Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006758

Physical Location & Seq

Genomic Coordinates Forward (+)

10708712 .. 10709166

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1123200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATATCAAGGAAAGCTTTCTCACCATTTGCATGCAGAGCAAAAGAAGCTCTTCAGGGAAGATTATTTGGAAATCCCCGGATACATATTTGCTTTGCAAAGAGTGAAACAGGCTCAGCAAACAGTGGAAGGAATTCAATGAATGTCCCTCCATCCCCACATTTTCAGGTGAATGGTCGCTCAGGATCATCTGAGTATTTTTGGGAGGACACGAAATTTGGGAGCTTCACAGGGAATCCCAGCATCAGATCCCCTCAGTATTTCCCAGATTTTGATGCTGGTGATTCCGATCCCTGTGGTTTTAAGAGGAAAGGGAATTTATGGAGAGGTGAAAGCGATACGTTTGAACAGAGGAGATACGGGGAAATGGGGTCTGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

128

Amino Acids

14.22

Weight (kDa)

8.91

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12640 AT4G12640 AT4G12640 AT4G12640
fragaria_vesca	FvH4_6g40190 FvH4_6g40190
malus_domestica	MD09G1134400.v1.1 MD17G1123200.v1.1 MD17G1123300.v1.1
prunus_persica	Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1
pyrus_communis	pycom09g05560 pycom17g11470
rosa_chinensis	RchiOBHm_Chr2g0155211
rosa_laevigata	RLG00000020826
rosa_multiflora	Rmu_co8185832.1_g000001 Rmu_sc0004976.1_g000040
rosa_roxburghii	Rroxscaffold_2G00093870
rosa_rugosa	Rorug02G0445900 Rorug02G0445900
rosa_samantha	Rh2AG512300 Rh2BG523000 Rh2CG497300 Rh2DG532700
rosa_wichuraiana	Rw2G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	193, 243, 284
AcsI	RAATTY	3 cut(s)	133, 215, 316
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	138, 347
AluBI	AGCT	3 cut(s)	17, 50, 225
AluI	AGCT	3 cut(s)	17, 50, 225
AlwI	GGATC	3 cut(s)	193, 243, 284
ApoI	RAATTY	3 cut(s)	133, 215, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp700I	GAANNNNTTC	3 cut(s)	17, 51, 133
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	4 cut(s)	15, 181, 293, 341
BccI	CCATC	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	252, 265
Bpu10I	CCTNAGC	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	152
BseJI	GATNNNNATC	1 cut(s)	288
BseMII	CTCAG	4 cut(s)	129, 183, 195, 269
BseRI	GAGGAG	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	185, 248, 289
Bsp1720I	GCTNAGC	1 cut(s)	115
BspCNI	CTCAG	4 cut(s)	128, 184, 194, 268
BspPI	GGATC	3 cut(s)	193, 243, 284
BspQI	GCTCTTC	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	3 cut(s)	185, 248, 289
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	115, 181, 192, 255
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	3 cut(s)	188, 251, 292
BstMBI	GATC	3 cut(s)	185, 248, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	34
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	4 cut(s)	17, 50, 114, 225
CviKI_1	RGCY	4 cut(s)	17, 50, 114, 225
DdeI	CTNAG	4 cut(s)	115, 181, 192, 255
DpnI	GATC	3 cut(s)	187, 250, 291
DpnII	GATC	3 cut(s)	185, 248, 289
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	1 cut(s)	36
FaiI	YATR	4 cut(s)	34, 87, 322, 382
FalI	AAGNNNNNCTT	3 cut(s)	33, 36, 68
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	32
FokI	GGATG	1 cut(s)	139
GsaI	CCCAGC	1 cut(s)	243
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	235, 284
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	4 cut(s)	15, 181, 293, 341
Hpy188I	TCNGA	4 cut(s)	193, 248, 289, 376
Hpy188III	TCNNGA	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	32, 36, 98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	4 cut(s)	115, 181, 192, 255
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	185, 248, 289
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	222
LweI	GCATC	2 cut(s)	252, 265
MaeII	ACGT	1 cut(s)	341
MalI	GATC	3 cut(s)	187, 250, 291
MboI	GATC	3 cut(s)	185, 248, 289
MboII	GAAGA	2 cut(s)	44, 72
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	3 cut(s)	133, 215, 316
MnlI	CCTC	6 cut(s)	159, 199, 264, 300, 320, 345
MroXI	GAANNNNTTC	3 cut(s)	17, 51, 133
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	31
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	185, 248, 289
NlaIII	CATG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	57
PdmI	GAANNNNTTC	3 cut(s)	17, 51, 133
PfeI	GAWTC	2 cut(s)	235, 284
PspFI	CCCAGC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	185, 248, 289
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	6 cut(s)	19, 52, 171, 227, 331, 344
SfaNI	GCATC	2 cut(s)	252, 265
SmiMI	CAYNNNNRTG	1 cut(s)	31
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	133, 215, 316
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	344
TasI	AATT	3 cut(s)	133, 215, 316
TfiI	GAWTC	2 cut(s)	235, 284
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	3 cut(s)	133, 215, 316
XceI	RCATGY	1 cut(s)	36
XmnI	GAANNNNTTC	3 cut(s)	17, 51, 133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.