Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008417

Physical Location & Seq

Genomic Coordinates Reverse (-)

16984814 .. 16991048

Gene Structure 6235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGGCCTCGGATTCTTCTACTCAAGGACTTGCACAGGATCTGTCAAATTGCAGTAACTTAAGTATAGACAAAAAGAGAAAACTTGTCTATGAAATATCAAAATGGTCACAGGGTGCTTCTGAAGTGCTACAGGCATGGAGTCGTCAGGAGATTTTACAAATTCTATGTGTAGAGATGGGGAAAGAAAGGAAATATACTGGCTTGACAAAAGTGAAAATAATAGAGCACCTTCTGAAAGTTGTGTCTGAAAACAAATCAGGAGGAGGTGATGTTGTAGCTGACGTTAAACCACAGTCATCCTCTGCATCTGGCCAAAGAATTACCAAAAGGCAGAGGAAAACTGAGAATCCATCTCGACTATCTGTTCCAGAAAACAATTCTCCCATCAATAGTAGTGGTTGCGAATTAGCGAATACTATATTCTGCAAAAACTCAGCTTGCAGAGCTTCCTTAAATCGAGAAGATGCATTTTGCAAGAGGTGTTCGTGTTGCATATGTTATCAGTATGATGATAACAAGGATCCTAGCCTATGGTTGGTTTGCAGCTCGGATCCTCCATTCCAGGGTAAATCATGTGGCATGTCGTGCCACCTTGATTGTGCTTTTAAACATGAAAGTTCTGGTATTGGAAAAGAGGGACAACGCATGGGACTTGATGGGAGCTTTTATTGTGTGTCTTGTGGTAAAGTGAATGATTTGCTCGGATCCTGGCGAAAACAACTAGTGATAGCAAAGGATACCAGACGGGTGGACATACTGTGCTATCGTGTGTCCTTGAGTCATAAGTTTCTCAAAGGAACTGTGAAGTATCAAAAGCTTCACGAGATTGTAGATGAAGCTGTGAAGAAGCTTGAAGCTGAAGTGGGTCTGTTAACTGGCTTACCCAATAAGATGGGTCGTGGTATTGTTAATAGGCTTTCTTCTGGACCAGAGGTTCAGAGACTTTGTGCATTTGCTGTGGACTCCTTTGATTCATTAGTTTCCAATGCAACGTTCCATCCATTGCCCAAGCCTGAAATACAAGATTTAGATTTGATTGATCCAGATATGATCAGATTTGAGGACATCCACGCTACATCCCTCAACGTGATTTTGGGTTCTGTAGATCCTATCCCCAAAAGCTTGGTTGGTTACAGGTTATGGCATCGTAAGGCTCAAGATATGAGTTATCCAGCAGAGCCAACATGCACATTGTTACCACCAAAGACAAAGTTTATTGTCACAGGACTAATTCCAGCTACAGAATACTGCTTTAAAGTCACTTCATTTGATGGTTCAAGACATCTGGGCATGTGTGAAGTTCGGATCTCCACAAGTACTGCTGGGGATGAAGTTCCAAATTGTTCAGTCACAGAGCGAAGTCAAAGCCCAGCTACCAACTATAGTGGCCTTTCTAATCCATCTTCAGTGGAAGATGAAACTAATAACATTACTCCCTATAATGATCAAGCTGATAACCGAGCAGACACTTACCGTAATCAATGCGAGGACACTGAAAAGTCTACTTCTGCTAATTTGTCAAATGGTGCTATCACCTGCAATAGCATTGGCAGAGGACGTACAGAAGCCAATACAGTTTCTTTGCTGGATGAGGAACATGCGGCCTCCATATCCAATTTCGACGTCCTAAAACCTGAGTGCAAGCAATCACCCGAATGTCAAATTATTGAAGACATCAGTACTGATAATGGGTCCAATTCCCCTGTTCGAACTGGAATGGAATGTGTGCCCTTTGTTAATAGCTCAGAAGCTTGCTTGCCCATCACTCCATGCAAATTGGAAACACTTAAAGATGGGTTCGGAAGGAACGAAAGATCCAATTCCAGCTGCAAGGATTTGAAAAATGGGGCTGGCAAAGGGGAGGAACCCCAAGATGGCAGTACGTCAAAGAAGAGAAGTGGGGAAAGGCAAGACGAGAAGTGTGTGGCAAATGGTGTTTCGGATAGGGATTTCGAGTATTATGTGAAGGTTATCAGATGGTTAGAATGCGAGGGACATATCGAGCAGAACTTTAGACAAAAATTTCTGACGTGGTATAGCTTGAGAGCAACCCCACAGGAGGTAAGGATTGTGAAGGTGTTTGTGGATACCTTTATTGAAGATCCAGCATCTCTTGCGGGGCAACTTATAGACACCTTTGCAGAAAGCATTTCAAGCAAGAAGTCATCTGTTGTGCCAAGTGGGTTCTGCATGAAACTTTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006950 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031519 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032922 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0035064 GO:0036293 GO:0040029 GO:0042393 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051569 GO:0051570 GO:0051571 GO:0051574 GO:0051716 GO:0055044 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1900109 GO:1900111 GO:1902275 GO:1905269 GO:2000026 GO:2000028 GO:2000241 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

735

Amino Acids

81.19

Weight (kDa)

6.25

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_Oberon	PF07227	142 - 262	3.7e-37	PHD - plant homeodomain finger protein
Fn3_VIN3	PF23376	351 - 438	2.7e-36	VIN3-like, fibronectin type-III domain
VIN3_C	PF23380	648 - 721	3e-39	VIN3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30200 AT4G30200 AT4G30200 AT4G30200
fragaria_vesca	FvH4_4g08010 FvH4_4g08010
malus_domestica	MD13G1252500.v1.1 MD16G1256500.v1.1
prunus_persica	Prupe.1G084700_v2.0.a1
pyrus_communis	pycom13g22550 pycom16g21760
rosa_chinensis	RchiOBHm_Chr4g0401761
rosa_laevigata	RLG00000009127
rosa_multiflora	Rmu_co8300969.1_g000001 Rmu_sc0001405.1_g000016
rosa_roxburghii	Rroxscaffold_5G00346250
rosa_rugosa	Rorug04G0032100 Rorug04G0032200
rosa_samantha	Rh4AG109000 Rh4BG102800 Rh4CG117300 Rh4DG100500
rosa_wichuraiana	Rw4G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1544
AatII	GACGTC	1 cut(s)	1626
Acc36I	ACCTGC	1 cut(s)	1544
AccI	GTMKAC	1 cut(s)	1502
AciI	CCGC	2 cut(s)	1601, 2117
AclI	AACGTT	1 cut(s)	992
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	159, 2021
AcuI	CTGAAG	3 cut(s)	141, 879, 1389
AcyI	GRCGYC	1 cut(s)	1623
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	4 cut(s)	1318, 1561, 1681, 1882
AfiI	CCNNNNNNNGG	4 cut(s)	535, 563, 1874, 2059
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	6 cut(s)	854, 1278, 1670, 1840, 2099, 2154
AhlI	ACTAGT	1 cut(s)	721
AjiI	CACGTC	1 cut(s)	2031
AjnI	CCWGG	2 cut(s)	561, 707
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AloI	GAACNNNNNNTCC	4 cut(s)	918, 950, 1799, 1831
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	934
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	4 cut(s)	3, 310, 1387, 1602
ApeKI	GCWGC	2 cut(s)	543, 1827
ApoI	RAATTY	2 cut(s)	159, 2021
AspS9I	GGNCC	2 cut(s)	926, 1692
AsuHPI	GGTGA	3 cut(s)	278, 1525, 1641
AsuII	TTCGAA	1 cut(s)	1708
AvaII	GGWCC	2 cut(s)	926, 1692
BaeGI	GKGCMC	1 cut(s)	1731
BalI	TGGCCA	1 cut(s)	312
BamHI	GGATCC	3 cut(s)	520, 550, 704
BauI	CACGAG	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	1677
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	555, 1814
BciT130I	CCWGG	2 cut(s)	563, 709
BciVI	GTATCC	2 cut(s)	730, 2080
BclI	TGATCA	2 cut(s)	1050, 1444
BcoDI	GTCTC	1 cut(s)	934
BcuI	ACTAGT	1 cut(s)	721
BfaI	CTAG	2 cut(s)	525, 722
BfmI	CTRYAG	4 cut(s)	128, 1101, 1239, 1381
BfrI	CTTAAG	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	1544
BfuI	GTATCC	2 cut(s)	730, 2080
BisI	GCNGC	3 cut(s)	544, 1602, 1828
BlsI	GCNGC	3 cut(s)	545, 1603, 1829
BmcAI	AGTACT	2 cut(s)	1318, 1681
Bme1390I	CCNGG	2 cut(s)	563, 709
Bme18I	GGWCC	2 cut(s)	926, 1692
BmgBI	CACGTC	1 cut(s)	2031
BmgT120I	GGNCC	2 cut(s)	926, 1692
BmiI	GGNNCC	5 cut(s)	522, 552, 706, 1693, 1866
BmrFI	CCNGG	2 cut(s)	563, 709
BmsI	GCATC	4 cut(s)	314, 454, 1153, 2117
BpiI	GAAGAC	1 cut(s)	1677
Bpu14I	TTCGAA	1 cut(s)	1708
BpuEI	CTTGAG	4 cut(s)	6, 796, 1140, 2062
BsaHI	GRCGYC	1 cut(s)	1623
BsaJI	CCNNGG	2 cut(s)	6, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	4 cut(s)	535, 563, 1874, 2059
Bse1I	ACTGG	3 cut(s)	202, 880, 1717
Bse3DI	GCAATG	1 cut(s)	1001
BseBI	CCWGG	2 cut(s)	563, 709
BseDI	CCNNGG	2 cut(s)	6, 562
BseGI	GGATG	6 cut(s)	296, 997, 1065, 1076, 1333, 1594
BseLI	CCNNNNNNNGG	4 cut(s)	535, 563, 1874, 2059
BseMI	GCAATG	1 cut(s)	1001
BseMII	CTCAG	4 cut(s)	333, 447, 1626, 1758
BseNI	ACTGG	3 cut(s)	202, 880, 1717
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	1731
BseXI	GCAGC	2 cut(s)	555, 1814
BseYI	CCCAGC	2 cut(s)	1322, 1369
BshFI	GGCC	4 cut(s)	5, 312, 1389, 1604
BsiHKAI	GWGCWC	1 cut(s)	228
BslFI	GGGAC	3 cut(s)	651, 663, 2007
BslI	CCNNNNNNNGG	4 cut(s)	535, 563, 1874, 2059
BsmAI	GTCTC	1 cut(s)	934
BsmFI	GGGAC	3 cut(s)	651, 663, 2007
BsmI	GAATGC	1 cut(s)	1991
BsnI	GGCC	4 cut(s)	5, 312, 1389, 1604
Bsp119I	TTCGAA	1 cut(s)	1708
Bsp1286I	GDGCHC	2 cut(s)	228, 1731
BspACI	CCGC	2 cut(s)	1601, 2117
BspANI	GGCC	4 cut(s)	5, 312, 1389, 1604
BspCNI	CTCAG	4 cut(s)	334, 446, 1627, 1757
BspLI	GGNNCC	5 cut(s)	522, 552, 706, 1693, 1866
BspMI	ACCTGC	1 cut(s)	1544
BspT104I	TTCGAA	1 cut(s)	1708
BspTI	CTTAAG	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	1001
BsrI	ACTGG	3 cut(s)	202, 880, 1717
BssECI	CCNNGG	2 cut(s)	6, 562
BssNI	GRCGYC	1 cut(s)	1623
BssSI	CACGAG	1 cut(s)	821
Bst2BI	CACGAG	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	563, 709
Bst4CI	ACNGT	5 cut(s)	294, 759, 802, 1475, 1576
Bst6I	CTCTTC	1 cut(s)	1886
BstACI	GRCGYC	1 cut(s)	1623
BstAFI	CTTAAG	1 cut(s)	58
BstAPI	GCANNNNNTGC	2 cut(s)	585, 2114
BstBI	TTCGAA	1 cut(s)	1708
BstC8I	GCNNGC	5 cut(s)	439, 1643, 1753, 1757, 1852
BstDEI	CTNAG	4 cut(s)	342, 433, 1635, 1744
BstF5I	GGATG	6 cut(s)	296, 997, 1065, 1076, 1333, 1594
BstMAI	GTCTC	1 cut(s)	934
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 585, 2114, 2154
BstNI	CCWGG	2 cut(s)	563, 709
BstNSI	RCATGY	4 cut(s)	583, 1188, 1294, 1601
BstSCI	CCNGG	2 cut(s)	561, 707
BstSFI	CTRYAG	4 cut(s)	128, 1101, 1239, 1381
BstSLI	GKGCMC	1 cut(s)	1731
BstV1I	GCAGC	2 cut(s)	555, 1814
BstV2I	GAAGAC	1 cut(s)	1677
BstX2I	RGATCY	8 cut(s)	37, 520, 550, 704, 1105, 1305, 1814, 2101
BstXI	CCANNNNNNTGG	3 cut(s)	748, 892, 1123
BstYI	RGATCY	8 cut(s)	37, 520, 550, 704, 1105, 1305, 1814, 2101
BsuI	GTATCC	2 cut(s)	730, 2080
BsuRI	GGCC	4 cut(s)	5, 312, 1389, 1604
BtrI	CACGTC	1 cut(s)	2031
BtsCI	GGATG	6 cut(s)	296, 997, 1065, 1076, 1333, 1594
BtsIMutI	CAGTG	2 cut(s)	1413, 1491
BveI	ACCTGC	1 cut(s)	1544
Cac8I	GCNNGC	5 cut(s)	439, 1643, 1753, 1757, 1852
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	926, 1692
Csp6I	GTAC	4 cut(s)	1317, 1560, 1680, 1881
CspCI	CAANNNNNGTGG	6 cut(s)	376, 411, 578, 613, 1366, 1401
CviQI	GTAC	4 cut(s)	1317, 1560, 1680, 1881
DdeI	CTNAG	4 cut(s)	342, 433, 1635, 1744
DraI	TTTAAA	2 cut(s)	607, 1255
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	1886
EarI	CTCTTC	1 cut(s)	1886
Eco47I	GGWCC	2 cut(s)	926, 1692
Eco57I	CTGAAG	3 cut(s)	141, 879, 1389
EcoRII	CCWGG	2 cut(s)	561, 707
EcoT22I	ATGCAT	1 cut(s)	469
FaqI	GGGAC	3 cut(s)	651, 663, 2007
FauI	CCCGC	1 cut(s)	2110
FauNDI	CATATG	1 cut(s)	494
FbaI	TGATCA	2 cut(s)	1050, 1444
FblI	GTMKAC	1 cut(s)	1502
Fnu4HI	GCNGC	3 cut(s)	544, 1602, 1828
FokI	GGATG	6 cut(s)	283, 984, 1052, 1063, 1340, 1601
Fsp4HI	GCNGC	3 cut(s)	544, 1602, 1828
FspBI	CTAG	2 cut(s)	525, 722
GluI	GCNGC	3 cut(s)	544, 1602, 1828
GsaI	CCCAGC	2 cut(s)	1326, 1373
HaeIII	GGCC	4 cut(s)	5, 312, 1389, 1604
Hin1I	GRCGYC	1 cut(s)	1623
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HindIII	AAGCTT	4 cut(s)	815, 848, 1120, 1749
HinfI	GANTC	6 cut(s)	11, 139, 346, 778, 962, 971
HpaI	GTTAAC	1 cut(s)	873
HphI	GGTGA	3 cut(s)	278, 1525, 1641
Hpy166II	GTNNAC	4 cut(s)	751, 873, 961, 1503
Hpy8I	GTNNAC	4 cut(s)	751, 873, 961, 1503
Hpy99I	CGWCG	1 cut(s)	1625
HpyAV	CCTTC	4 cut(s)	239, 1797, 1960, 2068
HpyCH4III	ACNGT	5 cut(s)	294, 759, 802, 1475, 1576
HpyCH4IV	ACGT	7 cut(s)	282, 992, 1086, 1558, 1623, 1883, 2030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 585, 2114, 2154
HpyF3I	CTNAG	4 cut(s)	342, 433, 1635, 1744
HpySE526I	ACGT	7 cut(s)	282, 992, 1086, 1558, 1623, 1883, 2030
Hsp92I	GRCGYC	1 cut(s)	1623
Ksp22I	TGATCA	2 cut(s)	1050, 1444
KspAI	GTTAAC	1 cut(s)	873
LmnI	GCTCC	1 cut(s)	660
Lsp1109I	GCAGC	2 cut(s)	555, 1814
LweI	GCATC	4 cut(s)	314, 454, 1153, 2117
MaeI	CTAG	2 cut(s)	525, 722
MaeII	ACGT	7 cut(s)	282, 992, 1086, 1558, 1623, 1883, 2030
MaeIII	GTNAC	7 cut(s)	53, 105, 1130, 1194, 1219, 1258, 1348
MboII	GAAGA	9 cut(s)	6, 473, 856, 912, 1395, 1424, 1682, 1903, 2111
MflI	RGATCY	8 cut(s)	37, 520, 550, 704, 1105, 1305, 1814, 2101
MhlI	GDGCHC	2 cut(s)	228, 1731
MlsI	TGGCCA	1 cut(s)	312
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	3 cut(s)	148, 787, 956
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	9 cut(s)	59, 285, 452, 606, 872, 909, 1254, 1737, 1788
MslI	CAYNNNNRTG	1 cut(s)	1654
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	1827
MspCI	CTTAAG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	563, 709
Mva1269I	GAATGC	1 cut(s)	1991
MvaI	CCWGG	2 cut(s)	563, 709
MwoI	GCNNNNNNNGC	4 cut(s)	443, 585, 2114, 2154
NdeI	CATATG	1 cut(s)	494
NlaIV	GGNNCC	5 cut(s)	522, 552, 706, 1693, 1866
NmuCI	GTSAC	4 cut(s)	105, 1219, 1258, 1348
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	4 cut(s)	583, 1188, 1294, 1601
NspV	TTCGAA	1 cut(s)	1708
PaqCI	CACCTGC	1 cut(s)	1544
PcsI	WCGNNNNNNNCGW	1 cut(s)	1806
PctI	GAATGC	1 cut(s)	1991
PfeI	GAWTC	3 cut(s)	11, 346, 971
PkrI	GCNGC	3 cut(s)	545, 1603, 1829
PleI	GAGTC	3 cut(s)	147, 786, 956
PpsI	GAGTC	3 cut(s)	147, 786, 956
Psp1406I	AACGTT	1 cut(s)	992
Psp6I	CCWGG	2 cut(s)	561, 707
PspFI	CCCAGC	2 cut(s)	1322, 1369
PspGI	CCWGG	2 cut(s)	561, 707
PspN4I	GGNNCC	5 cut(s)	522, 552, 706, 1693, 1866
PspPI	GGNCC	2 cut(s)	926, 1692
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	8 cut(s)	37, 520, 550, 704, 1105, 1305, 1814, 2101
PvuII	CAGCTG	1 cut(s)	1827
RsaI	GTAC	4 cut(s)	1318, 1561, 1681, 1882
RsaNI	GTAC	4 cut(s)	1317, 1560, 1680, 1881
RseI	CAYNNNNRTG	1 cut(s)	1654
SaqAI	TTAA	9 cut(s)	59, 285, 452, 606, 872, 909, 1254, 1737, 1788
SatI	GCNGC	3 cut(s)	544, 1602, 1828
Sau96I	GGNCC	2 cut(s)	926, 1692
ScaI	AGTACT	2 cut(s)	1318, 1681
SchI	GAGTC	3 cut(s)	148, 787, 956
ScrFI	CCNGG	2 cut(s)	563, 709
SduI	GDGCHC	2 cut(s)	228, 1731
SfaNI	GCATC	4 cut(s)	314, 454, 1153, 2117
SfcI	CTRYAG	4 cut(s)	128, 1101, 1239, 1381
SfuI	TTCGAA	1 cut(s)	1708
SinI	GGWCC	2 cut(s)	926, 1692
SmiMI	CAYNNNNRTG	1 cut(s)	1654
SmlI	CTYRAG	5 cut(s)	21, 58, 775, 1155, 2041
SmoI	CTYRAG	5 cut(s)	21, 58, 775, 1155, 2041
SpeI	ACTAGT	1 cut(s)	721
SsiI	CCGC	2 cut(s)	1601, 2117
SspMI	CTAG	2 cut(s)	525, 722
StyD4I	CCNGG	2 cut(s)	561, 707
TaaI	ACNGT	5 cut(s)	294, 759, 802, 1475, 1576
TaiI	ACGT	7 cut(s)	285, 995, 1089, 1561, 1626, 1886, 2033
TaqI	TCGA	6 cut(s)	355, 457, 1620, 1708, 1953, 2001
TatI	WGTACW	2 cut(s)	1316, 1679
TauI	GCSGC	1 cut(s)	1604
TfiI	GAWTC	3 cut(s)	11, 346, 971
Tru1I	TTAA	9 cut(s)	59, 285, 452, 606, 872, 909, 1254, 1737, 1788
Tru9I	TTAA	9 cut(s)	59, 285, 452, 606, 872, 909, 1254, 1737, 1788
TscAI	CASTG	2 cut(s)	1413, 1498
TseFI	GTSAC	4 cut(s)	105, 1219, 1258, 1348
TseI	GCWGC	2 cut(s)	543, 1827
Tsp45I	GTSAC	4 cut(s)	105, 1219, 1258, 1348
TspDTI	ATGAA	8 cut(s)	105, 627, 849, 963, 1254, 1344, 1431, 2207
TspRI	CASTG	2 cut(s)	1413, 1498
Vha464I	CTTAAG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	926, 1692
XapI	RAATTY	2 cut(s)	159, 2021
XceI	RCATGY	4 cut(s)	583, 1188, 1294, 1601
XmiI	GTMKAC	1 cut(s)	1502
XspI	CTAG	2 cut(s)	525, 722
ZraI	GACGTC	1 cut(s)	1624
ZrmI	AGTACT	2 cut(s)	1318, 1681
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.