Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006758

Physical Location & Seq

Genomic Coordinates Reverse (-)

68349816 .. 68358644

Gene Structure 8829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2259 bp

ATGGAGGCTCTTCAGGGCTTTCCTGTTGCAGGCAACCCGCTCAGGGTCGAGTTTACCAAGGCGGATAAATCATCAGTGCCATCACGTGAAGAAGACTACTCCCAACAACGTTCAGCAGTAAGAGGATCTCCTTTGTTGCAAAGGGAGTTTAGAGCACGCCAAGATACTCCTGAACAATTTTATCAAGAAAAATCCAGTATGGGTGATAAAAACACAGAGCCTAGTGAAGTATTATGGATAGGTTTTCCAGCTTTATTGAAGGTGGATGAATTTATATTAAGGAAGTCTTTTGCACCATTTGGTGAAATTGAGAAGATAACTGCCTTTCCTGGTCGTAGTTATGCGTTTGTGCGATTTAGGAGTGTAATGTCAGCTAGCAGAGCGAAAGCGGCTCTTCAAGGAAAATTATTTGGAAACCCCCGTGTACATATTTGTTTTGCAAGGAGCGACACCAGCTCATCAAACAGCGGAAGGAATTCAATCACTGACAGTCCATCCCCACATTTGAAGTTGAATGGTCGTTCTGGATCATCTGAGAACTTTCGACAAGATAGGAACTTTGGGAGCTTAACAGAGGATTTTAGCATCAGATCTCCTCAGTATTTCTCAACTTTGGATTCTGGTGGTTATGAGCCCTATAGTATAAAGAGGAAAGGAAATTTATGGACAGGTGAGAACAATACATTTGAACAGAGGAGGCCCGGTGAAGTATCTGATCTAGAACTCTCACAAGACATGTATGGTTATCGGGGTAGTCCTACGAGAGAGAAATATGCTCGTTTACATGATTATCCTCAAAGATTTCCTGAAACAAATCCCCCGTATGAAGAACCATGGGACTTACCAGATGACGTTAATTTCTTTCATGGAGCCAAGAAATTGAAGACAGAGTCTTACATTCCTGAGAAAGAGCTTCCAGAGTATCCAATGTCTGTATACGAACAAGAAAAACATGGTTTCCCTAGATTATTCACTGATTTTCACCAAGCTGACAATTCCAATAGAAACTTTGAGGCTGATCCATTTGGTTACAAACAAATCCCTGAACGACCAATGAATCTAGCTCGACCTCCAGTTGAGAGGGGTGACCCTTGGAAAGAATCTTATGGTAATTTGCAGGCGGGTTCTCAGCTACTAAGTTCTGTTGATAGGAAAAGATTCACTCCTGAACCAAAGAAGTCTTTGGAACTATGGAAATGGGAAGGGACTATAGCAAAGGGAGGAACTCCTGTCTGTCGTGCCCGTTGCTTTCCTGTGGGGAAGGTCCTTGACATTAACTTGCCTGAGTTTTTAGATTGTACTGCAAGGACTGGTCTAGATATGCTTTCTAAGCATTACGATCAAGCAACCAGTGCTTGGGTTGTGTTCTTTTCCCCTGGAAGTGATGCTGATATTGGATACTACAATGAATTTATGCATTATCTTGGGGAGAAGCAGCGAGCAGCCGTTGCTAAATTGGATGACAGGACCACCTTGTTTCTTGTACCCCCATCAGAGTTCTCAGAGAAAGTGCTGAAGGTACCTGGGAAAGTCAGCATCTCTGGTGTTGTTTTGAGGTTAGACCAGCCTAGTTCCAACTTTGGATCTTATCACCAGCAACATGAAAGAAATGATACTAGATTATTGTCATTTGCTGGCGACCCACCATATTCGAATTGCCAACACCTTCAGTATCCATTCCTCCGTTTACATCTTTGCCTGATTCAAGTAAATCAGGAGTTAGCAATCTATCTTCCTTGGGGAACTTTTCATCAATTCCACCAGCTTCATTTTCTGGTTCAGCTCATGGTGTTGGAAATGGATATGAACCTTACAATGAGAACAGGCATGAGTATCCACTTCATAAGGAAAGCCCTATGTTGGGACCAAACTGGTCTTCTCACCACCCACAGAATTCAGTTTCTGTTGCTAGAAATAGACCCAACCAAGTGTCCAATAATACTGTTGATCCAGTTCTTCAGGAGCATCCCTTGGTCATTCAAAGGCCCCTGCAAGAGGCAATCCCTACTGGTGGAATGCCTCGTGTTCAAAACAGCAATTTCCAGGACACCCAGCCTTCGGTTTCTTTACCTACGCCTCTTGCAGCCCTGCAACCGGAGCAACTTGCCCAATTGGCATCTCTTCTTGGACAGCAGAGTCAGTCTGGGAGCATTCCAAATCCATCCACCAGAGAAGATTTTAGGCTCAGAAATGCAGTACATGAAACTGAGAACCTGCCAAGGACATACCAGAAATTTGCGCAGCAGAATAATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

752

Amino Acids

86.57

Weight (kDa)

8.95

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	93 - 141	2e-07	RNA recognition motif
SPOC	PF07744	397 - 517	1.1e-24	SPOC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12640 AT4G12640 AT4G12640 AT4G12640
fragaria_vesca	FvH4_6g40190 FvH4_6g40190
malus_domestica	MD09G1134400.v1.1 MD17G1123200.v1.1 MD17G1123300.v1.1
prunus_persica	Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1
pyrus_communis	pycom09g05560 pycom17g11470
rosa_chinensis	RchiOBHm_Chr2g0155211
rosa_laevigata	RLG00000020826
rosa_multiflora	Rmu_co8185832.1_g000001 Rmu_sc0004976.1_g000040
rosa_roxburghii	Rroxscaffold_2G00093870
rosa_rugosa	Rorug02G0445900 Rorug02G0445900
rosa_samantha	Rh2AG512300 Rh2BG523000 Rh2CG497300 Rh2DG532700
rosa_wichuraiana	Rw2G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2135
Acc16I	TGCGCA	1 cut(s)	2240
Acc36I	ACCTGC	1 cut(s)	2222
Acc65I	GGTACC	1 cut(s)	1519
AccB1I	GGYRCC	1 cut(s)	1519
AccB7I	CCANNNNNTGG	1 cut(s)	1356
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	936
AciI	CCGC	5 cut(s)	38, 62, 389, 468, 1121
AclI	AACGTT	1 cut(s)	109
AclWI	GGATC	5 cut(s)	133, 535, 1013, 1591, 1942
AcsI	RAATTY	6 cut(s)	269, 475, 658, 1409, 1893, 2233
AcuI	CTGAAG	3 cut(s)	1535, 1652, 1942
AcvI	CACGTG	1 cut(s)	86
AfaI	GTAC	5 cut(s)	426, 1300, 1485, 1521, 2198
AfiI	CCNNNNNNNGG	9 cut(s)	29, 43, 1356, 1860, 1861, 1995, 2011, 2058, 2094
AflIII	ACRYGT	1 cut(s)	735
AjnI	CCWGG	4 cut(s)	328, 1375, 1522, 2042
AjuI	GAANNNNNNNTTGG	2 cut(s)	1860, 1892
Alw21I	GWGCWC	1 cut(s)	157
AlwI	GGATC	5 cut(s)	133, 535, 1013, 1591, 1942
AlwNI	CAGNNNCTG	1 cut(s)	1903
AoxI	GGCC	2 cut(s)	698, 1984
ApeKI	GCWGC	4 cut(s)	1435, 1442, 2083, 2241
ApoI	RAATTY	6 cut(s)	269, 475, 658, 1409, 1893, 2233
Asp700I	GAANNNNTTC	2 cut(s)	475, 1157
Asp718I	GGTACC	1 cut(s)	1519
AspLEI	GCGC	1 cut(s)	2241
AspS9I	GGNCC	5 cut(s)	699, 1264, 1467, 1864, 1985
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	8 cut(s)	215, 314, 683, 716, 974, 1097, 1583, 1873
AsuII	TTCGAA	1 cut(s)	1652
AsuNHI	GCTAGC	1 cut(s)	374
AvaII	GGWCC	3 cut(s)	1264, 1467, 1864
BaeGI	GKGCMC	1 cut(s)	1243
BanI	GGYRCC	1 cut(s)	1519
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	2021
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	3 cut(s)	99, 890, 1868
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	4 cut(s)	1447, 1454, 2095, 2253
BccI	CCATC	4 cut(s)	88, 502, 1498, 2169
BceAI	ACGGC	1 cut(s)	1430
BciT130I	CCWGG	4 cut(s)	330, 1377, 1524, 2044
BciVI	GTATCC	4 cut(s)	933, 1391, 1683, 1844
BcnI	CCSGG	1 cut(s)	702
BfaI	CTAG	9 cut(s)	222, 375, 719, 963, 1061, 1316, 1569, 1617, 1910
BfmI	CTRYAG	2 cut(s)	637, 1209
BfuAI	ACCTGC	1 cut(s)	2222
BfuI	GTATCC	4 cut(s)	933, 1391, 1683, 1844
BglI	GCCNNNNNGGC	1 cut(s)	2113
BglII	AGATCT	1 cut(s)	590
BisI	GCNGC	5 cut(s)	390, 1436, 1443, 2084, 2242
BlsI	GCNGC	5 cut(s)	391, 1437, 1444, 2085, 2243
Bme1390I	CCNGG	5 cut(s)	330, 702, 1377, 1524, 2044
Bme18I	GGWCC	3 cut(s)	1264, 1467, 1864
BmgT120I	GGNCC	5 cut(s)	699, 1264, 1467, 1864, 1985
BmiI	GGNNCC	4 cut(s)	871, 1521, 1865, 1987
BmrFI	CCNGG	5 cut(s)	330, 702, 1377, 1524, 2044
BmsI	GCATC	5 cut(s)	594, 1375, 1545, 1974, 2125
BmtI	GCTAGC	1 cut(s)	378
BpiI	GAAGAC	3 cut(s)	99, 890, 1868
BpmI	CTGGAG	1 cut(s)	1056
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	1652
BpuMI	CCSGG	1 cut(s)	702
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	8 cut(s)	57, 833, 1091, 1375, 1523, 1736, 1970, 2218
BsaWI	WCCGGW	1 cut(s)	2094
BsaXI	ACNNNNNCTCC	2 cut(s)	688, 718
Bsc4I	CCNNNNNNNGG	9 cut(s)	29, 43, 1356, 1860, 1861, 1995, 2011, 2058, 2094
Bse1I	ACTGG	7 cut(s)	195, 1073, 1315, 1350, 1876, 1951, 2013
BseBI	CCWGG	4 cut(s)	330, 1377, 1524, 2044
BseDI	CCNNGG	8 cut(s)	57, 833, 1091, 1375, 1523, 1736, 1970, 2218
BseGI	GGATG	5 cut(s)	271, 494, 1465, 1965, 2161
BseLI	CCNNNNNNNGG	9 cut(s)	29, 43, 1356, 1860, 1861, 1995, 2011, 2058, 2094
BseMII	CTCAG	9 cut(s)	55, 525, 611, 894, 1142, 1275, 1515, 2198, 2199
BseNI	ACTGG	7 cut(s)	195, 1073, 1315, 1350, 1876, 1951, 2013
BseRI	GAGGAG	2 cut(s)	585, 709
BseSI	GKGCMC	1 cut(s)	1243
BseXI	GCAGC	4 cut(s)	1447, 1454, 2095, 2253
BseYI	CCCAGC	1 cut(s)	2051
BshFI	GGCC	2 cut(s)	700, 1986
BshNI	GGYRCC	1 cut(s)	1519
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	702, 2095
BslFI	GGGAC	3 cut(s)	851, 1219, 1877
BslI	CCNNNNNNNGG	9 cut(s)	29, 43, 1356, 1860, 1861, 1995, 2011, 2058, 2094
BsmFI	GGGAC	3 cut(s)	851, 1219, 1877
BsmI	GAATGC	2 cut(s)	2021, 2150
BsnI	GGCC	2 cut(s)	700, 1986
Bsp119I	TTCGAA	1 cut(s)	1652
Bsp1286I	GDGCHC	3 cut(s)	157, 636, 1243
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
Bsp19I	CCATGG	1 cut(s)	833
BspACI	CCGC	5 cut(s)	38, 62, 389, 468, 1121
BspANI	GGCC	2 cut(s)	700, 1986
BspCNI	CTCAG	9 cut(s)	54, 526, 610, 895, 1141, 1276, 1514, 2198, 2199
BspLI	GGNNCC	4 cut(s)	871, 1521, 1865, 1987
BspMI	ACCTGC	1 cut(s)	2222
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	5 cut(s)	133, 535, 1013, 1591, 1942
BspQI	GCTCTTC	2 cut(s)	15, 399
BspT104I	TTCGAA	1 cut(s)	1652
BspT107I	GGYRCC	1 cut(s)	1519
BsrBI	CCGCTC	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	7 cut(s)	195, 1073, 1315, 1350, 1876, 1951, 2013
BssECI	CCNNGG	8 cut(s)	57, 833, 1091, 1375, 1523, 1736, 1970, 2218
BssMI	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
BssNAI	GTATAC	1 cut(s)	937
BssSI	CACGAG	1 cut(s)	2021
BssT1I	CCWWGG	6 cut(s)	57, 833, 1091, 1736, 1970, 2218
Bst1107I	GTATAC	1 cut(s)	937
Bst2BI	CACGAG	1 cut(s)	2021
Bst2UI	CCWGG	4 cut(s)	330, 1377, 1524, 2044
Bst4CI	ACNGT	2 cut(s)	491, 1944
Bst6I	CTCTTC	3 cut(s)	15, 399, 2126
BstAPI	GCANNNNNTGC	2 cut(s)	1352, 1448
BstAUI	TGTACA	1 cut(s)	424
BstBAI	YACGTR	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	1652
BstC8I	GCNNGC	6 cut(s)	31, 157, 376, 1119, 1440, 1636
BstDSI	CCRYGG	1 cut(s)	833
BstEII	GGTNACC	1 cut(s)	1085
BstENI	CCTNNNNNAGG	2 cut(s)	27, 1993
BstF5I	GGATG	5 cut(s)	271, 494, 1465, 1965, 2161
BstHHI	GCGC	1 cut(s)	2241
BstKTI	GATC	8 cut(s)	128, 530, 593, 718, 1021, 1342, 1586, 1950
BstMBI	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
BstMWI	GCNNNNNNNGC	8 cut(s)	380, 389, 453, 1330, 1352, 1448, 2097, 2113
BstNI	CCWGG	4 cut(s)	330, 1377, 1524, 2044
BstNSI	RCATGY	1 cut(s)	739
BstPI	GGTNACC	1 cut(s)	1085
BstSCI	CCNGG	5 cut(s)	328, 700, 1375, 1522, 2042
BstSFI	CTRYAG	2 cut(s)	637, 1209
BstSLI	GKGCMC	1 cut(s)	1243
BstV1I	GCAGC	4 cut(s)	1447, 1454, 2095, 2253
BstV2I	GAAGAC	3 cut(s)	99, 890, 1868
BstX2I	RGATCY	3 cut(s)	125, 590, 1583
BstYI	RGATCY	3 cut(s)	125, 590, 1583
BstZ17I	GTATAC	1 cut(s)	937
BsuI	GTATCC	4 cut(s)	933, 1391, 1683, 1844
BsuRI	GGCC	2 cut(s)	700, 1986
BtgI	CCRYGG	1 cut(s)	833
BtsCI	GGATG	5 cut(s)	271, 494, 1465, 1965, 2161
BtsIMutI	CAGTG	4 cut(s)	81, 483, 972, 1357
BveI	ACCTGC	1 cut(s)	2222
Cac8I	GCNNGC	6 cut(s)	31, 157, 376, 1119, 1440, 1636
CaiI	CAGNNNCTG	1 cut(s)	1903
CfoI	GCGC	1 cut(s)	2241
Cfr13I	GGNCC	5 cut(s)	699, 1264, 1467, 1864, 1985
Csp6I	GTAC	5 cut(s)	425, 1299, 1484, 1520, 2197
CviAII	CATG	9 cut(s)	736, 785, 834, 866, 953, 1601, 1786, 1828, 2200
CviQI	GTAC	5 cut(s)	425, 1299, 1484, 1520, 2197
DpnI	GATC	8 cut(s)	127, 529, 592, 717, 1020, 1341, 1585, 1949
DpnII	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
DrdI	GACNNNNNNGTC	1 cut(s)	2135
DseDI	GACNNNNNNGTC	1 cut(s)	2135
Eam1104I	CTCTTC	3 cut(s)	15, 399, 2126
EarI	CTCTTC	3 cut(s)	15, 399, 2126
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	6 cut(s)	57, 833, 1091, 1736, 1970, 2218
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	3 cut(s)	1264, 1467, 1864
Eco57I	CTGAAG	3 cut(s)	1535, 1652, 1942
Eco72I	CACGTG	1 cut(s)	86
Eco91I	GGTNACC	1 cut(s)	1085
EcoNI	CCTNNNNNAGG	2 cut(s)	27, 1993
EcoO109I	RGGNCCY	2 cut(s)	1264, 1985
EcoO65I	GGTNACC	1 cut(s)	1085
EcoRI	GAATTC	2 cut(s)	475, 1893
EcoRII	CCWGG	4 cut(s)	328, 1375, 1522, 2042
EcoT14I	CCWWGG	6 cut(s)	57, 833, 1091, 1736, 1970, 2218
EcoT22I	ATGCAT	1 cut(s)	1419
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	6 cut(s)	57, 833, 1091, 1736, 1970, 2218
FaeI	CATG	9 cut(s)	739, 788, 837, 869, 956, 1604, 1789, 1831, 2203
FalI	AAGNNNNNCTT	4 cut(s)	271, 303, 378, 410
FaqI	GGGAC	3 cut(s)	851, 1219, 1877
FatI	CATG	9 cut(s)	735, 784, 833, 865, 952, 1600, 1785, 1827, 2199
FauI	CCCGC	2 cut(s)	45, 1114
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	5 cut(s)	390, 1436, 1443, 2084, 2242
FokI	GGATG	5 cut(s)	278, 481, 1472, 1952, 2148
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	5 cut(s)	390, 1436, 1443, 2084, 2242
FspBI	CTAG	9 cut(s)	222, 375, 719, 963, 1061, 1316, 1569, 1617, 1910
FspI	TGCGCA	1 cut(s)	2240
GlaI	GCGC	1 cut(s)	2240
GluI	GCNGC	5 cut(s)	390, 1436, 1443, 2084, 2242
GsaI	CCCAGC	1 cut(s)	2055
GsuI	CTGGAG	1 cut(s)	1056
HaeIII	GGCC	2 cut(s)	700, 1986
HapII	CCGG	2 cut(s)	702, 2095
HhaI	GCGC	1 cut(s)	2241
Hin1II	CATG	9 cut(s)	739, 788, 837, 869, 956, 1604, 1789, 1831, 2203
Hin6I	GCGC	1 cut(s)	2239
HinP1I	GCGC	1 cut(s)	2239
HinfI	GANTC	7 cut(s)	617, 890, 1057, 1100, 1158, 1702, 2136
HpaII	CCGG	2 cut(s)	702, 2095
HphI	GGTGA	8 cut(s)	215, 314, 683, 716, 974, 1097, 1583, 1873
Hpy166II	GTNNAC	5 cut(s)	54, 425, 782, 937, 1688
Hpy188I	TCNGA	6 cut(s)	535, 590, 715, 1495, 1504, 2188
Hpy8I	GTNNAC	5 cut(s)	54, 425, 782, 937, 1688
HpyAV	CCTTC	7 cut(s)	253, 465, 1196, 1255, 1510, 1676, 2066
HpyCH4III	ACNGT	2 cut(s)	491, 1944
HpyCH4IV	ACGT	3 cut(s)	85, 109, 852
HpyF10VI	GCNNNNNNNGC	8 cut(s)	380, 389, 453, 1330, 1352, 1448, 2097, 2113
HpySE526I	ACGT	3 cut(s)	85, 109, 852
Hsp92II	CATG	9 cut(s)	739, 788, 837, 869, 956, 1604, 1789, 1831, 2203
HspAI	GCGC	1 cut(s)	2239
KpnI	GGTACC	1 cut(s)	1523
Kzo9I	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
LguI	GCTCTTC	2 cut(s)	15, 399
LmnI	GCTCC	6 cut(s)	444, 564, 869, 1962, 2097, 2147
Lsp1109I	GCAGC	4 cut(s)	1447, 1454, 2095, 2253
LweI	GCATC	5 cut(s)	594, 1375, 1545, 1974, 2125
MaeI	CTAG	9 cut(s)	222, 375, 719, 963, 1061, 1316, 1569, 1617, 1910
MaeII	ACGT	3 cut(s)	85, 109, 852
MaeIII	GTNAC	2 cut(s)	1028, 1085
MalI	GATC	8 cut(s)	127, 529, 592, 717, 1020, 1341, 1585, 1949
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
MfeI	CAATTG	1 cut(s)	2110
MflI	RGATCY	3 cut(s)	125, 590, 1583
MhlI	GDGCHC	3 cut(s)	157, 636, 1243
MlyI	GAGTC	2 cut(s)	899, 2145
MmeI	TCCRAC	2 cut(s)	1599, 1773
Mph1103I	ATGCAT	1 cut(s)	1419
MroXI	GAANNNNTTC	2 cut(s)	475, 1157
MseI	TTAA	4 cut(s)	278, 569, 855, 1275
MspA1I	CMGCKG	1 cut(s)	468
MspI	CCGG	2 cut(s)	702, 2095
MspR9I	CCNGG	5 cut(s)	330, 702, 1377, 1524, 2044
MunI	CAATTG	1 cut(s)	2110
Mva1269I	GAATGC	2 cut(s)	2021, 2150
MvaI	CCWGG	4 cut(s)	330, 1377, 1524, 2044
MwoI	GCNNNNNNNGC	8 cut(s)	380, 389, 453, 1330, 1352, 1448, 2097, 2113
NciI	CCSGG	1 cut(s)	702
NcoI	CCATGG	1 cut(s)	833
NdeII	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	9 cut(s)	739, 788, 837, 869, 956, 1604, 1789, 1831, 2203
NlaIV	GGNNCC	4 cut(s)	871, 1521, 1865, 1987
NmuCI	GTSAC	1 cut(s)	1085
NsbI	TGCGCA	1 cut(s)	2240
NsiI	ATGCAT	1 cut(s)	1419
NspI	RCATGY	1 cut(s)	739
NspV	TTCGAA	1 cut(s)	1652
PciI	ACATGT	1 cut(s)	735
PciSI	GCTCTTC	2 cut(s)	15, 399
PctI	GAATGC	2 cut(s)	2021, 2150
PdmI	GAANNNNTTC	2 cut(s)	475, 1157
PfeI	GAWTC	5 cut(s)	617, 1057, 1100, 1158, 1702
PflFI	GACNNNGTC	1 cut(s)	889
PflMI	CCANNNNNTGG	1 cut(s)	1356
PfoI	TCCNGGA	1 cut(s)	2042
PkrI	GCNGC	5 cut(s)	391, 1437, 1444, 2085, 2243
PleI	GAGTC	2 cut(s)	898, 2144
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	2 cut(s)	898, 2144
Ppu21I	YACGTR	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	1264
PscI	ACATGT	1 cut(s)	735
Psp1406I	AACGTT	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	1264
Psp6I	CCWGG	4 cut(s)	328, 1375, 1522, 2042
PspCI	CACGTG	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	1085
PspFI	CCCAGC	1 cut(s)	2051
PspGI	CCWGG	4 cut(s)	328, 1375, 1522, 2042
PspN4I	GGNNCC	4 cut(s)	871, 1521, 1865, 1987
PspPI	GGNCC	5 cut(s)	699, 1264, 1467, 1864, 1985
PspPPI	RGGWCCY	1 cut(s)	1264
PstNI	CAGNNNCTG	1 cut(s)	1903
PsuI	RGATCY	3 cut(s)	125, 590, 1583
PsyI	GACNNNGTC	1 cut(s)	889
RsaI	GTAC	5 cut(s)	426, 1300, 1485, 1521, 2198
RsaNI	GTAC	5 cut(s)	425, 1299, 1484, 1520, 2197
SapI	GCTCTTC	2 cut(s)	15, 399
SaqAI	TTAA	4 cut(s)	278, 569, 855, 1275
SatI	GCNGC	5 cut(s)	390, 1436, 1443, 2084, 2242
Sau3AI	GATC	8 cut(s)	125, 527, 590, 715, 1018, 1339, 1583, 1947
Sau96I	GGNCC	5 cut(s)	699, 1264, 1467, 1864, 1985
SchI	GAGTC	2 cut(s)	899, 2145
ScrFI	CCNGG	5 cut(s)	330, 702, 1377, 1524, 2044
SduI	GDGCHC	3 cut(s)	157, 636, 1243
SfaNI	GCATC	5 cut(s)	594, 1375, 1545, 1974, 2125
SfcI	CTRYAG	2 cut(s)	637, 1209
SfuI	TTCGAA	1 cut(s)	1652
SinI	GGWCC	3 cut(s)	1264, 1467, 1864
SsiI	CCGC	5 cut(s)	38, 62, 389, 468, 1121
SspMI	CTAG	9 cut(s)	222, 375, 719, 963, 1061, 1316, 1569, 1617, 1910
StyD4I	CCNGG	5 cut(s)	328, 700, 1375, 1522, 2042
StyI	CCWWGG	6 cut(s)	57, 833, 1091, 1736, 1970, 2218
TaaI	ACNGT	2 cut(s)	491, 1944
TaiI	ACGT	3 cut(s)	88, 112, 855
TaqI	TCGA	4 cut(s)	48, 544, 1066, 1652
TatI	WGTACW	3 cut(s)	424, 1298, 2196
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	5 cut(s)	617, 1057, 1100, 1158, 1702
Tru1I	TTAA	4 cut(s)	278, 569, 855, 1275
Tru9I	TTAA	4 cut(s)	278, 569, 855, 1275
TscAI	CASTG	4 cut(s)	81, 490, 979, 1357
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	4 cut(s)	1435, 1442, 2083, 2241
Tsp45I	GTSAC	1 cut(s)	1085
TspGWI	ACGGA	1 cut(s)	1673
TspRI	CASTG	4 cut(s)	81, 490, 979, 1357
Tth111I	GACNNNGTC	1 cut(s)	889
Van91I	CCANNNNNTGG	1 cut(s)	1356
VpaK11BI	GGWCC	3 cut(s)	1264, 1467, 1864
XagI	CCTNNNNNAGG	2 cut(s)	27, 1993
XapI	RAATTY	6 cut(s)	269, 475, 658, 1409, 1893, 2233
XbaI	TCTAGA	2 cut(s)	718, 1315
XceI	RCATGY	1 cut(s)	739
XmiI	GTMKAC	1 cut(s)	936
XmnI	GAANNNNTTC	2 cut(s)	475, 1157
XspI	CTAG	9 cut(s)	222, 375, 719, 963, 1061, 1316, 1569, 1617, 1910
Zsp2I	ATGCAT	1 cut(s)	1419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.