Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008417

Physical Location & Seq

Genomic Coordinates Reverse (-)

4693259 .. 4694528

Gene Structure 1270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0032200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGAAGACGATAAAGAAATCAATGTTGAAGCATTGGAAAACAACATTAGTTCAAAGCTTCACTGTGATTCACCCCTGTCTACCAAGTGCTGCATTTTCAGAGTTCCTCAGGTTATTAGGAGACAAAATCCAAAGGCATATCAACCTGATGTTGTCAAAATTGGACCCTTTCATGATCGAGGCAGTAAACACTTCCAACCCATGGAAAATGTGAAGCTCTGGTATTTGCGTAACCTTCTCTTGCGCAAGAATGTAACTTTGAAAACGTTAATTCAAGGCATTAATATTATAGAGTTTGAGAAACATGCCCGTGAGTTTTATGCAGAACCACTTGATCATCTAAACAAGAATGACTTCATTGAAATGATGATACTTGATGGTTTGTTCATAATCGAACTATTTCGGAAGCTTTGGTTTAGTGAAGATATCAGCATCAATGACCCGATATTCAACATGGATTGCATGTTTCAGTATTTATGCCATGACCTTTTGCTACTTGAGAATCAGCTTCCTTGGTTTGTTCTCAACTCTTTATATATCCTTACGAAGGAGACTGTTGATTGCTCCCTGAAAAAACTTCTGCTTGTCATCTTTTACTCAGAACCACAACTGGGACTTAACTCCAATCGCTTCATAGATCATAATACCATTTTCCTAGACACTGATCACTTTGATGATGATCCTGATCATGACGACAAAATTTTGCACATACTTGACCTCATAAGAACTTCAAGTGTTTTCAAATTCAAAGATGATAGGTTTCAGCAATCTTTCTACGGTCCTAACACGCAATTGAAAATACATCCGACTACTACTCTCTCAGACGTCGCAAGTGACATCAGTGACAGCATAGTGAATATAGAATTGGAAGACAGAGTTTATAACAATTTTCACCCGCCATCCTACGGCCTTAAGACACAGTTTATGCATCCGGCCACTACTCTATCAGAGGCAGGAGTCGTATTCAGAATGGATTCCGGCGATAGGAAGAGCATAATGGACATAGAATTCGAAGATGGAGTGTTTACTATTCCACCACTAGTCATTGGAGAGTTGACAGAATCACTCTTCAGGAGCTTGATTGCATTTGAGCAATGCTATCATGGATGTTCGCATAAAATAACTTCATATGTGGTTCTAATTAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006950 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031519 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032922 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0035064 GO:0036293 GO:0040029 GO:0042393 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051569 GO:0051570 GO:0051571 GO:0051574 GO:0051716 GO:0055044 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1900109 GO:1900111 GO:1902275 GO:1905269 GO:2000026 GO:2000028 GO:2000241 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

383

Amino Acids

44.58

Weight (kDa)

5.17

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	32 - 382	9.7e-74	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30200 AT4G30200 AT4G30200 AT4G30200
fragaria_vesca	FvH4_4g08010 FvH4_4g08010
malus_domestica	MD13G1252500.v1.1 MD16G1256500.v1.1
prunus_persica	Prupe.1G084700_v2.0.a1
pyrus_communis	pycom13g22550 pycom16g21760
rosa_chinensis	RchiOBHm_Chr4g0401761
rosa_laevigata	RLG00000009127
rosa_multiflora	Rmu_co8300969.1_g000001 Rmu_sc0001405.1_g000016
rosa_roxburghii	Rroxscaffold_5G00346250
rosa_rugosa	Rorug04G0032100 Rorug04G0032200
rosa_samantha	Rh4AG109000 Rh4BG102800 Rh4CG117300 Rh4DG100500
rosa_wichuraiana	Rw4G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
AatII	GACGTC	1 cut(s)	828
Acc16I	TGCGCA	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	896
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	933
AcsI	RAATTY	3 cut(s)	699, 743, 1007
AcuI	CTGAAG	1 cut(s)	1054
AcyI	GRCGYC	1 cut(s)	825
AfiI	CCNNNNNNNGG	5 cut(s)	202, 547, 611, 905, 984
AflII	CTTAAG	1 cut(s)	911
AhlI	ACTAGT	1 cut(s)	1039
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
AluBI	AGCT	5 cut(s)	58, 217, 409, 508, 1077
AluI	AGCT	5 cut(s)	58, 217, 409, 508, 1077
Alw26I	GTCTC	2 cut(s)	115, 545
AlwI	GGATC	1 cut(s)	674
AoxI	GGCC	2 cut(s)	907, 933
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	3 cut(s)	699, 743, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	992, 1024
AseI	ATTAAT	2 cut(s)	282, 1143
Asp700I	GAANNNNTTC	3 cut(s)	353, 399, 973
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	164, 779
AsuHPI	GGTGA	2 cut(s)	63, 884
AsuII	TTCGAA	1 cut(s)	1011
AvaII	GGWCC	2 cut(s)	164, 779
AxyI	CCTNAGG	1 cut(s)	108
BbsI	GAAGAC	2 cut(s)	12, 876
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	3 cut(s)	371, 907, 1010
BceAI	ACGGC	1 cut(s)	922
BclI	TGATCA	3 cut(s)	334, 664, 685
BcoDI	GTCTC	2 cut(s)	115, 545
BcuI	ACTAGT	1 cut(s)	1039
BfaI	CTAG	2 cut(s)	656, 1040
BfrI	CTTAAG	1 cut(s)	911
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme18I	GGWCC	2 cut(s)	164, 779
BmgT120I	GGNCC	2 cut(s)	164, 779
BmiI	GGNNCC	1 cut(s)	166
BmrI	ACTGGG	1 cut(s)	620
BmsI	GCATC	2 cut(s)	441, 937
BmuI	ACTGGG	1 cut(s)	620
BpiI	GAAGAC	2 cut(s)	12, 876
Bpu14I	TTCGAA	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	518
BsaBI	GATNNNNATC	2 cut(s)	678, 684
BsaHI	GRCGYC	1 cut(s)	825
BsaJI	CCNNGG	2 cut(s)	201, 512
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 547, 611, 905, 984
Bse1I	ACTGG	1 cut(s)	615
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	1100
Bse8I	GATNNNNATC	2 cut(s)	678, 684
BseDI	CCNNGG	2 cut(s)	201, 512
BseGI	GGATG	4 cut(s)	802, 899, 928, 1112
BseJI	GATNNNNATC	2 cut(s)	678, 684
BseLI	CCNNNNNNNGG	5 cut(s)	202, 547, 611, 905, 984
BseMI	GCAATG	1 cut(s)	1100
BseMII	CTCAG	3 cut(s)	122, 612, 834
BseNI	ACTGG	1 cut(s)	615
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	909, 935
BsiSI	CCGG	2 cut(s)	932, 978
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	5 cut(s)	202, 547, 611, 905, 984
BsmAI	GTCTC	2 cut(s)	115, 545
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	909, 935
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp143I	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	1 cut(s)	896
BspANI	GGCC	2 cut(s)	909, 935
BspCNI	CTCAG	3 cut(s)	121, 611, 833
BspHI	TCATGA	2 cut(s)	172, 688
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	674
BspQI	GCTCTTC	1 cut(s)	983
BspT104I	TTCGAA	1 cut(s)	1011
BspTI	CTTAAG	1 cut(s)	911
BsrDI	GCAATG	1 cut(s)	1100
BsrI	ACTGG	1 cut(s)	615
BssECI	CCNNGG	2 cut(s)	201, 512
BssMI	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
BssNI	GRCGYC	1 cut(s)	825
BssT1I	CCWWGG	2 cut(s)	201, 512
Bst4CI	ACNGT	4 cut(s)	65, 556, 779, 921
Bst6I	CTCTTC	2 cut(s)	983, 1073
BstACI	GRCGYC	1 cut(s)	825
BstAFI	CTTAAG	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	1011
BstDEI	CTNAG	3 cut(s)	108, 598, 820
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	4 cut(s)	802, 899, 928, 1112
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	6 cut(s)	178, 337, 640, 667, 682, 688
BstMAI	GTCTC	2 cut(s)	115, 545
BstMBI	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
BstNSI	RCATGY	2 cut(s)	308, 466
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	12, 876
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	909, 935
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	802, 899, 928, 1112
BtsIMutI	CAGTG	3 cut(s)	61, 660, 847
CciI	TCATGA	2 cut(s)	172, 688
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	164, 779
CviAII	CATG	8 cut(s)	173, 202, 305, 454, 463, 482, 689, 1103
CviJI	RGCY	7 cut(s)	58, 217, 409, 508, 909, 935, 1077
CviKI_1	RGCY	7 cut(s)	58, 217, 409, 508, 909, 935, 1077
DdeI	CTNAG	3 cut(s)	108, 598, 820
DpnI	GATC	6 cut(s)	177, 336, 639, 666, 681, 687
DpnII	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
EaeI	YGGCCR	1 cut(s)	933
Eam1104I	CTCTTC	2 cut(s)	983, 1073
EarI	CTCTTC	2 cut(s)	983, 1073
Eco130I	CCWWGG	2 cut(s)	201, 512
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	2 cut(s)	164, 779
Eco57I	CTGAAG	1 cut(s)	1054
Eco81I	CCTNAGG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	1007
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	201, 512
EcoT22I	ATGCAT	1 cut(s)	930
ErhI	CCWWGG	2 cut(s)	201, 512
FaeI	CATG	8 cut(s)	176, 205, 308, 457, 466, 485, 692, 1106
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	8 cut(s)	172, 201, 304, 453, 462, 481, 688, 1102
FauI	CCCGC	1 cut(s)	903
FauNDI	CATATG	1 cut(s)	1129
FbaI	TGATCA	3 cut(s)	334, 664, 685
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	4 cut(s)	789, 886, 915, 1119
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	2 cut(s)	656, 1040
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	909, 935
HapII	CCGG	2 cut(s)	932, 978
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	825
Hin1II	CATG	8 cut(s)	176, 205, 308, 457, 466, 485, 692, 1106
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	1056
HindII	GTYRAC	1 cut(s)	1056
HindIII	AAGCTT	2 cut(s)	56, 407
HinfI	GANTC	5 cut(s)	68, 502, 957, 974, 1061
HpaII	CCGG	2 cut(s)	932, 978
HphI	GGTGA	2 cut(s)	63, 884
Hpy166II	GTNNAC	4 cut(s)	81, 188, 1026, 1056
Hpy188I	TCNGA	7 cut(s)	101, 405, 601, 807, 823, 949, 968
Hpy188III	TCNNGA	4 cut(s)	173, 683, 689, 1072
Hpy8I	GTNNAC	4 cut(s)	81, 188, 1026, 1056
Hpy99I	CGWCG	1 cut(s)	830
HpyAV	CCTTC	2 cut(s)	245, 541
HpyCH4III	ACNGT	4 cut(s)	65, 556, 779, 921
HpyCH4IV	ACGT	2 cut(s)	266, 825
HpyCH4V	TGCA	6 cut(s)	93, 323, 462, 706, 928, 1085
HpyF3I	CTNAG	3 cut(s)	108, 598, 820
HpySE526I	ACGT	2 cut(s)	266, 825
Hsp92I	GRCGYC	1 cut(s)	825
Hsp92II	CATG	8 cut(s)	176, 205, 308, 457, 466, 485, 692, 1106
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	3 cut(s)	334, 664, 685
Kzo9I	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
LguI	GCTCTTC	1 cut(s)	983
LmnI	GCTCC	2 cut(s)	569, 1074
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	441, 937
MaeI	CTAG	2 cut(s)	656, 1040
MaeII	ACGT	2 cut(s)	266, 825
MaeIII	GTNAC	4 cut(s)	230, 253, 833, 842
MalI	GATC	6 cut(s)	177, 336, 639, 666, 681, 687
MboI	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
MboII	GAAGA	6 cut(s)	17, 434, 881, 1000, 1025, 1060
MfeI	CAATTG	1 cut(s)	791
MluCI	AATT	9 cut(s)	159, 270, 699, 743, 791, 863, 886, 1007, 1140
MlyI	GAGTC	1 cut(s)	966
MmeI	TCCRAC	2 cut(s)	220, 830
MnlI	CCTC	4 cut(s)	117, 173, 728, 943
Mph1103I	ATGCAT	1 cut(s)	930
MroXI	GAANNNNTTC	3 cut(s)	353, 399, 973
MseI	TTAA	5 cut(s)	269, 282, 618, 912, 1143
MslI	CAYNNNNRTG	3 cut(s)	309, 362, 672
MspCI	CTTAAG	1 cut(s)	911
MspI	CCGG	2 cut(s)	932, 978
MunI	CAATTG	1 cut(s)	791
NcoI	CCATGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
NlaIII	CATG	8 cut(s)	176, 205, 308, 457, 466, 485, 692, 1106
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	833, 842
NsbI	TGCGCA	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	930
NspI	RCATGY	2 cut(s)	308, 466
NspV	TTCGAA	1 cut(s)	1011
PagI	TCATGA	2 cut(s)	172, 688
PciSI	GCTCTTC	1 cut(s)	983
PdmI	GAANNNNTTC	3 cut(s)	353, 399, 973
PfeI	GAWTC	4 cut(s)	68, 502, 974, 1061
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	965
PpsI	GAGTC	1 cut(s)	965
PshBI	ATTAAT	2 cut(s)	282, 1143
PsiI	TTATAA	1 cut(s)	882
Psp1406I	AACGTT	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	164, 779
RseI	CAYNNNNRTG	3 cut(s)	309, 362, 672
SapI	GCTCTTC	1 cut(s)	983
SaqAI	TTAA	5 cut(s)	269, 282, 618, 912, 1143
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	6 cut(s)	175, 334, 637, 664, 679, 685
Sau96I	GGNCC	2 cut(s)	164, 779
SchI	GAGTC	1 cut(s)	966
SfaNI	GCATC	2 cut(s)	441, 937
SfuI	TTCGAA	1 cut(s)	1011
SinI	GGWCC	2 cut(s)	164, 779
SmiMI	CAYNNNNRTG	3 cut(s)	309, 362, 672
SmlI	CTYRAG	2 cut(s)	497, 911
SmoI	CTYRAG	2 cut(s)	497, 911
SpeI	ACTAGT	1 cut(s)	1039
Sse9I	AATT	9 cut(s)	159, 270, 699, 743, 791, 863, 886, 1007, 1140
SsiI	CCGC	1 cut(s)	896
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	2 cut(s)	656, 1040
StyI	CCWWGG	2 cut(s)	201, 512
TaaI	ACNGT	4 cut(s)	65, 556, 779, 921
TaiI	ACGT	2 cut(s)	269, 828
TaqI	TCGA	3 cut(s)	178, 393, 1011
TasI	AATT	9 cut(s)	159, 270, 699, 743, 791, 863, 886, 1007, 1140
TfiI	GAWTC	4 cut(s)	68, 502, 974, 1061
Tru1I	TTAA	5 cut(s)	269, 282, 618, 912, 1143
Tru9I	TTAA	5 cut(s)	269, 282, 618, 912, 1143
TscAI	CASTG	3 cut(s)	68, 667, 847
TseFI	GTSAC	2 cut(s)	833, 842
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	2 cut(s)	833, 842
TspDTI	ATGAA	5 cut(s)	161, 346, 376, 622, 1116
TspRI	CASTG	3 cut(s)	68, 667, 847
Van91I	CCANNNNNTGG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	911
VpaK11BI	GGWCC	2 cut(s)	164, 779
VspI	ATTAAT	2 cut(s)	282, 1143
XagI	CCTNNNNNAGG	1 cut(s)	545
XapI	RAATTY	3 cut(s)	699, 743, 1007
XceI	RCATGY	2 cut(s)	308, 466
XmiI	GTMKAC	1 cut(s)	80
XmnI	GAANNNNTTC	3 cut(s)	353, 399, 973
XspI	CTAG	2 cut(s)	656, 1040
ZraI	GACGTC	1 cut(s)	826
Zsp2I	ATGCAT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.