MD17G1117900.v1.1

RPM1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005965
Physical Location & Seq
Forward (+)
10240478 .. 10243406
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1117900.v1.1.491

Sequence Viewer

Length: 225 bp
ATGGGGGAAAAGGGTGTACCGTTGCCAAAATTTGGTGAATGGGATGTCAATGATCCAGCATCAGCTGAGGGATTCACTGTAATCTTCAACAAGGCTAGGACTGAGAAGAAGACAGGTGGCAGACCTGACTCACCATCAAAGGAGGATCGCACGTACAAGCATGAAGCAGTTCTCGGAAAGCCTCCATCTAAAAAATGGTTTTGCTGCTTGCGTGCGGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

75

Amino Acids

8.24

Weight (kDa)

9.0

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 3 - 37 2.6e-20 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 32
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 47, 153
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 18, 155
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AlwI GGATC 2 cut(s) 47, 153
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 47, 123
BbsI GAAGAC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 142, 193
BfaI CTAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BmsI GCATC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 57, 93
BseXI GCAGC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 32
Bsp143I GATC 2 cut(s) 52, 145
BspACI CCGC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 58, 94
BspHI TCATGA 1 cut(s) 221
BspPI GGATC 2 cut(s) 47, 153
BssMI GATC 2 cut(s) 52, 145
Bst4CI ACNGT 2 cut(s) 21, 79
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 209, 213
BstDEI CTNAG 2 cut(s) 66, 102
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 55, 148
BstMBI GATC 2 cut(s) 52, 145
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 209, 213
CciI TCATGA 1 cut(s) 221
Csp6I GTAC 2 cut(s) 17, 154
CviAII CATG 2 cut(s) 161, 222
CviJI RGCY 3 cut(s) 65, 95, 181
CviKI_1 RGCY 3 cut(s) 65, 95, 181
CviQI GTAC 2 cut(s) 17, 154
DdeI CTNAG 2 cut(s) 66, 102
DpnI GATC 2 cut(s) 54, 147
DpnII GATC 2 cut(s) 52, 145
FaeI CATG 2 cut(s) 164, 225
FaiI YATR 2 cut(s) 162, 223
FatI CATG 2 cut(s) 160, 221
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 164, 225
HinfI GANTC 3 cut(s) 72, 128, 218
HphI GGTGA 2 cut(s) 47, 123
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 21, 79
HpyCH4IV ACGT 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 66, 102
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 2 cut(s) 164, 225
Kzo9I GATC 2 cut(s) 52, 145
LpnPI CCDG 3 cut(s) 69, 99, 138
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 96
MaeII ACGT 1 cut(s) 152
MalI GATC 2 cut(s) 54, 147
MboI GATC 2 cut(s) 52, 145
MboII GAAGA 3 cut(s) 76, 118, 121
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 3 cut(s) 61, 136, 192
MroXI GAANNNNTTC 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 65
NdeII GATC 2 cut(s) 52, 145
NlaIII CATG 2 cut(s) 164, 225
PagI TCATGA 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 18, 155
RsaNI GTAC 2 cut(s) 17, 154
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 2 cut(s) 52, 145
SchI GAGTC 1 cut(s) 122
SetI ASST 4 cut(s) 67, 118, 127, 155
SfaNI GCATC 1 cut(s) 68
Sse9I AATT 1 cut(s) 29
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 21, 79
TaiI ACGT 1 cut(s) 155
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 72
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 32
XapI RAATTY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.