Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000529.1

Orthogroup ID

OG0005965

Physical Location & Seq

Genomic Coordinates Forward (+)

17945 .. 19265

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000529.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgccaaagttcggtgaatgggacgtcagtgatccagcatcagcagagggattcgcagtaatcttcaacaaggcaaggactcaggaaaagactggtggcagacctgagtcaccagcagaggatgactgcacatataagcatggaccagttctcggaaagcctaccactgtaaacaatgccggagtggttggatgcatactaaaccctgaagcttttagagcagtactcaataagaacgcagaagaagtcgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

84

Amino Acids

8.99

Weight (kDa)

4.89

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04410
fragaria_vesca	FvH4_6g40550
malus_domestica	MD09G1128500.v1.1 MD15G1247700.v1.1 MD15G1337200.v1.1 MD17G1117900.v1.1
prunus_persica	Prupe.3G196700_v2.0.a1 Prupe.3G196700_v2.0.a1
pyrus_communis	pycom17g10840
rosa_chinensis	RchiOBHm_Chr2g0155811 RchiOBHm_Chr6g0295941
rosa_laevigata	RLG00000011755
rosa_multiflora	Rmu_sc0000529.1_g000005 Rmu_sc0003417.1_g000011 Rmu_sc0016143.1_g000004 Rmu_sc0017500.1_g000002 Rmu_sc0017500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00172040
rosa_rugosa	Rorug02G0450000 Rorug02G0450000 Rorug06G0255200
rosa_samantha	Rh2AG516300 Rh2BG527200 Rh2CG501200 Rh2DG536200 Rh6BG376700
rosa_wichuraiana	Rw2G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	11, 152
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
AlwI	GGATC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	26, 102
AvaII	GGWCC	1 cut(s)	143
BmcAI	AGTACT	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmsI	GCATC	2 cut(s)	47, 182
BoxI	GACNNNNGTC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BsaHI	GRCGYC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 152
Bse1I	ACTGG	2 cut(s)	97, 146
BseGI	GGATG	2 cut(s)	127, 197
BseLI	CCNNNNNNNGG	2 cut(s)	11, 152
BseMII	CTCAG	2 cut(s)	95, 96
BseNI	ACTGG	2 cut(s)	97, 146
BsgI	GTGCAG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	11, 152
BsmFI	GGGAC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	94, 97
BspPI	GGATC	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	97, 146
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	81, 105
BstF5I	GGATG	2 cut(s)	127, 197
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstPAI	GACNNNNGTC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	127, 197
BtsIMutI	CAGTG	2 cut(s)	34, 165
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	2 cut(s)	160, 212
CviKI_1	RGCY	2 cut(s)	160, 212
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	81, 105
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	197
FaeI	CATG	1 cut(s)	143
FaiI	YATR	4 cut(s)	133, 135, 141, 197
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	139
FokI	GGATG	2 cut(s)	134, 204
HapII	CCGG	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	3 cut(s)	51, 79, 107
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	2 cut(s)	26, 102
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	129, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	81, 105
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	31
LpnPI	CCDG	8 cut(s)	48, 68, 78, 117, 126, 159, 193, 219
LweI	GCATC	2 cut(s)	47, 182
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	55, 254
MlyI	GAGTC	2 cut(s)	73, 116
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	40, 112
Mph1103I	ATGCAT	1 cut(s)	197
MspI	CCGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	108
NsiI	ATGCAT	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	51
PleI	GAGTC	2 cut(s)	73, 115
PpsI	GAGTC	2 cut(s)	73, 115
PshAI	GACNNNNGTC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	143
ScaI	AGTACT	1 cut(s)	225
SchI	GAGTC	2 cut(s)	73, 116
SetI	ASST	3 cut(s)	27, 106, 214
SfaNI	GCATC	2 cut(s)	47, 182
SinI	GGWCC	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	249
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	2 cut(s)	34, 172
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspRI	CASTG	2 cut(s)	34, 172
VpaK11BI	GGWCC	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	25
ZrmI	AGTACT	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.