Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017500.1

Orthogroup ID

OG0005965

Physical Location & Seq

Genomic Coordinates Forward (+)

4479 .. 5413

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017500.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ctgactcgtggaagtgaaatttgctttcctcaggataagggtgtaccactgccaaagtttggtgaatgggacgtcaatgatccagcatcagcggaggggttcacagtaatcttcaacaaggctaggactgagaaaaaggctggtggcagacctgagtcaccatcaaaggatgactgcacatataagcatggagcagttctcggaaagcctcccactaaaaaatggttttgctgcttgcgtgcggaatcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AvrRpt-cleavage

Protein Analysis

83

Amino Acids

9.13

Weight (kDa)

8.76

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04410
fragaria_vesca	FvH4_6g40550
malus_domestica	MD09G1128500.v1.1 MD15G1247700.v1.1 MD15G1337200.v1.1 MD17G1117900.v1.1
prunus_persica	Prupe.3G196700_v2.0.a1 Prupe.3G196700_v2.0.a1
pyrus_communis	pycom17g10840
rosa_chinensis	RchiOBHm_Chr2g0155811 RchiOBHm_Chr6g0295941
rosa_laevigata	RLG00000011755
rosa_multiflora	Rmu_sc0000529.1_g000005 Rmu_sc0003417.1_g000011 Rmu_sc0016143.1_g000004 Rmu_sc0017500.1_g000002 Rmu_sc0017500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00172040
rosa_rugosa	Rorug02G0450000 Rorug02G0450000 Rorug06G0255200
rosa_samantha	Rh2AG516300 Rh2BG527200 Rh2CG501200 Rh2DG536200 Rh6BG376700
rosa_wichuraiana	Rw2G042460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccB7I	CCANNNNNTGG	1 cut(s)	59
AciI	CCGC	2 cut(s)	92, 242
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	115
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	74, 150
AxyI	CCTNAGG	1 cut(s)	30
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
BmsI	GCATC	1 cut(s)	95
BoxI	GACNNNNGTC	1 cut(s)	154
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BsaHI	GRCGYC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse21I	CCTNAGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	44, 120, 144
BseXI	GCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	92, 242
BspCNI	CTCAG	3 cut(s)	43, 121, 145
BspPI	GGATC	1 cut(s)	74
BssMI	GATC	1 cut(s)	79
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	236, 240
BstDEI	CTNAG	3 cut(s)	30, 129, 153
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstPAI	GACNNNNGTC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	236, 240
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	3 cut(s)	122, 140, 208
CviKI_1	RGCY	3 cut(s)	122, 140, 208
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	3 cut(s)	30, 129, 153
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco81I	CCTNAGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	191
FaiI	YATR	3 cut(s)	181, 183, 189
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	232
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	3 cut(s)	4, 155, 245
HphI	GGTGA	2 cut(s)	74, 150
Hpy166II	GTNNAC	2 cut(s)	44, 102
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	32, 249
Hpy8I	GTNNAC	2 cut(s)	44, 102
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	30, 129, 153
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	4 cut(s)	17, 96, 126, 165
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	3 cut(s)	39, 88, 219
MspA1I	CMGCKG	1 cut(s)	92
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PshAI	GACNNNNGTC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	164
SetI	ASST	2 cut(s)	75, 154
SfaNI	GCATC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	92, 242
SspMI	CTAG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	75
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	245
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	156
TspRI	CASTG	1 cut(s)	54
Van91I	CCANNNNNTGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	1 cut(s)	123
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.