Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001405.1

Orthogroup ID

OG0008417

Physical Location & Seq

Genomic Coordinates Reverse (-)

62819 .. 67294

Gene Structure 4476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001405.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atggcctcggattcttctactcaaggacttgcacaggatctgtcaaattgcagtaacttaagtatagacaaaaagagaaaacttgtccatgaaatatcaaaatggtcacagggtgcttctgaagtgctacaggcatggagtcgtcaggagattttacaaattctatgtgtagagatggggaaagaaaggaaatatactggcttgacaaaagtgaaaataatagagcaccttctgaaagttgtggctgaaaacaaatcaggaggaggtgatgttgtagctgacgttaaaccacagtcatcctctgcatctggccaaagaattaccaaaagacagaggaaaactgagaatccatctcgactatctgttccagaaaacaattctcccatcaatagtagtggttgcgaattagcgaatactatattctgcaaaaactcagcttgcagagcttccttaaatcgagaagatgcattttgcaagaggtgttcgtgttgcatatgttatcagtatgatgataacaaggatcctagcctatggttggtttgcagctcggatcctccattccagggtaaatcatgtggcatgtcgtgccaccttgattgtgcttttaaacatgcaagttctggtattggaaaagagggacaatgcatgggacttgatggaagcttttattgtgtgtcttgtggtaaattgaatgatttgctcggatcctggcgaaaacaactagtgatagcaaaggataccagacgggtggacatactgtgctatcgtgtgtccttgagtcataagtttctcaaaggaactgtgaagtatcaaaagcttcacgagattgtagatgaagctgtgaagaagcttgaagctgaagtgggtctgttaactggcttacccaataagatgggtcgtggtattgttaataggctttcttctggaccagaggttcagagactttgtgcatttgctgtggactcccttgattcattagtttccaatgcaacgttccatccattgcccaagcctgaaatacaagctatttggtcccacagttacaaggttatcagatggttagaatgtcagggacatatcgagcagaactttagacaaaaatttctgacttggtatagcttgagagcaaccccacaggaggtaaggattgtgaaggtgtttgtggatacctttattgaagatccagcatctcttgcagggcaacttatagacacctttgcagaaagcatttcaagcaagaagtcatctgttgtgccaagtgggttctgcatgaaactttggcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005911 GO:0006950 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009892 GO:0009893 GO:0009987 GO:0010048 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0016604 GO:0016607 GO:0017053 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031519 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032922 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0035064 GO:0036293 GO:0040029 GO:0042393 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051569 GO:0051570 GO:0051571 GO:0051574 GO:0051716 GO:0055044 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0070013 GO:0070417 GO:0070482 GO:0080090 GO:0090568 GO:0140030 GO:0140034 GO:1900109 GO:1900111 GO:1902275 GO:1905269 GO:2000026 GO:2000028 GO:2000241 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD_Oberon fn3

Protein Analysis

428

Amino Acids

47.57

Weight (kDa)

8.87

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30200 AT4G30200 AT4G30200 AT4G30200
fragaria_vesca	FvH4_4g08010 FvH4_4g08010
malus_domestica	MD13G1252500.v1.1 MD16G1256500.v1.1
prunus_persica	Prupe.1G084700_v2.0.a1
pyrus_communis	pycom13g22550 pycom16g21760
rosa_chinensis	RchiOBHm_Chr4g0401761
rosa_laevigata	RLG00000009127
rosa_multiflora	Rmu_co8300969.1_g000001 Rmu_sc0001405.1_g000016
rosa_roxburghii	Rroxscaffold_5G00346250
rosa_rugosa	Rorug04G0032100 Rorug04G0032200
rosa_samantha	Rh4AG109000 Rh4BG102800 Rh4CG117300 Rh4DG100500
rosa_wichuraiana	Rw4G008850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	992
AclWI	GGATC	8 cut(s)	45, 515, 528, 545, 558, 699, 712, 1175
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	159, 1100
AcuI	CTGAAG	2 cut(s)	141, 879
AdeI	CACNNNGTG	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	535, 563, 1138
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	691, 854, 1178, 1233
AhlI	ACTAGT	1 cut(s)	721
AjnI	CCWGG	2 cut(s)	561, 707
AjuI	GAANNNNNNNTTGG	2 cut(s)	977, 1009
AloI	GAACNNNNNNTCC	2 cut(s)	918, 950
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	934
AlwI	GGATC	8 cut(s)	45, 515, 528, 545, 558, 699, 712, 1175
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	3, 310
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	2 cut(s)	159, 1100
AspS9I	GGNCC	2 cut(s)	926, 1032
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	926, 1032
BalI	TGGCCA	1 cut(s)	312
BamHI	GGATCC	3 cut(s)	520, 550, 704
BauI	CACGAG	1 cut(s)	821
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	7 cut(s)	169, 358, 392, 650, 886, 1005, 1050
BciT130I	CCWGG	2 cut(s)	563, 709
BciVI	GTATCC	2 cut(s)	730, 1159
BcoDI	GTCTC	1 cut(s)	934
BcuI	ACTAGT	1 cut(s)	721
BfaI	CTAG	2 cut(s)	525, 722
BfmI	CTRYAG	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	58
BfuI	GTATCC	2 cut(s)	730, 1159
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	2 cut(s)	563, 709
Bme18I	GGWCC	2 cut(s)	926, 1032
BmgT120I	GGNCC	2 cut(s)	926, 1032
BmiI	GGNNCC	4 cut(s)	522, 552, 706, 1034
BmrFI	CCNGG	2 cut(s)	563, 709
BmsI	GCATC	3 cut(s)	314, 454, 1196
BpuEI	CTTGAG	3 cut(s)	6, 796, 1141
BsaJI	CCNNGG	2 cut(s)	6, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	535, 563, 1138
Bse1I	ACTGG	2 cut(s)	202, 880
Bse3DI	GCAATG	1 cut(s)	1001
BseBI	CCWGG	2 cut(s)	563, 709
BseDI	CCNNGG	2 cut(s)	6, 562
BseGI	GGATG	2 cut(s)	296, 997
BseLI	CCNNNNNNNGG	3 cut(s)	535, 563, 1138
BseMI	GCAATG	1 cut(s)	1001
BseMII	CTCAG	2 cut(s)	333, 447
BseNI	ACTGG	2 cut(s)	202, 880
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	555
BshFI	GGCC	2 cut(s)	5, 312
BsiHKAI	GWGCWC	1 cut(s)	228
BslFI	GGGAC	4 cut(s)	651, 663, 1018, 1086
BslI	CCNNNNNNNGG	3 cut(s)	535, 563, 1138
BsmAI	GTCTC	1 cut(s)	934
BsmFI	GGGAC	4 cut(s)	651, 663, 1018, 1086
BsnI	GGCC	2 cut(s)	5, 312
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	5 cut(s)	37, 520, 550, 704, 1180
BspANI	GGCC	2 cut(s)	5, 312
BspCNI	CTCAG	2 cut(s)	334, 446
BspLI	GGNNCC	4 cut(s)	522, 552, 706, 1034
BspPI	GGATC	8 cut(s)	45, 515, 528, 545, 558, 699, 712, 1175
BspTI	CTTAAG	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	1001
BsrI	ACTGG	2 cut(s)	202, 880
BssECI	CCNNGG	2 cut(s)	6, 562
BssMI	GATC	5 cut(s)	37, 520, 550, 704, 1180
BssSI	CACGAG	1 cut(s)	821
Bst2BI	CACGAG	1 cut(s)	821
Bst2UI	CCWGG	2 cut(s)	563, 709
Bst4CI	ACNGT	4 cut(s)	294, 759, 802, 1040
BstAFI	CTTAAG	1 cut(s)	58
BstAPI	GCANNNNNTGC	2 cut(s)	585, 1193
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	342, 433
BstF5I	GGATG	2 cut(s)	296, 997
BstKTI	GATC	5 cut(s)	40, 523, 553, 707, 1183
BstMAI	GTCTC	1 cut(s)	934
BstMBI	GATC	5 cut(s)	37, 520, 550, 704, 1180
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 585, 1193, 1233
BstNI	CCWGG	2 cut(s)	563, 709
BstNSI	RCATGY	2 cut(s)	583, 614
BstSCI	CCNGG	2 cut(s)	561, 707
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	555
BstX2I	RGATCY	5 cut(s)	37, 520, 550, 704, 1180
BstXI	CCANNNNNNTGG	2 cut(s)	748, 892
BstYI	RGATCY	5 cut(s)	37, 520, 550, 704, 1180
BsuI	GTATCC	2 cut(s)	730, 1159
BsuRI	GGCC	2 cut(s)	5, 312
BtsCI	GGATG	2 cut(s)	296, 997
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	926, 1032
CspCI	CAANNNNNGTGG	4 cut(s)	376, 411, 578, 613
CviAII	CATG	7 cut(s)	89, 135, 573, 580, 611, 646, 1270
DdeI	CTNAG	2 cut(s)	342, 433
DpnI	GATC	5 cut(s)	39, 522, 552, 706, 1182
DpnII	GATC	5 cut(s)	37, 520, 550, 704, 1180
DraI	TTTAAA	1 cut(s)	607
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	926, 1032
Eco57I	CTGAAG	2 cut(s)	141, 879
EcoRII	CCWGG	2 cut(s)	561, 707
EcoT22I	ATGCAT	2 cut(s)	469, 647
FaeI	CATG	7 cut(s)	92, 138, 576, 583, 614, 649, 1273
FaqI	GGGAC	4 cut(s)	651, 663, 1018, 1086
FatI	CATG	7 cut(s)	88, 134, 572, 579, 610, 645, 1269
FauNDI	CATATG	1 cut(s)	494
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	2 cut(s)	283, 984
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	2 cut(s)	525, 722
GluI	GCNGC	1 cut(s)	544
HaeIII	GGCC	2 cut(s)	5, 312
Hin1II	CATG	7 cut(s)	92, 138, 576, 583, 614, 649, 1273
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HindIII	AAGCTT	3 cut(s)	661, 815, 848
HinfI	GANTC	6 cut(s)	11, 139, 346, 778, 962, 971
HpaI	GTTAAC	1 cut(s)	873
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	751, 873, 961
Hpy188I	TCNGA	8 cut(s)	10, 121, 234, 550, 704, 939, 1055, 1107
Hpy188III	TCNNGA	7 cut(s)	146, 258, 354, 368, 458, 821, 924
Hpy8I	GTNNAC	3 cut(s)	751, 873, 961
HpyAV	CCTTC	2 cut(s)	239, 1147
HpyCH4III	ACNGT	4 cut(s)	294, 759, 802, 1040
HpyCH4IV	ACGT	2 cut(s)	282, 992
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 585, 1193, 1233
HpyF3I	CTNAG	2 cut(s)	342, 433
HpySE526I	ACGT	2 cut(s)	282, 992
Hsp92II	CATG	7 cut(s)	92, 138, 576, 583, 614, 649, 1273
KspAI	GTTAAC	1 cut(s)	873
Kzo9I	GATC	5 cut(s)	37, 520, 550, 704, 1180
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	3 cut(s)	314, 454, 1196
MaeI	CTAG	2 cut(s)	525, 722
MaeII	ACGT	2 cut(s)	282, 992
MaeIII	GTNAC	3 cut(s)	53, 105, 1040
MalI	GATC	5 cut(s)	39, 522, 552, 706, 1182
MboI	GATC	5 cut(s)	37, 520, 550, 704, 1180
MboII	GAAGA	5 cut(s)	6, 473, 856, 912, 1190
MflI	RGATCY	5 cut(s)	37, 520, 550, 704, 1180
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	7 cut(s)	46, 159, 318, 376, 404, 686, 1100
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	3 cut(s)	148, 787, 956
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	2 cut(s)	469, 647
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	6 cut(s)	59, 285, 452, 606, 872, 909
Msp20I	TGGCCA	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	563, 709
MvaI	CCWGG	2 cut(s)	563, 709
MwoI	GCNNNNNNNGC	4 cut(s)	443, 585, 1193, 1233
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	5 cut(s)	37, 520, 550, 704, 1180
NlaIII	CATG	7 cut(s)	92, 138, 576, 583, 614, 649, 1273
NlaIV	GGNNCC	4 cut(s)	522, 552, 706, 1034
NmuCI	GTSAC	1 cut(s)	105
NsiI	ATGCAT	2 cut(s)	469, 647
NspI	RCATGY	2 cut(s)	583, 614
PfeI	GAWTC	3 cut(s)	11, 346, 971
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	3 cut(s)	147, 786, 956
PpsI	GAGTC	3 cut(s)	147, 786, 956
Psp1406I	AACGTT	1 cut(s)	992
Psp6I	CCWGG	2 cut(s)	561, 707
PspGI	CCWGG	2 cut(s)	561, 707
PspN4I	GGNNCC	4 cut(s)	522, 552, 706, 1034
PspPI	GGNCC	2 cut(s)	926, 1032
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	5 cut(s)	37, 520, 550, 704, 1180
SaqAI	TTAA	6 cut(s)	59, 285, 452, 606, 872, 909
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	5 cut(s)	37, 520, 550, 704, 1180
Sau96I	GGNCC	2 cut(s)	926, 1032
SchI	GAGTC	3 cut(s)	148, 787, 956
ScrFI	CCNGG	2 cut(s)	563, 709
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	3 cut(s)	314, 454, 1196
SfcI	CTRYAG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	926, 1032
SmlI	CTYRAG	4 cut(s)	21, 58, 775, 1120
SmoI	CTYRAG	4 cut(s)	21, 58, 775, 1120
SpeI	ACTAGT	1 cut(s)	721
Sse9I	AATT	7 cut(s)	46, 159, 318, 376, 404, 686, 1100
SspMI	CTAG	2 cut(s)	525, 722
StyD4I	CCNGG	2 cut(s)	561, 707
TaaI	ACNGT	4 cut(s)	294, 759, 802, 1040
TaiI	ACGT	2 cut(s)	285, 995
TaqI	TCGA	3 cut(s)	355, 457, 1080
TasI	AATT	7 cut(s)	46, 159, 318, 376, 404, 686, 1100
TfiI	GAWTC	3 cut(s)	11, 346, 971
Tru1I	TTAA	6 cut(s)	59, 285, 452, 606, 872, 909
Tru9I	TTAA	6 cut(s)	59, 285, 452, 606, 872, 909
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	4 cut(s)	105, 849, 963, 1286
Vha464I	CTTAAG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	926, 1032
XapI	RAATTY	2 cut(s)	159, 1100
XceI	RCATGY	2 cut(s)	583, 614
XspI	CTAG	2 cut(s)	525, 722
Zsp2I	ATGCAT	2 cut(s)	469, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.