Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008417

Physical Location & Seq

Genomic Coordinates Reverse (-)

29695549 .. 29700741

Gene Structure 5193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1256500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCGCGGATTCTTCTCACGGGTATGGACTTGGACTTGATCGAAACAACAGCAAGTTAAGTATGGATAAAAAGAGAGAGTTTGTCTATGAAGTATCAAAGTGGTCAGACGGTGCCTCTGAAGTGTTACAGTCATGGAGCCGTCAGGACATTTTACAGATCCTATGTGCAGAAATGGGGAAAGAAAGGAAATATACTGGCTTGACAAAATTGAAAATAATAGAACACCTTCTGAAAGTTGTGTCTGAAAAGAAACAAGGGGGAAGTGAGGATGTAACAGACCTTAAACCACAGTCATCTAATGCCACTGGCCAAAAAACTACTAAAAGGCAAAGGAAAACTGAGAATCCATCTAGACTACATGTTCCGGAGAATAGTAATTATAACAATAGTAGTGGGAGTGACCTAGCCAATACTACATTCTGCAAAAACTCAGCTTGCAGAGCTACCGTAAATCGAGAAGATGCATTTTGCAAGAGATGTTCATGTTGCATTTGTCACAAGTTTGATGACAACAAGGACCCGAGCCTTTGGTTGGTTTGCAGCTCAGAGCTGCCATTTGAGGGTAATTCATGTGGCATGTCATGCCACCTTGAGTGTGCTTTAAAACGTGAAAGTTCTGGTATTGGAAAAGAGAAAGGACATAGAGGACTGGATGGGAGCTTTTACTGTATATCTTGTGGCAAAGTGAATGATCTGCTCGGATCCTGGCGAAAACAGCTAGTAATAGCAAAGGATACCAGGCGGGTAGACATACTGTGCTATCGTATTTCCTTGAGTCATAAGCTCCTCAAGGGGACTGCAAAGTATCAAAAACTTCATGAGATTGTGGATGAAGCTATGATGAAGCTTCAAGGTGAAGTGGGTCCGCTAACTGGCTTACCATTAAAGATGGGTCGGGGTATTGTTAACAGGCTTTCTTCTGGACCAGAGATTCAGAAACTTTGTGCATTTGCTGTGGAGTCACTGGATTTGGTGCTTCAGAAGGCAACATTTCCTCCATTGGCCAAGCCTAATGTACAAGGTGATCTATTTGTCAGTAACTGTCACACCCTATCCCTAATCACTGGATTTGCATGCATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006950 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031519 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032922 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0035064 GO:0036293 GO:0040029 GO:0042393 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051569 GO:0051570 GO:0051571 GO:0051574 GO:0051716 GO:0055044 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1900109 GO:1900111 GO:1902275 GO:1905269 GO:2000026 GO:2000028 GO:2000241 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

363

Amino Acids

40.11

Weight (kDa)

8.96

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	142 - 262	5.8e-38	PHD - plant homeodomain finger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30200 AT4G30200 AT4G30200 AT4G30200
fragaria_vesca	FvH4_4g08010 FvH4_4g08010
malus_domestica	MD13G1252500.v1.1 MD16G1256500.v1.1
prunus_persica	Prupe.1G084700_v2.0.a1
pyrus_communis	pycom13g22550 pycom16g21760
rosa_chinensis	RchiOBHm_Chr4g0401761
rosa_laevigata	RLG00000009127
rosa_multiflora	Rmu_co8300969.1_g000001 Rmu_sc0001405.1_g000016
rosa_roxburghii	Rroxscaffold_5G00346250
rosa_rugosa	Rorug04G0032100 Rorug04G0032200
rosa_samantha	Rh4AG109000 Rh4BG102800 Rh4CG117300 Rh4DG100500
rosa_wichuraiana	Rw4G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	4 cut(s)	6, 8, 745, 869
AclWI	GGATC	3 cut(s)	154, 699, 712
AcoI	YGGCCR	3 cut(s)	3, 310, 1005
AcuI	CTGAAG	2 cut(s)	141, 965
AfaI	GTAC	1 cut(s)	1020
AfiI	CCNNNNNNNGG	3 cut(s)	535, 563, 875
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	214, 854
AjnI	CCWGG	2 cut(s)	707, 740
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	9 cut(s)	437, 446, 546, 553, 663, 721, 787, 839, 850
AluI	AGCT	9 cut(s)	437, 446, 546, 553, 663, 721, 787, 839, 850
AlwI	GGATC	3 cut(s)	154, 699, 712
AlwNI	CAGNNNCTG	1 cut(s)	1044
Ama87I	CYCGRG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	3 cut(s)	3, 310, 1005
ApeKI	GCWGC	2 cut(s)	543, 553
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	3 cut(s)	520, 866, 926
AsuHPI	GGTGA	2 cut(s)	869, 1037
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	3 cut(s)	520, 866, 926
BalI	TGGCCA	2 cut(s)	312, 1007
BamHI	GGATCC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	540, 555
BccI	CCATC	3 cut(s)	358, 650, 886
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	709, 742
BciVI	GTATCC	1 cut(s)	730
BfaI	CTAG	3 cut(s)	354, 407, 722
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	3 cut(s)	6, 544, 554
BlsI	GCNGC	3 cut(s)	7, 545, 555
Bme1390I	CCNGG	2 cut(s)	709, 742
Bme18I	GGWCC	3 cut(s)	520, 866, 926
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	520, 866, 926
BmiI	GGNNCC	5 cut(s)	115, 140, 522, 706, 867
BmrFI	CCNGG	2 cut(s)	709, 742
BmsI	GCATC	1 cut(s)	454
BpuEI	CTTGAG	3 cut(s)	614, 776, 796
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	982, 1012
Bsc4I	CCNNNNNNNGG	3 cut(s)	535, 563, 875
Bse1I	ACTGG	6 cut(s)	202, 313, 657, 880, 972, 1072
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	709, 742
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	3 cut(s)	277, 661, 838
BseLI	CCNNNNNNNGG	3 cut(s)	535, 563, 875
BseMII	CTCAG	3 cut(s)	333, 447, 561
BseNI	ACTGG	6 cut(s)	202, 313, 657, 880, 972, 1072
BseRI	GAGGAG	1 cut(s)	779
BseXI	GCAGC	2 cut(s)	540, 555
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	5, 312, 1007
BshNI	GGYRCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	523
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	3 cut(s)	535, 563, 875
BsmFI	GGGAC	1 cut(s)	811
BsmI	GAATGC	1 cut(s)	1080
BsnI	GGCC	3 cut(s)	5, 312, 1007
BsoBI	CYCGRG	1 cut(s)	523
Bsp13I	TCCGGA	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	1018
Bsp143I	GATC	5 cut(s)	40, 159, 694, 704, 1027
BspACI	CCGC	4 cut(s)	6, 8, 745, 869
BspANI	GGCC	3 cut(s)	5, 312, 1007
BspCNI	CTCAG	3 cut(s)	334, 446, 560
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	5 cut(s)	115, 140, 522, 706, 867
BspPI	GGATC	3 cut(s)	154, 699, 712
BspT107I	GGYRCC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	1018
BsrI	ACTGG	6 cut(s)	202, 313, 657, 880, 972, 1072
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	5 cut(s)	40, 159, 694, 704, 1027
Bst2UI	CCWGG	2 cut(s)	709, 742
Bst4CI	ACNGT	7 cut(s)	113, 132, 294, 451, 671, 759, 1046
BstAPI	GCANNNNNTGC	1 cut(s)	585
BstAUI	TGTACA	1 cut(s)	1018
BstC8I	GCNNGC	2 cut(s)	439, 1078
BstDEI	CTNAG	3 cut(s)	342, 433, 547
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	277, 661, 838
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	5 cut(s)	43, 162, 697, 707, 1030
BstMBI	GATC	5 cut(s)	40, 159, 694, 704, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 585, 718
BstNI	CCWGG	2 cut(s)	709, 742
BstNSI	RCATGY	3 cut(s)	365, 583, 1080
BstSCI	CCNGG	2 cut(s)	707, 740
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	540, 555
BstX2I	RGATCY	2 cut(s)	159, 704
BstYI	RGATCY	2 cut(s)	159, 704
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	5, 312, 1007
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	277, 661, 838
BtsIMutI	CAGTG	3 cut(s)	306, 965, 1065
Cac8I	GCNNGC	2 cut(s)	439, 1078
CaiI	CAGNNNCTG	1 cut(s)	1044
CciI	TCATGA	1 cut(s)	820
Cfr13I	GGNCC	3 cut(s)	520, 866, 926
Cfr42I	CCGCGG	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	1019
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	8 cut(s)	135, 362, 486, 573, 580, 585, 821, 1077
CviQI	GTAC	1 cut(s)	1019
DdeI	CTNAG	3 cut(s)	342, 433, 547
DpnI	GATC	5 cut(s)	42, 161, 696, 706, 1029
DpnII	GATC	5 cut(s)	40, 159, 694, 704, 1027
DraI	TTTAAA	1 cut(s)	606
EaeI	YGGCCR	3 cut(s)	3, 310, 1005
Eco47I	GGWCC	3 cut(s)	520, 866, 926
Eco57I	CTGAAG	2 cut(s)	141, 965
Eco88I	CYCGRG	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	2 cut(s)	707, 740
EcoT22I	ATGCAT	2 cut(s)	469, 1082
FaeI	CATG	8 cut(s)	138, 365, 489, 576, 583, 588, 824, 1080
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	8 cut(s)	134, 361, 485, 572, 579, 584, 820, 1076
FauI	CCCGC	1 cut(s)	738
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	3 cut(s)	6, 544, 554
FokI	GGATG	3 cut(s)	284, 668, 845
Fsp4HI	GCNGC	3 cut(s)	6, 544, 554
FspBI	CTAG	3 cut(s)	354, 407, 722
GluI	GCNGC	3 cut(s)	6, 544, 554
HaeIII	GGCC	3 cut(s)	5, 312, 1007
HapII	CCGG	1 cut(s)	368
Hin1II	CATG	8 cut(s)	138, 365, 489, 576, 583, 588, 824, 1080
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	5 cut(s)	11, 346, 778, 934, 962
HpaI	GTTAAC	1 cut(s)	910
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	869, 1037
Hpy166II	GTNNAC	2 cut(s)	751, 910
Hpy188I	TCNGA	8 cut(s)	109, 121, 234, 247, 550, 704, 939, 984
Hpy188III	TCNNGA	6 cut(s)	146, 354, 368, 458, 821, 924
Hpy8I	GTNNAC	2 cut(s)	751, 910
HpyAV	CCTTC	2 cut(s)	239, 979
HpyCH4III	ACNGT	7 cut(s)	113, 132, 294, 451, 671, 759, 1046
HpyCH4IV	ACGT	1 cut(s)	610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 585, 718
HpyF3I	CTNAG	3 cut(s)	342, 433, 547
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	8 cut(s)	138, 365, 489, 576, 583, 588, 824, 1080
Kpn2I	TCCGGA	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	910
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	40, 159, 694, 704, 1027
LmnI	GCTCC	3 cut(s)	138, 660, 792
Lsp1109I	GCAGC	2 cut(s)	540, 555
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	3 cut(s)	354, 407, 722
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	7 cut(s)	126, 274, 401, 497, 963, 1040, 1046
MalI	GATC	5 cut(s)	42, 161, 696, 706, 1029
MboI	GATC	5 cut(s)	40, 159, 694, 704, 1027
MboII	GAAGA	3 cut(s)	6, 473, 912
MflI	RGATCY	2 cut(s)	159, 704
MlsI	TGGCCA	2 cut(s)	312, 1007
MluCI	AATT	3 cut(s)	209, 379, 568
MluNI	TGGCCA	2 cut(s)	312, 1007
MlyI	GAGTC	2 cut(s)	787, 971
MnlI	CCTC	6 cut(s)	127, 262, 556, 641, 800, 1008
Mox20I	TGGCCA	2 cut(s)	312, 1007
Mph1103I	ATGCAT	2 cut(s)	469, 1082
MroI	TCCGGA	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	228
MscI	TGGCCA	2 cut(s)	312, 1007
MseI	TTAA	5 cut(s)	59, 285, 605, 887, 909
MslI	CAYNNNNRTG	1 cut(s)	24
Msp20I	TGGCCA	2 cut(s)	312, 1007
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	709, 742
Mva1269I	GAATGC	1 cut(s)	1080
MvaI	CCWGG	2 cut(s)	709, 742
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	443, 585, 718
NdeII	GATC	5 cut(s)	40, 159, 694, 704, 1027
NlaIII	CATG	8 cut(s)	138, 365, 489, 576, 583, 588, 824, 1080
NlaIV	GGNNCC	5 cut(s)	115, 140, 522, 706, 867
NmuCI	GTSAC	4 cut(s)	401, 497, 963, 1046
NsiI	ATGCAT	2 cut(s)	469, 1082
NspI	RCATGY	3 cut(s)	365, 583, 1080
PaeI	GCATGC	1 cut(s)	1080
PagI	TCATGA	1 cut(s)	820
PciI	ACATGT	1 cut(s)	361
PctI	GAATGC	1 cut(s)	1080
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	11, 346, 934
PkrI	GCNGC	3 cut(s)	7, 545, 555
PleI	GAGTC	2 cut(s)	786, 970
PpsI	GAGTC	2 cut(s)	786, 970
PpuMI	RGGWCCY	1 cut(s)	520
PscI	ACATGT	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	2 cut(s)	707, 740
PspGI	CCWGG	2 cut(s)	707, 740
PspN4I	GGNNCC	5 cut(s)	115, 140, 522, 706, 867
PspPI	GGNCC	3 cut(s)	520, 866, 926
PspPPI	RGGWCCY	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	1044
PsuI	RGATCY	2 cut(s)	159, 704
RsaI	GTAC	1 cut(s)	1020
RsaNI	GTAC	1 cut(s)	1019
RseI	CAYNNNNRTG	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	5 cut(s)	59, 285, 605, 887, 909
SatI	GCNGC	3 cut(s)	6, 544, 554
Sau3AI	GATC	5 cut(s)	40, 159, 694, 704, 1027
Sau96I	GGNCC	3 cut(s)	520, 866, 926
SchI	GAGTC	2 cut(s)	787, 971
ScrFI	CCNGG	2 cut(s)	709, 742
SfaNI	GCATC	1 cut(s)	454
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	3 cut(s)	520, 866, 926
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	3 cut(s)	593, 775, 791
SmoI	CTYRAG	3 cut(s)	593, 775, 791
SphI	GCATGC	1 cut(s)	1080
Sse9I	AATT	3 cut(s)	209, 379, 568
SsiI	CCGC	4 cut(s)	6, 8, 745, 869
SspMI	CTAG	3 cut(s)	354, 407, 722
StyD4I	CCNGG	2 cut(s)	707, 740
TaaI	ACNGT	7 cut(s)	113, 132, 294, 451, 671, 759, 1046
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	3 cut(s)	43, 457, 1084
TasI	AATT	3 cut(s)	209, 379, 568
TatI	WGTACW	1 cut(s)	1018
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	11, 346, 934
Tru1I	TTAA	5 cut(s)	59, 285, 605, 887, 909
Tru9I	TTAA	5 cut(s)	59, 285, 605, 887, 909
TscAI	CASTG	3 cut(s)	313, 972, 1072
TseFI	GTSAC	4 cut(s)	401, 497, 963, 1046
TseI	GCWGC	2 cut(s)	543, 553
Tsp45I	GTSAC	4 cut(s)	401, 497, 963, 1046
TspDTI	ATGAA	6 cut(s)	105, 474, 561, 809, 849, 860
TspRI	CASTG	3 cut(s)	313, 972, 1072
VpaK11BI	GGWCC	3 cut(s)	520, 866, 926
XbaI	TCTAGA	1 cut(s)	353
XceI	RCATGY	3 cut(s)	365, 583, 1080
XmiI	GTMKAC	1 cut(s)	750
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	3 cut(s)	354, 407, 722
Zsp2I	ATGCAT	2 cut(s)	469, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.