Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8185832.1

Orthogroup ID

OG0006758

Physical Location & Seq

Genomic Coordinates Forward (+)

35 .. 670

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8185832.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgttgggaccaaactggtcttctcaccacccacagaattcagtttctgttgctagaaatagacccaaccaagtgtccaataatactgttgatccagttcttcaggagcatccctcggtcattcaaaggcccctgcaagaggcaatccctactggtggaatgcctcgtgttcaaaacagcaatttccaggacacccagccttcggtttctttacctacgcctcttgcagccctgcaaccggagcaacttgcccaattggcatctcttcttggacagcagagtcagtctgggagcattccaaatccatccaccagagaagattttaggctcagaaatgcagtacatgaaactgagaacctgccaaggacataccagaaatttgcgcagcagaataatcaggtgacttctgagcccacgacatctcagtttggtcaagctcaagagttgcagcagccgcaacagcagatatcacatgtgcctcaaatggttcaaagagatgttcaagcagggggtcgggggaatcaacatctgcaaaatatcaatacaaatgaaggtggagaaacagatcgcatgcaagcgacattacagcttgcagcagctctacttcagaaaatccaacaagggaaaggaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

211

Amino Acids

23.2

Weight (kDa)

6.59

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12640 AT4G12640 AT4G12640 AT4G12640
fragaria_vesca	FvH4_6g40190 FvH4_6g40190
malus_domestica	MD09G1134400.v1.1 MD17G1123200.v1.1 MD17G1123300.v1.1
prunus_persica	Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1
pyrus_communis	pycom09g05560 pycom17g11470
rosa_chinensis	RchiOBHm_Chr2g0155211
rosa_laevigata	RLG00000020826
rosa_multiflora	Rmu_co8185832.1_g000001 Rmu_sc0004976.1_g000040
rosa_roxburghii	Rroxscaffold_2G00093870
rosa_rugosa	Rorug02G0445900 Rorug02G0445900
rosa_samantha	Rh2AG512300 Rh2BG523000 Rh2CG497300 Rh2DG532700
rosa_wichuraiana	Rw2G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	384
Acc36I	ACCTGC	1 cut(s)	366
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	37, 377
AcuI	CTGAAG	2 cut(s)	86, 590
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	4 cut(s)	139, 155, 202, 238
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	4 cut(s)	125, 173, 491, 503
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	437, 589, 599
AluI	AGCT	3 cut(s)	437, 589, 599
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	6 cut(s)	227, 385, 448, 451, 593, 596
ApoI	RAATTY	2 cut(s)	37, 377
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	8, 129
AsuHPI	GGTGA	2 cut(s)	17, 412
AvaII	GGWCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	414
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	6 cut(s)	239, 397, 460, 463, 605, 608
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	188
BfaI	CTAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	257
BisI	GCNGC	7 cut(s)	228, 386, 449, 452, 455, 594, 597
BlsI	GCNGC	7 cut(s)	229, 387, 450, 453, 456, 595, 598
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	8, 129
BmiI	GGNNCC	2 cut(s)	9, 131
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	118, 269
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpuEI	CTTGAG	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	114, 362
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 155, 202, 238
Bse1I	ACTGG	3 cut(s)	20, 95, 157
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	114, 362
BseGI	GGATG	2 cut(s)	109, 305
BseLI	CCNNNNNNNGG	4 cut(s)	139, 155, 202, 238
BseMII	CTCAG	4 cut(s)	342, 343, 399, 437
BseNI	ACTGG	3 cut(s)	20, 95, 157
BseXI	GCAGC	6 cut(s)	239, 397, 460, 463, 605, 608
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	4 cut(s)	139, 155, 202, 238
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	2 cut(s)	165, 294
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	91, 565
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	4 cut(s)	342, 343, 400, 436
BspLI	GGNNCC	2 cut(s)	9, 131
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	20, 95, 157
BssECI	CCNNGG	2 cut(s)	114, 362
BssMI	GATC	2 cut(s)	91, 565
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	572, 576, 591
BstDEI	CTNAG	4 cut(s)	329, 351, 408, 423
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	109, 305
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	94, 568
BstMBI	GATC	2 cut(s)	91, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 257, 454, 460
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	2 cut(s)	476, 574
BstSCI	CCNGG	1 cut(s)	186
BstV1I	GCAGC	6 cut(s)	239, 397, 460, 463, 605, 608
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	109, 305
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	3 cut(s)	572, 576, 591
CaiI	CAGNNNCTG	1 cut(s)	47
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	8, 129
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	3 cut(s)	344, 473, 571
CviJI	RGCY	9 cut(s)	130, 199, 230, 328, 412, 437, 454, 589, 599
CviKI_1	RGCY	9 cut(s)	130, 199, 230, 328, 412, 437, 454, 589, 599
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	4 cut(s)	329, 351, 408, 423
DpnI	GATC	2 cut(s)	93, 567
DpnII	GATC	2 cut(s)	91, 565
DrdI	GACNNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	2 cut(s)	86, 590
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	3 cut(s)	347, 476, 574
FaiI	YATR	4 cut(s)	345, 370, 474, 572
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	343, 472, 570
Fnu4HI	GCNGC	7 cut(s)	228, 386, 449, 452, 455, 594, 597
FokI	GGATG	2 cut(s)	96, 292
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	7 cut(s)	228, 386, 449, 452, 455, 594, 597
FspBI	CTAG	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	384
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	7 cut(s)	228, 386, 449, 452, 455, 594, 597
GsaI	CCCAGC	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	3 cut(s)	347, 476, 574
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	2 cut(s)	280, 520
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	17, 412
Hpy188I	TCNGA	3 cut(s)	332, 409, 609
Hpy188III	TCNNGA	2 cut(s)	104, 440
HpyAV	CCTTC	2 cut(s)	210, 545
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	8 cut(s)	136, 227, 235, 338, 448, 532, 574, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 257, 454, 460
HpyF3I	CTNAG	4 cut(s)	329, 351, 408, 423
Hsp92II	CATG	3 cut(s)	347, 476, 574
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	91, 565
LmnI	GCTCC	3 cut(s)	106, 241, 291
Lsp1109I	GCAGC	6 cut(s)	239, 397, 460, 463, 605, 608
LweI	GCATC	2 cut(s)	118, 269
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	93, 567
MboI	GATC	2 cut(s)	91, 565
MboII	GAAGA	4 cut(s)	12, 92, 257, 329
MfeI	CAATTG	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	4 cut(s)	37, 181, 254, 377
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	124, 133, 174, 231, 489
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	2 cut(s)	165, 294
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	241, 257, 454, 460
NdeII	GATC	2 cut(s)	91, 565
NlaIII	CATG	3 cut(s)	347, 476, 574
NlaIV	GGNNCC	2 cut(s)	9, 131
NmuCI	GTSAC	1 cut(s)	400
NsbI	TGCGCA	1 cut(s)	384
NspI	RCATGY	2 cut(s)	476, 574
PaeI	GCATGC	1 cut(s)	574
PciI	ACATGT	1 cut(s)	472
PctI	GAATGC	2 cut(s)	165, 294
PfeI	GAWTC	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	7 cut(s)	229, 387, 450, 453, 456, 595, 598
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PscI	ACATGT	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	9, 131
PspPI	GGNCC	2 cut(s)	8, 129
PstNI	CAGNNNCTG	1 cut(s)	47
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SatI	GCNGC	7 cut(s)	228, 386, 449, 452, 455, 594, 597
Sau3AI	GATC	2 cut(s)	91, 565
Sau96I	GGNCC	2 cut(s)	8, 129
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	7 cut(s)	217, 360, 402, 439, 556, 591, 601
SfaNI	GCATC	2 cut(s)	118, 269
SinI	GGWCC	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	4 cut(s)	37, 181, 254, 377
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	88
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	37, 181, 254, 377
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	6 cut(s)	227, 385, 448, 451, 593, 596
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	360, 564
VpaK11BI	GGWCC	1 cut(s)	8
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	2 cut(s)	37, 377
XceI	RCATGY	2 cut(s)	476, 574
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.