Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003417.1

Orthogroup ID

OG0005965

Physical Location & Seq

Genomic Coordinates Reverse (-)

45052 .. 48139

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003417.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atggcggataagggtgtaccactgccaaagtttggtgaatgggacgtcaatgatccagcatcagcggaggggttcacagtaatcttcaacaaggctaggactgagaaaaaggctggtggcagacctgagtcaccatcaaaggatgactgcacatataagcatggagcagttctcggaaagcctcccactaaaaaatggttttgctgcttgcgtgcggaatcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

74

Amino Acids

8.1

Weight (kDa)

8.86

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04410
fragaria_vesca	FvH4_6g40550
malus_domestica	MD09G1128500.v1.1 MD15G1247700.v1.1 MD15G1337200.v1.1 MD17G1117900.v1.1
prunus_persica	Prupe.3G196700_v2.0.a1 Prupe.3G196700_v2.0.a1
pyrus_communis	pycom17g10840
rosa_chinensis	RchiOBHm_Chr2g0155811 RchiOBHm_Chr6g0295941
rosa_laevigata	RLG00000011755
rosa_multiflora	Rmu_sc0000529.1_g000005 Rmu_sc0003417.1_g000011 Rmu_sc0016143.1_g000004 Rmu_sc0017500.1_g000002 Rmu_sc0017500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00172040
rosa_rugosa	Rorug02G0450000 Rorug02G0450000 Rorug06G0255200
rosa_samantha	Rh2AG516300 Rh2BG527200 Rh2CG501200 Rh2DG536200 Rh6BG376700
rosa_wichuraiana	Rw2G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	3 cut(s)	5, 65, 215
AclWI	GGATC	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	88
AlwI	GGATC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	47, 123
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	68
BoxI	GACNNNNGTC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
BsaHI	GRCGYC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	93, 117
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	3 cut(s)	5, 65, 215
BspCNI	CTCAG	2 cut(s)	94, 118
BspPI	GGATC	1 cut(s)	47
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	209, 213
BstDEI	CTNAG	2 cut(s)	102, 126
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstPAI	GACNNNNGTC	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	209, 213
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	3 cut(s)	95, 113, 181
CviKI_1	RGCY	3 cut(s)	95, 113, 181
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	102, 126
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	20
FaeI	CATG	1 cut(s)	164
FaiI	YATR	3 cut(s)	154, 156, 162
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	164
HinfI	GANTC	2 cut(s)	128, 218
HphI	GGTGA	2 cut(s)	47, 123
Hpy166II	GTNNAC	2 cut(s)	17, 75
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	2 cut(s)	17, 75
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	102, 126
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	3 cut(s)	69, 99, 138
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	61, 192
MspA1I	CMGCKG	1 cut(s)	65
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PshAI	GACNNNNGTC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	137
SetI	ASST	2 cut(s)	48, 127
SfaNI	GCATC	1 cut(s)	68
SgeI	CNNG	8 cut(s)	68, 103, 108, 126, 137, 173, 185, 220
SsiI	CCGC	3 cut(s)	5, 65, 215
SspMI	CTAG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	129
TspRI	CASTG	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	32
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.