Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008417

Physical Location & Seq

Genomic Coordinates Reverse (-)

4693018 .. 4693236

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAATTTGTTTTGTGAGAAAAACATAATAACTACTAATTGGCGGAGTGCTGAATTAGACACGTATCAATTCTTCAACAAGCTTTATAAGGACACCTCGCTTAAGGAGTTCTTGTATGATGGACTGTGCTACCAAGTAAATGAACATTACCAAGTTGCACAGGACAAAAAGCTTCAAAGAATGAGGCGTGAGCTACGAACTACTGCAGTTGAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006950 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031519 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032922 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0035064 GO:0036293 GO:0040029 GO:0042393 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051569 GO:0051570 GO:0051571 GO:0051574 GO:0051716 GO:0055044 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1900109 GO:1900111 GO:1902275 GO:1905269 GO:2000026 GO:2000028 GO:2000241 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

72

Amino Acids

8.76

Weight (kDa)

7.75

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	3 - 68	5.2e-06	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0008417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30200 AT4G30200 AT4G30200 AT4G30200
fragaria_vesca	FvH4_4g08010 FvH4_4g08010
malus_domestica	MD13G1252500.v1.1 MD16G1256500.v1.1
prunus_persica	Prupe.1G084700_v2.0.a1
pyrus_communis	pycom13g22550 pycom16g21760
rosa_chinensis	RchiOBHm_Chr4g0401761
rosa_laevigata	RLG00000009127
rosa_multiflora	Rmu_co8300969.1_g000001 Rmu_sc0001405.1_g000016
rosa_roxburghii	Rroxscaffold_5G00346250
rosa_rugosa	Rorug04G0032100 Rorug04G0032200
rosa_samantha	Rh4AG109000 Rh4BG102800 Rh4CG117300 Rh4DG100500
rosa_wichuraiana	Rw4G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AciI	CCGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	4
AflII	CTTAAG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	76, 176, 212
AluBI	AGCT	3 cut(s)	82, 172, 193
AluI	AGCT	3 cut(s)	82, 172, 193
ApoI	RAATTY	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BccI	CCATC	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
BspACI	CCGC	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	208
BspTI	CTTAAG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	204
CviJI	RGCY	3 cut(s)	82, 172, 193
CviKI_1	RGCY	3 cut(s)	82, 172, 193
EciI	GGCGGA	1 cut(s)	58
FaiI	YATR	3 cut(s)	26, 87, 117
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
HindIII	AAGCTT	2 cut(s)	80, 170
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	158, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	62
LpnPI	CCDG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	62
MboII	GAAGA	1 cut(s)	64
MluCI	AATT	4 cut(s)	4, 37, 53, 68
MnlI	CCTC	2 cut(s)	106, 177
MseI	TTAA	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	63
PsiI	TTATAA	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	102
SetI	ASST	5 cut(s)	65, 84, 98, 174, 195
SfcI	CTRYAG	1 cut(s)	204
SgeI	CNNG	8 cut(s)	73, 91, 109, 124, 146, 164, 173, 200
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	4, 37, 53, 68
SsiI	CCGC	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	1 cut(s)	65
TasI	AATT	4 cut(s)	4, 37, 53, 68
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	17, 156
Vha464I	CTTAAG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.