, 757
Eco47I	GGWCC	3 cut(s)	454, 812, 866
EcoO109I	RGGNCCY	2 cut(s)	454, 866
EcoT14I	CCWWGG	2 cut(s)	457, 757
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	457, 757
FaeI	CATG	3 cut(s)	369, 509, 659
FaqI	GGGAC	2 cut(s)	467, 825
FatI	CATG	3 cut(s)	365, 505, 655
Fnu4HI	GCNGC	4 cut(s)	103, 191, 208, 822
FokI	GGATG	3 cut(s)	631, 740, 844
Fsp4HI	GCNGC	4 cut(s)	103, 191, 208, 822
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	4 cut(s)	103, 191, 208, 822
HaeIII	GGCC	3 cut(s)	167, 304, 763
HapII	CCGG	1 cut(s)	809
Hin1II	CATG	3 cut(s)	369, 509, 659
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	2 cut(s)	529, 767
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	4 cut(s)	299, 722, 806, 815
Hpy166II	GTNNAC	2 cut(s)	564, 751
Hpy188I	TCNGA	1 cut(s)	586
Hpy188III	TCNNGA	5 cut(s)	154, 542, 649, 716, 783
Hpy8I	GTNNAC	2 cut(s)	564, 751
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	337, 608
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	5 cut(s)	84, 505, 601, 611, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 120
HpyF3I	CTNAG	2 cut(s)	585, 872
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	3 cut(s)	369, 509, 659
KflI	GGGWCCC	1 cut(s)	866
KspI	CCGCGG	1 cut(s)	80
Kzo9I	GATC	3 cut(s)	177, 645, 712
LmnI	GCTCC	2 cut(s)	45, 111
Lsp1109I	GCAGC	4 cut(s)	114, 177, 194, 808
LweI	GCATC	3 cut(s)	26, 609, 822
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	638
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	179, 647, 714
MboI	GATC	3 cut(s)	177, 645, 712
MboII	GAAGA	4 cut(s)	451, 454, 457, 474
MfeI	CAATTG	1 cut(s)	85
MluCI	AATT	7 cut(s)	30, 85, 345, 428, 630, 673, 853
MnlI	CCTC	6 cut(s)	53, 91, 315, 460, 581, 663
Mph1103I	ATGCAT	1 cut(s)	507
MseI	TTAA	2 cut(s)	5, 633
MspA1I	CMGCKG	2 cut(s)	79, 207
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	1 cut(s)	810
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	2 cut(s)	507, 519
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	111, 120
NciI	CCSGG	1 cut(s)	810
NdeII	GATC	3 cut(s)	177, 645, 712
NlaIII	CATG	3 cut(s)	369, 509, 659
NlaIV	GGNNCC	4 cut(s)	455, 813, 867, 868
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	507
NspI	RCATGY	1 cut(s)	509
NspV	TTCGAA	1 cut(s)	511
PctI	GAATGC	2 cut(s)	507, 519
PfeI	GAWTC	2 cut(s)	529, 767
PkrI	GCNGC	4 cut(s)	104, 192, 209, 823
PpuMI	RGGWCCY	2 cut(s)	454, 866
PsiI	TTATAA	1 cut(s)	479
Psp1406I	AACGTT	1 cut(s)	638
Psp5II	RGGWCCY	2 cut(s)	454, 866
PspN4I	GGNNCC	4 cut(s)	455, 813, 867, 868
PspPI	GGNCC	5 cut(s)	302, 454, 761, 812, 866
PspPPI	RGGWCCY	2 cut(s)	454, 866
PstNI	CAGNNNCTG	1 cut(s)	821
PvuII	CAGCTG	1 cut(s)	207
RsaI	GTAC	4 cut(s)	219, 605, 689, 726
RsaNI	GTAC	4 cut(s)	218, 604, 688, 725
SacII	CCGCGG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	5, 633
SatI	GCNGC	4 cut(s)	103, 191, 208, 822
Sau3AI	GATC	3 cut(s)	177, 645, 712
Sau96I	GGNCC	5 cut(s)	302, 454, 761, 812, 866
ScaI	AGTACT	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	810
SfaNI	GCATC	3 cut(s)	26, 609, 822
Sfr303I	CCGCGG	1 cut(s)	80
SfuI	TTCGAA	1 cut(s)	511
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	3 cut(s)	454, 812, 866
Sse9I	AATT	7 cut(s)	30, 85, 345, 428, 630, 673, 853
SsiI	CCGC	3 cut(s)	77, 79, 161
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	808
StyI	CCWWGG	2 cut(s)	457, 757
TaaI	ACNGT	2 cut(s)	337, 608
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	3 cut(s)	176, 212, 511
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	7 cut(s)	30, 85, 345, 428, 630, 673, 853
TatI	WGTACW	3 cut(s)	603, 687, 724
TfiI	GAWTC	2 cut(s)	529, 767
Tru1I	TTAA	2 cut(s)	5, 633
Tru9I	TTAA	2 cut(s)	5, 633
TscAI	CASTG	3 cut(s)	358, 379, 796
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	4 cut(s)	102, 190, 207, 821
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	244, 642
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	3 cut(s)	358, 379, 796
VpaK11BI	GGWCC	3 cut(s)	454, 812, 866
XapI	RAATTY	2 cut(s)	345, 428
XceI	RCATGY	1 cut(s)	509
XspI	CTAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	605
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.