Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008417

Physical Location & Seq

Genomic Coordinates Forward (+)

20163151 .. 20168750

Gene Structure 5600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGTGGAGGCTCAACTGCTTCTTCAATAGCTATGGCCACGGATTCTTCTCACGTTTCGGCATTTCAGAAGATCTATGTTTTTTCTTTCATCTGTTCAACTATTCTACTTTCTATAAACTGATATACGTCCCTTTCTCCTTGGCTTTAGGACTTGCACTTGATCATTCGAACAGCAGCAAGTTAAGTATGGATAAAAGGAGAGAGCTTGTCTATGAAGTATCAAAGTGGCCACGTGGTGCCTCTGAAGTGTTACAGTCATGGAGCCGTCAGGAGATTTTACAGATCCTATGTGCAGAAATGGGAAAAGAAAGGAAATATACTGGCTTGACAAAAGTGAAAATAATAGAGCACCTTCTGAAAGTTGTGTCTGAAAAGAAAGCAGGGGGAGGTGAGGATGCAACAGACCTTAAACCACAGTCATCTAATGCCACTGGCCAAAGAACTACTAAAAGGCAGAGGAAAACGGAGAATCCATCTCGGCTACATGTTCCGGAGAATCGTATTTCTAAAAACAGTAGTGGGAGTGACCTAGCCAATAATAATACATTTTGCAAAAACTCAGCTTGCAGAGCTACCTTAAATCCGGAAGACGCATTTTGCAAAAGATGTTCGTGTTGCATCTGTTACAAGTTTGATGACAACAAGGACCCGAGCCTTTGGTTAGTTTGCAGCTCTGAGCCGCCGTTCGAGGGTAATTCATGTGGCATGTCATGCCACCTTGAGTGTGCTTTAAAGCGTGAAAGTTCTGGTATCGGAAAAGACAGAGGACGTAGGGGACTTGATGGGAGCTTTTGTTGTATATCTTGTGGCAAAGTGAATGATCTGCTCAGATCCTGGCGGAAACAGCTAGTAATAGCAAAGGATACCAGACGGGTAGACATACTGTGCTATCGTATTTCCTTGAGTCATAAGCTTCTCAAGGGGACTGCAAAGTATCAAAAGCTTCATGAGATTGTGGATGAGGCTATGAAGAAGCTTCAAGATGAAGTGGGTCCGCTAACTGGCTTACCATTAAAGATGGGTCGGGGTATTGTTAACAGGCTTTCTTCTGGACCAGAGATTCAGAAACTTTGTGCATTTGCTGTGGAGTCAATGGATTCGGTGCTTCAGAAAGCAACATTGCCTCCATTGGCCAAGCCTAATGTACAAGATCCAAGTTTTATTGCTCCAGACATGGTTAGATTTGAGGATGTCCATGCTACATCGCTCACTGTGGTTTTGAGTTCTGAATATCCTCCCTCAGAAATTTTAGTTGGTTACAAATTATGGCACCGGAAGGCTGATGATATGAATTATCCAACAGAACCAACTGCTACACTGTTGTTTGCACCAAAGACGAGATTTGTTGTCACCGGACTAACTCCAGCTACAGAGTACTGTTTCAAAGTGACTTCGTTCAATGATTCAAGACATTTGGGCATGTGTGAAGTATGGTCCTCCACAAGTACTGCTGGAGATGAAGTCCCTAATTGTTCAGTAACACAGAGAAGTCAAAGCCCAGTTACAAACTATAGTAGCCTTTCTAATCCTTCTTCAGTGGAAGATGAAACTAATAATATTACCGCTTATGGTGATCAAGCTGATAACCGAGCAGACAATTATATTACTTTCTGCAAGGACACTGATAATACCGTCTTTGCTGATTTATCAGATGATGTTGTCAATGCCAACAGCATGGATGGAGGACCTGCAGCAGATGTTATTTCGATGCTGGATGAGGAACACACCAATGGGATGGTTGGCTCCATATCTAAATCCGATGTCATTGAACTCGAGCGCAAGCAATCACCAGATTGCCAAATCGTTGAAGACATAAGCACTGATAACGGGTCAAATTCCCCTGCTCGAACTGGAATGGAATGTGTCCCATTTGTTGGTAGCTCAGAGGCTGGCTTACCCATCACTCCTTGCAAAATCGACATACTTAAAGATGGGCTAGGAAGGAATGTAAGATCAAATTCCAGTAGCAAGGATTTAAAAAATGGTACTGGGAAAGGAGAGGAACCCCAAGATGGAAGCACATCAAAAAAGAGAAGTGCGGAAAGGAAAGGCGAGGAGTGTGTGACAAACAATGATTCAGATAGGGATTTTGAGTATTACGTGAAGATTATCAGATGGTTAGAGTGCGAGGGGCATATTGAGCAGAACTTCCGGCAGAAATTCCTGACCTGGTACAGCTTGAGAGCTACCCCACAGGAGGTAAGGATTGTGAAAGTGTTTGTAGATACCTTTATCGAAGATCCTGCATCGCTTGCAGGGCAACTTGTTGACACCTTCTCAGAAAGTATTTCAAGCAAGAAATCGTGTGTTGTGCCAAACGGGTTCTGCATGAAGCTTTGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006950 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031519 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032922 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0035064 GO:0036293 GO:0040029 GO:0042393 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051569 GO:0051570 GO:0051571 GO:0051574 GO:0051716 GO:0055044 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1900109 GO:1900111 GO:1902275 GO:1905269 GO:2000026 GO:2000028 GO:2000241 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

782

Amino Acids

87.01

Weight (kDa)

6.44

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30200 AT4G30200 AT4G30200 AT4G30200
fragaria_vesca	FvH4_4g08010 FvH4_4g08010
malus_domestica	MD13G1252500.v1.1 MD16G1256500.v1.1
prunus_persica	Prupe.1G084700_v2.0.a1
pyrus_communis	pycom13g22550 pycom16g21760
rosa_chinensis	RchiOBHm_Chr4g0401761
rosa_laevigata	RLG00000009127
rosa_multiflora	Rmu_co8300969.1_g000001 Rmu_sc0001405.1_g000016
rosa_roxburghii	Rroxscaffold_5G00346250
rosa_rugosa	Rorug04G0032100 Rorug04G0032200
rosa_samantha	Rh4AG109000 Rh4BG102800 Rh4CG117300 Rh4DG100500
rosa_wichuraiana	Rw4G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1696
AccB1I	GGYRCC	2 cut(s)	236, 1269
AccB7I	CCANNNNNTGG	1 cut(s)	1874
AccI	GTMKAC	1 cut(s)	876
AccIII	TCCGGA	2 cut(s)	490, 583
AciI	CCGC	5 cut(s)	680, 838, 995, 1563, 2039
AclWI	GGATC	4 cut(s)	277, 825, 1145, 2234
AcoI	YGGCCR	4 cut(s)	34, 227, 433, 1131
AcsI	RAATTY	4 cut(s)	1245, 1834, 1957, 2159
AcuI	CTGAAG	3 cut(s)	264, 1091, 1518
AcvI	CACGTG	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	5 cut(s)	1146, 1376, 1447, 1987, 2174
AfiI	CCNNNNNNNGG	5 cut(s)	689, 1001, 1874, 2012, 2197
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	9 cut(s)	25, 97, 980, 1384, 1399, 1407, 1769, 1808, 2292
AjnI	CCWGG	2 cut(s)	833, 2168
AjuI	GAANNNNNNNTTGG	2 cut(s)	1236, 1268
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	4 cut(s)	277, 825, 1145, 2234
AlwNI	CAGNNNCTG	2 cut(s)	834, 1889
Ama87I	CYCGRG	2 cut(s)	649, 1772
Aor13HI	TCCGGA	2 cut(s)	490, 583
AoxI	GGCC	4 cut(s)	34, 227, 433, 1131
ApeKI	GCWGC	3 cut(s)	174, 669, 1691
ApoI	RAATTY	4 cut(s)	1245, 1834, 1957, 2159
AspLEI	GCGC	1 cut(s)	1779
AspS9I	GGNCC	5 cut(s)	646, 992, 1052, 1434, 1685
AsuHPI	GGTGA	4 cut(s)	401, 1342, 1583, 1779
AsuII	TTCGAA	1 cut(s)	167
AvaI	CYCGRG	2 cut(s)	649, 1772
AvaII	GGWCC	5 cut(s)	646, 992, 1052, 1434, 1685
BalI	TGGCCA	4 cut(s)	36, 229, 435, 1133
BanI	GGYRCC	2 cut(s)	236, 1269
BbrPI	CACGTG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	594, 1815
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	186, 681, 1703
BccI	CCATC	9 cut(s)	481, 776, 1012, 1673, 1729, 1907, 1925, 2006, 2109
BceAI	ACGGC	2 cut(s)	249, 667
BcgI	CGANNNNNNTGC	2 cut(s)	2225, 2259
BciT130I	CCWGG	2 cut(s)	835, 2170
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	2 cut(s)	160, 1573
BfaI	CTAG	3 cut(s)	530, 848, 1937
BfmI	CTRYAG	3 cut(s)	1368, 1510, 1689
BfuAI	ACCTGC	1 cut(s)	1696
BfuI	GTATCC	1 cut(s)	856
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	4 cut(s)	175, 670, 680, 1692
BlsI	GCNGC	4 cut(s)	176, 671, 681, 1693
BmcAI	AGTACT	2 cut(s)	1376, 1447
Bme1390I	CCNGG	2 cut(s)	835, 2170
Bme18I	GGWCC	5 cut(s)	646, 992, 1052, 1434, 1685
BmeT110I	CYCGRG	2 cut(s)	649, 1772
BmgT120I	GGNCC	5 cut(s)	646, 992, 1052, 1434, 1685
BmiI	GGNNCC	7 cut(s)	238, 263, 648, 993, 1271, 1744, 2004
BmrFI	CCNGG	2 cut(s)	835, 2170
BmrI	ACTGGG	2 cut(s)	1493, 1998
BmsI	GCATC	4 cut(s)	385, 627, 1698, 2255
BmuI	ACTGGG	2 cut(s)	1493, 1998
BpiI	GAAGAC	2 cut(s)	594, 1815
BpmI	CTGGAG	3 cut(s)	1152, 1347, 1473
Bpu14I	TTCGAA	1 cut(s)	167
BpuEI	CTTGAG	4 cut(s)	740, 902, 922, 2200
BsaAI	YACGTR	2 cut(s)	233, 2101
BsaJI	CCNNGG	2 cut(s)	37, 138
BsaWI	WCCGGW	4 cut(s)	490, 583, 1272, 1352
BsaXI	ACNNNNNCTCC	6 cut(s)	778, 808, 1108, 1138, 1446, 1476
Bsc4I	CCNNNNNNNGG	5 cut(s)	689, 1001, 1874, 2012, 2197
Bse1I	ACTGG	7 cut(s)	325, 436, 1006, 1499, 1855, 1962, 1993
Bse3DI	GCAATG	1 cut(s)	1118
BseAI	TCCGGA	2 cut(s)	490, 583
BseBI	CCWGG	2 cut(s)	835, 2170
BseDI	CCNNGG	2 cut(s)	37, 138
BseGI	GGATG	6 cut(s)	400, 964, 1195, 1684, 1720, 1740
BseLI	CCNNNNNNNGG	5 cut(s)	689, 1001, 1874, 2012, 2197
BseMI	GCAATG	1 cut(s)	1118
BseMII	CTCAG	6 cut(s)	573, 666, 841, 1254, 1896, 2292
BseNI	ACTGG	7 cut(s)	325, 436, 1006, 1499, 1855, 1962, 1993
BseRI	GAGGAG	1 cut(s)	2069
BseXI	GCAGC	3 cut(s)	186, 681, 1703
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	36, 229, 435, 1133
BshNI	GGYRCC	2 cut(s)	236, 1269
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	2 cut(s)	649, 1772
BsiSI	CCGG	5 cut(s)	491, 584, 1273, 1353, 2152
BslFI	GGGAC	5 cut(s)	113, 789, 937, 1448, 1850
BslI	CCNNNNNNNGG	5 cut(s)	689, 1001, 1874, 2012, 2197
BsmFI	GGGAC	5 cut(s)	113, 789, 937, 1448, 1850
BsnI	GGCC	4 cut(s)	36, 229, 435, 1133
BsoBI	CYCGRG	2 cut(s)	649, 1772
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	2 cut(s)	490, 583
Bsp1407I	TGTACA	1 cut(s)	1144
Bsp143I	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
BspACI	CCGC	5 cut(s)	680, 838, 995, 1563, 2039
BspANI	GGCC	4 cut(s)	36, 229, 435, 1133
BspCNI	CTCAG	6 cut(s)	572, 667, 840, 1253, 1895, 2291
BspEI	TCCGGA	2 cut(s)	490, 583
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	7 cut(s)	238, 263, 648, 993, 1271, 1744, 2004
BspMAI	CTGCAG	1 cut(s)	1693
BspMI	ACCTGC	1 cut(s)	1696
BspPI	GGATC	4 cut(s)	277, 825, 1145, 2234
BspT104I	TTCGAA	1 cut(s)	167
BspT107I	GGYRCC	2 cut(s)	236, 1269
BsrDI	GCAATG	1 cut(s)	1118
BsrGI	TGTACA	1 cut(s)	1144
BsrI	ACTGG	7 cut(s)	325, 436, 1006, 1499, 1855, 1962, 1993
BssECI	CCNNGG	2 cut(s)	37, 138
BssMI	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	835, 2170
Bst4CI	ACNGT	8 cut(s)	255, 417, 515, 885, 1213, 1320, 1379, 1633
BstAPI	GCANNNNNTGC	2 cut(s)	711, 2252
BstAUI	TGTACA	1 cut(s)	1144
BstBAI	YACGTR	2 cut(s)	233, 2101
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	4 cut(s)	565, 1781, 1891, 2253
BstDEI	CTNAG	6 cut(s)	559, 675, 827, 1240, 1882, 2278
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	6 cut(s)	400, 964, 1195, 1684, 1720, 1740
BstHHI	GCGC	1 cut(s)	1779
BstKTI	GATC	9 cut(s)	73, 163, 285, 823, 833, 1153, 1576, 1955, 2242
BstMBI	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
BstMWI	GCNNNNNNNGC	6 cut(s)	569, 711, 844, 2140, 2252, 2257
BstNI	CCWGG	2 cut(s)	835, 2170
BstNSI	RCATGY	3 cut(s)	488, 709, 1423
BstSCI	CCNGG	2 cut(s)	833, 2168
BstSFI	CTRYAG	3 cut(s)	1368, 1510, 1689
BstV1I	GCAGC	3 cut(s)	186, 681, 1703
BstV2I	GAAGAC	2 cut(s)	594, 1815
BstX2I	RGATCY	5 cut(s)	70, 282, 830, 1150, 2239
BstXI	CCANNNNNNTGG	2 cut(s)	1675, 1735
BstYI	RGATCY	5 cut(s)	70, 282, 830, 1150, 2239
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	4 cut(s)	36, 229, 435, 1133
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	2 cut(s)	1188, 2232
BtsCI	GGATG	6 cut(s)	400, 964, 1195, 1684, 1720, 1740
BtsIMutI	CAGTG	6 cut(s)	429, 1209, 1316, 1542, 1620, 1818
BveI	ACCTGC	1 cut(s)	1696
Cac8I	GCNNGC	4 cut(s)	565, 1781, 1891, 2253
CaiI	CAGNNNCTG	2 cut(s)	834, 1889
CciI	TCATGA	1 cut(s)	946
CfoI	GCGC	1 cut(s)	1779
Cfr13I	GGNCC	5 cut(s)	646, 992, 1052, 1434, 1685
CseI	GACGC	1 cut(s)	599
CsiI	ACCWGGT	1 cut(s)	2168
Csp6I	GTAC	5 cut(s)	1145, 1375, 1446, 1986, 2173
CviQI	GTAC	5 cut(s)	1145, 1375, 1446, 1986, 2173
DdeI	CTNAG	6 cut(s)	559, 675, 827, 1240, 1882, 2278
DpnI	GATC	9 cut(s)	72, 162, 284, 822, 832, 1152, 1575, 1954, 2241
DpnII	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
DraI	TTTAAA	2 cut(s)	732, 1977
DraIII	CACNNNGTG	1 cut(s)	236
EaeI	YGGCCR	4 cut(s)	34, 227, 433, 1131
EciI	GGCGGA	1 cut(s)	853
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	5 cut(s)	646, 992, 1052, 1434, 1685
Eco57I	CTGAAG	3 cut(s)	264, 1091, 1518
Eco72I	CACGTG	1 cut(s)	233
Eco88I	CYCGRG	2 cut(s)	649, 1772
EcoO109I	RGGNCCY	2 cut(s)	646, 1685
EcoRII	CCWGG	2 cut(s)	833, 2168
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaqI	GGGAC	5 cut(s)	113, 789, 937, 1448, 1850
FbaI	TGATCA	2 cut(s)	160, 1573
FblI	GTMKAC	1 cut(s)	876
Fnu4HI	GCNGC	4 cut(s)	175, 670, 680, 1692
FokI	GGATG	6 cut(s)	407, 971, 1202, 1691, 1727, 1747
Fsp4HI	GCNGC	4 cut(s)	175, 670, 680, 1692
FspBI	CTAG	3 cut(s)	530, 848, 1937
GlaI	GCGC	1 cut(s)	1778
GluI	GCNGC	4 cut(s)	175, 670, 680, 1692
GsuI	CTGGAG	3 cut(s)	1152, 1347, 1473
HaeIII	GGCC	4 cut(s)	36, 229, 435, 1133
HapII	CCGG	5 cut(s)	491, 584, 1273, 1353, 2152
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	1 cut(s)	1779
Hin6I	GCGC	1 cut(s)	1777
HinP1I	GCGC	1 cut(s)	1777
HincII	GTYRAC	2 cut(s)	1036, 2269
HindII	GTYRAC	2 cut(s)	1036, 2269
HindIII	AAGCTT	4 cut(s)	911, 941, 974, 2333
HinfI	GANTC	9 cut(s)	42, 469, 496, 904, 1060, 1088, 1097, 1403, 2075
HpaI	GTTAAC	1 cut(s)	1036
HpaII	CCGG	5 cut(s)	491, 584, 1273, 1353, 2152
HphI	GGTGA	4 cut(s)	401, 1342, 1583, 1779
Hpy166II	GTNNAC	3 cut(s)	877, 1036, 2269
Hpy188III	TCNNGA	9 cut(s)	269, 491, 584, 947, 980, 1050, 1169, 1407, 2164
Hpy8I	GTNNAC	3 cut(s)	877, 1036, 2269
HpyAV	CCTTC	5 cut(s)	362, 1270, 1539, 1935, 2284
HpyCH4III	ACNGT	8 cut(s)	255, 417, 515, 885, 1213, 1320, 1379, 1633
HpyCH4IV	ACGT	5 cut(s)	52, 126, 232, 769, 2100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	569, 711, 844, 2140, 2252, 2257
HpyF3I	CTNAG	6 cut(s)	559, 675, 827, 1240, 1882, 2278
HpySE526I	ACGT	5 cut(s)	52, 126, 232, 769, 2100
HspAI	GCGC	1 cut(s)	1777
Kpn2I	TCCGGA	2 cut(s)	490, 583
Ksp22I	TGATCA	2 cut(s)	160, 1573
KspAI	GTTAAC	1 cut(s)	1036
Kzo9I	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
LmnI	GCTCC	4 cut(s)	261, 786, 1171, 1748
Lsp1109I	GCAGC	3 cut(s)	186, 681, 1703
LweI	GCATC	4 cut(s)	385, 627, 1698, 2255
MabI	ACCWGGT	1 cut(s)	2168
MaeI	CTAG	3 cut(s)	530, 848, 1937
MaeII	ACGT	5 cut(s)	52, 126, 232, 769, 2100
MaeIII	GTNAC	9 cut(s)	249, 524, 623, 1256, 1348, 1387, 1477, 1501, 2062
MalI	GATC	9 cut(s)	72, 162, 284, 822, 832, 1152, 1575, 1954, 2241
MboI	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
MflI	RGATCY	5 cut(s)	70, 282, 830, 1150, 2239
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	4 cut(s)	36, 229, 435, 1133
MluCI	AATT	9 cut(s)	694, 1245, 1262, 1291, 1468, 1597, 1834, 1957, 2159
MluNI	TGGCCA	4 cut(s)	36, 229, 435, 1133
MlyI	GAGTC	2 cut(s)	913, 1097
MmeI	TCCRAC	1 cut(s)	1322
Mox20I	TGGCCA	4 cut(s)	36, 229, 435, 1133
MroI	TCCGGA	2 cut(s)	490, 583
MscI	TGGCCA	4 cut(s)	36, 229, 435, 1133
MseI	TTAA	8 cut(s)	182, 408, 578, 731, 1013, 1035, 1926, 1976
MslI	CAYNNNNRTG	1 cut(s)	1728
Msp20I	TGGCCA	4 cut(s)	36, 229, 435, 1133
MspI	CCGG	5 cut(s)	491, 584, 1273, 1353, 2152
MspR9I	CCNGG	2 cut(s)	835, 2170
MvaI	CCWGG	2 cut(s)	835, 2170
MwoI	GCNNNNNNNGC	6 cut(s)	569, 711, 844, 2140, 2252, 2257
NdeII	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
NlaIV	GGNNCC	7 cut(s)	238, 263, 648, 993, 1271, 1744, 2004
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	4 cut(s)	524, 1348, 1387, 2062
NspI	RCATGY	3 cut(s)	488, 709, 1423
NspV	TTCGAA	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	1772
PagI	TCATGA	1 cut(s)	946
PciI	ACATGT	1 cut(s)	484
PfeI	GAWTC	7 cut(s)	42, 469, 496, 1060, 1097, 1403, 2075
PflMI	CCANNNNNTGG	1 cut(s)	1874
PkrI	GCNGC	4 cut(s)	176, 671, 681, 1693
PleI	GAGTC	2 cut(s)	912, 1096
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
PpsI	GAGTC	2 cut(s)	912, 1096
Ppu21I	YACGTR	2 cut(s)	233, 2101
PpuMI	RGGWCCY	2 cut(s)	646, 1685
PscI	ACATGT	1 cut(s)	484
Psp5II	RGGWCCY	2 cut(s)	646, 1685
Psp6I	CCWGG	2 cut(s)	833, 2168
PspCI	CACGTG	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	833, 2168
PspN4I	GGNNCC	7 cut(s)	238, 263, 648, 993, 1271, 1744, 2004
PspPI	GGNCC	5 cut(s)	646, 992, 1052, 1434, 1685
PspPPI	RGGWCCY	2 cut(s)	646, 1685
PspXI	VCTCGAGB	1 cut(s)	1772
PstI	CTGCAG	1 cut(s)	1693
PstNI	CAGNNNCTG	2 cut(s)	834, 1889
PsuI	RGATCY	5 cut(s)	70, 282, 830, 1150, 2239
RsaI	GTAC	5 cut(s)	1146, 1376, 1447, 1987, 2174
RsaNI	GTAC	5 cut(s)	1145, 1375, 1446, 1986, 2173
RseI	CAYNNNNRTG	1 cut(s)	1728
SaqAI	TTAA	8 cut(s)	182, 408, 578, 731, 1013, 1035, 1926, 1976
SatI	GCNGC	4 cut(s)	175, 670, 680, 1692
Sau3AI	GATC	9 cut(s)	70, 160, 282, 820, 830, 1150, 1573, 1952, 2239
Sau96I	GGNCC	5 cut(s)	646, 992, 1052, 1434, 1685
ScaI	AGTACT	2 cut(s)	1376, 1447
SchI	GAGTC	2 cut(s)	913, 1097
ScrFI	CCNGG	2 cut(s)	835, 2170
SduI	GDGCHC	1 cut(s)	351
SexAI	ACCWGGT	1 cut(s)	2168
SfaNI	GCATC	4 cut(s)	385, 627, 1698, 2255
SfcI	CTRYAG	3 cut(s)	1368, 1510, 1689
Sfr274I	CTCGAG	1 cut(s)	1772
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	5 cut(s)	646, 992, 1052, 1434, 1685
SlaI	CTCGAG	1 cut(s)	1772
SmiMI	CAYNNNNRTG	1 cut(s)	1728
SmlI	CTYRAG	5 cut(s)	719, 901, 917, 1772, 2179
SmoI	CTYRAG	5 cut(s)	719, 901, 917, 1772, 2179
Sse9I	AATT	9 cut(s)	694, 1245, 1262, 1291, 1468, 1597, 1834, 1957, 2159
SsiI	CCGC	5 cut(s)	680, 838, 995, 1563, 2039
SspI	AATATT	1 cut(s)	1558
SspMI	CTAG	3 cut(s)	530, 848, 1937
StyD4I	CCNGG	2 cut(s)	833, 2168
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	8 cut(s)	255, 417, 515, 885, 1213, 1320, 1379, 1633
TaiI	ACGT	5 cut(s)	55, 129, 235, 772, 2103
TaqI	TCGA	7 cut(s)	167, 687, 1706, 1773, 1846, 1917, 2235
TasI	AATT	9 cut(s)	694, 1245, 1262, 1291, 1468, 1597, 1834, 1957, 2159
TatI	WGTACW	3 cut(s)	1144, 1374, 1445
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	7 cut(s)	42, 469, 496, 1060, 1097, 1403, 2075
Tru1I	TTAA	8 cut(s)	182, 408, 578, 731, 1013, 1035, 1926, 1976
Tru9I	TTAA	8 cut(s)	182, 408, 578, 731, 1013, 1035, 1926, 1976
TscAI	CASTG	6 cut(s)	436, 1216, 1323, 1542, 1627, 1825
TseFI	GTSAC	4 cut(s)	524, 1348, 1387, 2062
TseI	GCWGC	3 cut(s)	174, 669, 1691
Tsp45I	GTSAC	4 cut(s)	524, 1348, 1387, 2062
TspGWI	ACGGA	2 cut(s)	54, 479
TspRI	CASTG	6 cut(s)	436, 1216, 1323, 1542, 1627, 1825
Van91I	CCANNNNNTGG	1 cut(s)	1874
VpaK11BI	GGWCC	5 cut(s)	646, 992, 1052, 1434, 1685
XapI	RAATTY	4 cut(s)	1245, 1834, 1957, 2159
XceI	RCATGY	3 cut(s)	488, 709, 1423
XhoI	CTCGAG	1 cut(s)	1772
XmiI	GTMKAC	1 cut(s)	876
XspI	CTAG	3 cut(s)	530, 848, 1937
ZrmI	AGTACT	2 cut(s)	1376, 1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.