Rh2BG523000

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006758
Physical Location & Seq
Reverse (-)
73337885 .. 73346351
8467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG523000.1

Sequence Viewer

Length: 2736 bp
ATGGCGGGTCGGGGCGGAGGACGCGACAGGCTGAGCGGCGGAACGCGGCGTTTTGACGGCAAAGGCGGCAGCAAGGCGCCGCCGTCGAGACACTTGTGGATCGGGAATCTCTCTCACAGTATCACCGAGGACGACCTGACACGTCACTTTTTGCAGTTCGGAGACCTGGAAAGCGTGGCGTTCCAGCCCGGCCGGAGCTACGCCTTCATCAATTTTAACAGGGAGGATGACGCAATCGCCGCCATGGAGGCTCTTCAGGGCTTCCCTGTTGCAGGCAACCCGCTCAGGGTCGAGTTTACCAAGGCGGATAAATCATCAGTGCCATCACGTGAAGAAGACTACTCCCAACAACGTTCAGCAGTAAGAGGATCTCCTTTGTTGCAAAGGGAGTTTAGAGCACGCCAAGATACTCCTGAACAATTTTATCAAGAAAAATCCAGTATGGGTGATAAAAACACAGAGCCTAGTGAAGTATTATGGATAGGTTTTCCAGCTTTATTGAAGGTGGATGAATTTATATTAAGGAAGTCTTTTGCACCATTTGGTGAAATTGAGAAGATAACTGCCTTTCCTGGTCGTAGTTATGCGTTTGTGCGATTTAGGAGTGTAATGTCAGCTAGCAGAGCGAAAGCGGCTCTTCAAGGAAAATTATTTGGAAACCCCCGTGTACATATTTGTTTTGCAAGGAGCGACACCAGCTCATCAAACAGTGGAAGGAATTCAATCACTGACACTCCATCCCCACATTTGAAGTTGAATGGTCGTTCTGGATCATCTGAGAACTTTCGACAAGATAGGAACTTTGGGAGCTTAACAGAGGATTTTAGCATCAGATCTCCTCAGTATTTCTCAACTTTGGATTCTGGTGGTTATGAGCCCTATAGTATAAAGAGGAAAGGAAATTTATGGACAGGTGAGAACAATACATTTGAACAGAGGAGGCCCGGTGAAGTATCTGATCTAGAACTCTCACAAGACATGTATGGTTATCGGGGTAGTCCTACGAGAGAGAAATATGCTCGTTTACATGATTATCCTCAAAGATTTCCTGAAACAAATCCCCCGTATGAAGAACCATGGGACTTACCAGATGACGTTAATTTCTTTCATGGAGCCAAGAAATTGAAGACAGAGTCTTACATTCCTGAGAAAGAGCTTCCAGAGTATCCAATGTCTGTATACGAACAAGAAAAACATGGTTTCCCTAGATTATTCACTGATTTTCACCAAGCTGACAATTCCAATAGAAACTTTGAGGCTGATCCATTTGGTTACAAACAAATCCCTGAACGACCAATGAATCTAGCTCGACCTCCAGTTGAGAGGGGTGACCCTTGGAAAGAATCTTATGGTAATTTGCAGGCGGGTTCTCAGCTACTAAGTTCTGTTGATAGGAAAAGATTCACTCCTGAACCAAAGAAGTCTTTGGAACTATGGAAATGGGAAGGGACTATAGCAAAGGGAGGAACTCCTGTCTGTCGTGCCCGTTGCTTTCCTGTGGGGAAGGTCCTTGACATTAACTTGCCTGAGTTTTTAGATTGTACTGCAAGGACTGGTCTAGATATGCTTTCTAAGCATTACGATCAAGCAACCAGTGCTTGGGTTGTGTTCTTTTCCCCTGGAAGTGATGCTGATATTGGATACTACAATGAATTTATGCATTATCTTGGGGAGAAGCAGCGAGCAGCCGTTGCTAAATTGGATGACAGGACCACCTTGTTTCTTGTACCCCCATCAGAGTTCTCAGAGAAAGTGCTGAAGGTACCTGGGAAAGTCAGCATCTCTGGTGTTGTTTTGAGGTTAGACCAGCCTAGTTCCAACTTTGGATCTTATCACCAGCAACATGAAAGAAATGATACTAGATTATTGTCATTTGCTGGCGACCCACCATATTCGAAATTGCCAACACCTTCAGTATCCATTCCTCCGTTTACATCTTTGCCTGATTCAAGTAAATCAGGAGTTAGCAATCTATCTTCCTTGGGGAACTTTTCATCAATTCGACCAGCTTCATTTTCTGGTTCAGCTCATGGTGTTGGAAATGGATATGAACCTTACAATGAGAACAGGCATGAGTATCCACTTCATAAGGAAAGCCCTATGTTGGGACCAAACTGGTCTTCTCACCACCCACAGAATTCAGTTTCTGTTGCTAGAAATAGACCCAACCAAGTGTCCAATAATACTGTTGATCCAGTTCTTCAGGAGCATCCCTCGGTCATTCAAAGGCCCCTGCAAGAGGCAATCCCTACTGGTGGAATGCCTCGTGTTCAAAACAGCAATTTCCAGGACACCCAGCCTTCGGTTTCTTTACCTACGCCTCTTGCAGCCCTGCAACCGGAGCAACTTGCCCAATTGGCATCTCTTCTTGGACAGCAGAGTCAGTCTGGGAGCATTCCAAATCCATCCACCAGAGAAGATTTTAGGCTCAGAAATGCAGTACATGAAACTGAGAACCTGCCAAGGACATACCAGAAATTTGCGCAGCAGAATAATCAGGTGACTTCTGAGCCCACGACATCTCAGTTTGGTCAAGCTCAAGAGTTGCAGCAGCCGCAACAGCAGATATCACATGTGCCTCAAATGGTTCAAAGAGATGTTCAAGCAGGGGGTCGGGGGAATCAACATCTGCAAAATATCAATACAAATGAAGGTGGAGAAACAGATCGCATGCAAGCGACATTACAGCTTGCAGCAGCTCTACTTCAGAAAATCCAACAAGGGAAAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

911

Amino Acids

101.95

Weight (kDa)

7.11

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 95 6.8e-12 RNA recognition motif
RRM_1 PF00076 174 - 222 2.5e-07 RNA recognition motif
SPOC PF07744 478 - 598 1.4e-24 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2379
Acc16I TGCGCA 1 cut(s) 2484
Acc36I ACCTGC 1 cut(s) 2466
Acc65I GGTACC 1 cut(s) 1762
AccB1I GGYRCC 2 cut(s) 76, 1762
AccB7I CCANNNNNTGG 1 cut(s) 1599
AccBSI CCGCTC 2 cut(s) 36, 283
AccI GTMKAC 1 cut(s) 1179
AccII CGCG 2 cut(s) 24, 46
AclI AACGTT 1 cut(s) 352
AclWI GGATC 6 cut(s) 107, 376, 778, 1256, 1834, 2186
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 6 cut(s) 512, 718, 901, 1652, 2137, 2477
AcuI CTGAAG 5 cut(s) 239, 1778, 1896, 2186, 2690
AcvI CACGTG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 5 cut(s) 669, 1543, 1728, 1764, 2442
AfiI CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
AflIII ACRYGT 3 cut(s) 140, 978, 2572
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 5 cut(s) 165, 571, 1618, 1765, 2286
AjuI GAANNNNNNNTTGG 2 cut(s) 2104, 2136
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 82, 156
AlwI GGATC 6 cut(s) 107, 376, 778, 1256, 1834, 2186
AlwNI CAGNNNCTG 1 cut(s) 2147
AoxI GGCC 3 cut(s) 190, 941, 2228
ApeKI GCWGC 9 cut(s) 69, 1678, 1685, 2327, 2485, 2548, 2551, 2693, 2696
ApoI RAATTY 6 cut(s) 512, 718, 901, 1652, 2137, 2477
Asp700I GAANNNNTTC 2 cut(s) 718, 1400
Asp718I GGTACC 1 cut(s) 1762
AspLEI GCGC 2 cut(s) 79, 2485
AspS9I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
AsuC2I CCSGG 2 cut(s) 189, 945
AsuII TTCGAA 1 cut(s) 1895
AsuNHI GCTAGC 1 cut(s) 617
AvaII GGWCC 3 cut(s) 1507, 1710, 2108
BaeGI GKGCMC 1 cut(s) 1486
BanI GGYRCC 2 cut(s) 76, 1762
BanII GRGCYC 2 cut(s) 879, 2514
BauI CACGAG 1 cut(s) 2265
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 3 cut(s) 342, 1133, 2112
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 9 cut(s) 81, 1690, 1697, 2339, 2497, 2560, 2563, 2705, 2708
BccI CCATC 4 cut(s) 331, 745, 1741, 2413
BceAI ACGGC 3 cut(s) 67, 73, 1673
BciT130I CCWGG 5 cut(s) 167, 573, 1620, 1767, 2288
BciVI GTATCC 4 cut(s) 1176, 1634, 1927, 2088
BcnI CCSGG 2 cut(s) 189, 945
BcoDI GTCTC 2 cut(s) 82, 156
BfaI CTAG 9 cut(s) 465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
BfmI CTRYAG 2 cut(s) 880, 1452
BfoI RGCGCY 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 2466
BfuI GTATCC 4 cut(s) 1176, 1634, 1927, 2088
BglI GCCNNNNNGGC 2 cut(s) 248, 2357
BglII AGATCT 1 cut(s) 833
BlpI GCTNAGC 1 cut(s) 32
Bme1390I CCNGG 7 cut(s) 167, 189, 573, 945, 1620, 1767, 2288
Bme18I GGWCC 3 cut(s) 1507, 1710, 2108
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
BmiI GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
BmrFI CCNGG 7 cut(s) 167, 189, 573, 945, 1620, 1767, 2288
BmsI GCATC 5 cut(s) 837, 1618, 1788, 2218, 2369
BmtI GCTAGC 1 cut(s) 621
BpiI GAAGAC 3 cut(s) 342, 1133, 2112
BplI GAGNNNNNCTC 2 cut(s) 2198, 2230
BpmI CTGGAG 1 cut(s) 1299
Bpu10I CCTNAGC 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 1895
BpuEI CTTGAG 1 cut(s) 2523
BpuMI CCSGG 2 cut(s) 189, 945
BsaAI YACGTR 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 2338
BsaXI ACNNNNNCTCC 4 cut(s) 718, 748, 931, 961
Bsc4I CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
Bse1I ACTGG 7 cut(s) 438, 1316, 1558, 1593, 2120, 2195, 2257
BseBI CCWGG 5 cut(s) 167, 573, 1620, 1767, 2288
BseGI GGATG 6 cut(s) 232, 514, 737, 1708, 2209, 2405
BseLI CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
BseNI ACTGG 7 cut(s) 438, 1316, 1558, 1593, 2120, 2195, 2257
BseRI GAGGAG 2 cut(s) 828, 952
BseSI GKGCMC 1 cut(s) 1486
BseX3I CGGCCG 1 cut(s) 190
BseXI GCAGC 9 cut(s) 81, 1690, 1697, 2339, 2497, 2560, 2563, 2705, 2708
BseYI CCCAGC 1 cut(s) 2295
Bsh1236I CGCG 2 cut(s) 24, 46
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 3 cut(s) 192, 943, 2230
BshNI GGYRCC 2 cut(s) 76, 1762
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 400
BsiSI CCGG 4 cut(s) 189, 193, 945, 2339
BslFI GGGAC 3 cut(s) 1094, 1462, 2121
BslI CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
BsmAI GTCTC 2 cut(s) 82, 156
BsmFI GGGAC 3 cut(s) 1094, 1462, 2121
BsmI GAATGC 2 cut(s) 2265, 2394
BsnI GGCC 3 cut(s) 192, 943, 2230
Bso31I GGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 1895
Bsp1286I GDGCHC 4 cut(s) 400, 879, 1486, 2514
Bsp1407I TGTACA 1 cut(s) 667
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 2 cut(s) 243, 1076
BspANI GGCC 3 cut(s) 192, 943, 2230
BspFNI CGCG 2 cut(s) 24, 46
BspLI GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
BspMI ACCTGC 1 cut(s) 2466
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 6 cut(s) 107, 376, 778, 1256, 1834, 2186
BspQI GCTCTTC 2 cut(s) 258, 642
BspT104I TTCGAA 1 cut(s) 1895
BspT107I GGYRCC 2 cut(s) 76, 1762
BspTNI GGTCTC 1 cut(s) 156
BsrBI CCGCTC 2 cut(s) 36, 283
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 7 cut(s) 438, 1316, 1558, 1593, 2120, 2195, 2257
BssNAI GTATAC 1 cut(s) 1180
BssNI GRCGYC 1 cut(s) 77
BssSI CACGAG 1 cut(s) 2265
BssT1I CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
Bst1107I GTATAC 1 cut(s) 1180
Bst2BI CACGAG 1 cut(s) 2265
Bst2UI CCWGG 5 cut(s) 167, 573, 1620, 1767, 2288
Bst4CI ACNGT 3 cut(s) 119, 710, 2188
Bst6I CTCTTC 3 cut(s) 258, 642, 2370
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 2 cut(s) 1595, 1691
BstAUI TGTACA 1 cut(s) 667
BstBAI YACGTR 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 1895
BstC8I GCNNGC 9 cut(s) 274, 400, 619, 1362, 1683, 1879, 2672, 2676, 2691
BstDSI CCRYGG 2 cut(s) 243, 1076
BstEII GGTNACC 1 cut(s) 1328
BstENI CCTNNNNNAGG 2 cut(s) 270, 2237
BstF5I GGATG 6 cut(s) 232, 514, 737, 1708, 2209, 2405
BstFNI CGCG 2 cut(s) 24, 46
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 2485
BstMAI GTCTC 2 cut(s) 82, 156
BstMCI CGRYCG 1 cut(s) 193
BstNI CCWGG 5 cut(s) 167, 573, 1620, 1767, 2288
BstNSI RCATGY 3 cut(s) 982, 2576, 2674
BstPI GGTNACC 1 cut(s) 1328
BstSCI CCNGG 7 cut(s) 165, 187, 571, 943, 1618, 1765, 2286
BstSFI CTRYAG 2 cut(s) 880, 1452
BstSLI GKGCMC 1 cut(s) 1486
BstUI CGCG 2 cut(s) 24, 46
BstV1I GCAGC 9 cut(s) 81, 1690, 1697, 2339, 2497, 2560, 2563, 2705, 2708
BstV2I GAAGAC 3 cut(s) 342, 1133, 2112
BstX2I RGATCY 3 cut(s) 368, 833, 1826
BstYI RGATCY 3 cut(s) 368, 833, 1826
BstZ17I GTATAC 1 cut(s) 1180
BstZI CGGCCG 1 cut(s) 190
BsuI GTATCC 4 cut(s) 1176, 1634, 1927, 2088
BsuRI GGCC 3 cut(s) 192, 943, 2230
BtgI CCRYGG 2 cut(s) 243, 1076
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 6 cut(s) 232, 514, 737, 1708, 2209, 2405
BtsIMutI CAGTG 5 cut(s) 324, 715, 726, 1215, 1600
BveI ACCTGC 1 cut(s) 2466
Cac8I GCNNGC 9 cut(s) 274, 400, 619, 1362, 1683, 1879, 2672, 2676, 2691
CaiI CAGNNNCTG 1 cut(s) 2147
CfoI GCGC 2 cut(s) 79, 2485
Cfr13I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
CseI GACGC 2 cut(s) 30, 239
Csp6I GTAC 5 cut(s) 668, 1542, 1727, 1763, 2441
CviQI GTAC 5 cut(s) 668, 1542, 1727, 1763, 2441
DinI GGCGCC 1 cut(s) 78
DrdI GACNNNNNNGTC 1 cut(s) 2379
DseDI GACNNNNNNGTC 1 cut(s) 2379
EaeI YGGCCR 1 cut(s) 190
EagI CGGCCG 1 cut(s) 190
Eam1104I CTCTTC 3 cut(s) 258, 642, 2370
EarI CTCTTC 3 cut(s) 258, 642, 2370
EciI GGCGGA 3 cut(s) 30, 54, 320
EclXI CGGCCG 1 cut(s) 190
Eco130I CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
Eco24I GRGCYC 2 cut(s) 879, 2514
Eco31I GGTCTC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 2568
Eco47I GGWCC 3 cut(s) 1507, 1710, 2108
Eco52I CGGCCG 1 cut(s) 190
Eco57I CTGAAG 5 cut(s) 239, 1778, 1896, 2186, 2690
Eco72I CACGTG 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 1328
EcoNI CCTNNNNNAGG 2 cut(s) 270, 2237
EcoO109I RGGNCCY 2 cut(s) 1507, 2229
EcoO65I GGTNACC 1 cut(s) 1328
EcoRI GAATTC 2 cut(s) 718, 2137
EcoRII CCWGG 5 cut(s) 165, 571, 1618, 1765, 2286
EcoRV GATATC 1 cut(s) 2568
EcoT14I CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
EcoT22I ATGCAT 1 cut(s) 1662
EcoT38I GRGCYC 2 cut(s) 879, 2514
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
ErhI CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
FalI AAGNNNNNCTT 4 cut(s) 514, 546, 621, 653
FaqI GGGAC 3 cut(s) 1094, 1462, 2121
FauI CCCGC 2 cut(s) 288, 1357
FblI GTMKAC 1 cut(s) 1179
FokI GGATG 6 cut(s) 239, 521, 724, 1715, 2196, 2392
FriOI GRGCYC 2 cut(s) 879, 2514
FspBI CTAG 9 cut(s) 465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
FspI TGCGCA 1 cut(s) 2484
GlaI GCGC 2 cut(s) 78, 2484
GsaI CCCAGC 1 cut(s) 2299
GsuI CTGGAG 1 cut(s) 1299
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 3 cut(s) 192, 943, 2230
HapII CCGG 4 cut(s) 189, 193, 945, 2339
HgaI GACGC 2 cut(s) 30, 239
HhaI GCGC 2 cut(s) 79, 2485
Hin1I GRCGYC 1 cut(s) 77
Hin6I GCGC 2 cut(s) 77, 2483
HinP1I GCGC 2 cut(s) 77, 2483
HinfI GANTC 9 cut(s) 106, 860, 1133, 1300, 1343, 1401, 1946, 2380, 2620
HpaII CCGG 4 cut(s) 189, 193, 945, 2339
Hpy166II GTNNAC 5 cut(s) 297, 668, 1025, 1180, 1932
Hpy188I TCNGA 9 cut(s) 161, 778, 833, 958, 1738, 1747, 2432, 2509, 2709
Hpy8I GTNNAC 5 cut(s) 297, 668, 1025, 1180, 1932
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 9 cut(s) 214, 496, 708, 1439, 1498, 1753, 1920, 2310, 2645
HpyCH4III ACNGT 3 cut(s) 119, 710, 2188
HpyCH4IV ACGT 4 cut(s) 142, 328, 352, 1095
HpySE526I ACGT 4 cut(s) 142, 328, 352, 1095
Hsp92I GRCGYC 1 cut(s) 77
HspAI GCGC 2 cut(s) 77, 2483
KasI GGCGCC 1 cut(s) 76
KpnI GGTACC 1 cut(s) 1766
LguI GCTCTTC 2 cut(s) 258, 642
LmnI GCTCC 7 cut(s) 195, 687, 807, 1112, 2206, 2341, 2391
Lsp1109I GCAGC 9 cut(s) 81, 1690, 1697, 2339, 2497, 2560, 2563, 2705, 2708
LweI GCATC 5 cut(s) 837, 1618, 1788, 2218, 2369
MaeI CTAG 9 cut(s) 465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
MaeII ACGT 4 cut(s) 142, 328, 352, 1095
MaeIII GTNAC 4 cut(s) 143, 1271, 1328, 2500
MbiI CCGCTC 2 cut(s) 36, 283
MfeI CAATTG 1 cut(s) 2354
MflI RGATCY 3 cut(s) 368, 833, 1826
MhlI GDGCHC 4 cut(s) 400, 879, 1486, 2514
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 2 cut(s) 1142, 2389
MmeI TCCRAC 2 cut(s) 1842, 2017
Mph1103I ATGCAT 1 cut(s) 1662
MroXI GAANNNNTTC 2 cut(s) 718, 1400
MseI TTAA 5 cut(s) 216, 521, 812, 1098, 1518
MspI CCGG 4 cut(s) 189, 193, 945, 2339
MspR9I CCNGG 7 cut(s) 167, 189, 573, 945, 1620, 1767, 2288
MunI CAATTG 1 cut(s) 2354
Mva1269I GAATGC 2 cut(s) 2265, 2394
MvaI CCWGG 5 cut(s) 167, 573, 1620, 1767, 2288
MvnI CGCG 2 cut(s) 24, 46
NarI GGCGCC 1 cut(s) 77
NciI CCSGG 2 cut(s) 189, 945
NcoI CCATGG 2 cut(s) 243, 1076
NheI GCTAGC 1 cut(s) 617
NlaIV GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
NmuCI GTSAC 3 cut(s) 143, 1328, 2500
NsbI TGCGCA 1 cut(s) 2484
NsiI ATGCAT 1 cut(s) 1662
NspI RCATGY 3 cut(s) 982, 2576, 2674
NspV TTCGAA 1 cut(s) 1895
PaeI GCATGC 1 cut(s) 2674
PciI ACATGT 2 cut(s) 978, 2572
PciSI GCTCTTC 2 cut(s) 258, 642
PctI GAATGC 2 cut(s) 2265, 2394
PdmI GAANNNNTTC 2 cut(s) 718, 1400
PfeI GAWTC 7 cut(s) 106, 860, 1300, 1343, 1401, 1946, 2620
PflFI GACNNNGTC 1 cut(s) 1132
PflMI CCANNNNNTGG 1 cut(s) 1599
PfoI TCCNGGA 1 cut(s) 2286
PleI GAGTC 2 cut(s) 1141, 2388
PluTI GGCGCC 1 cut(s) 80
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 2 cut(s) 1141, 2388
Ppu21I YACGTR 1 cut(s) 329
PpuMI RGGWCCY 1 cut(s) 1507
PscI ACATGT 2 cut(s) 978, 2572
Psp1406I AACGTT 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 1507
Psp6I CCWGG 5 cut(s) 165, 571, 1618, 1765, 2286
PspCI CACGTG 1 cut(s) 329
PspEI GGTNACC 1 cut(s) 1328
PspFI CCCAGC 1 cut(s) 2295
PspGI CCWGG 5 cut(s) 165, 571, 1618, 1765, 2286
PspN4I GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
PspPI GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
PspPPI RGGWCCY 1 cut(s) 1507
PstNI CAGNNNCTG 1 cut(s) 2147
PsuI RGATCY 3 cut(s) 368, 833, 1826
PsyI GACNNNGTC 1 cut(s) 1132
RsaI GTAC 5 cut(s) 669, 1543, 1728, 1764, 2442
RsaNI GTAC 5 cut(s) 668, 1542, 1727, 1763, 2441
SapI GCTCTTC 2 cut(s) 258, 642
SaqAI TTAA 5 cut(s) 216, 521, 812, 1098, 1518
Sau96I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
SchI GAGTC 2 cut(s) 1142, 2389
ScrFI CCNGG 7 cut(s) 167, 189, 573, 945, 1620, 1767, 2288
SduI GDGCHC 4 cut(s) 400, 879, 1486, 2514
SfaNI GCATC 5 cut(s) 837, 1618, 1788, 2218, 2369
SfcI CTRYAG 2 cut(s) 880, 1452
SfoI GGCGCC 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 1895
SinI GGWCC 3 cut(s) 1507, 1710, 2108
SmlI CTYRAG 1 cut(s) 2538
SmoI CTYRAG 1 cut(s) 2538
SphI GCATGC 1 cut(s) 2674
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 9 cut(s) 465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
StyD4I CCNGG 7 cut(s) 165, 187, 571, 943, 1618, 1765, 2286
StyI CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
TaaI ACNGT 3 cut(s) 119, 710, 2188
TaiI ACGT 4 cut(s) 145, 331, 355, 1098
TaqI TCGA 6 cut(s) 86, 291, 787, 1309, 1895, 2002
TaqII GACCGA 1 cut(s) 2206
TatI WGTACW 3 cut(s) 667, 1541, 2440
TauI GCSGC 7 cut(s) 39, 49, 69, 82, 242, 635, 2557
TfiI GAWTC 7 cut(s) 106, 860, 1300, 1343, 1401, 1946, 2620
Tru1I TTAA 5 cut(s) 216, 521, 812, 1098, 1518
Tru9I TTAA 5 cut(s) 216, 521, 812, 1098, 1518
TscAI CASTG 5 cut(s) 324, 715, 733, 1222, 1600
TseFI GTSAC 3 cut(s) 143, 1328, 2500
TseI GCWGC 9 cut(s) 69, 1678, 1685, 2327, 2485, 2548, 2551, 2693, 2696
Tsp45I GTSAC 3 cut(s) 143, 1328, 2500
TspGWI ACGGA 1 cut(s) 1917
TspRI CASTG 5 cut(s) 324, 715, 733, 1222, 1600
Tth111I GACNNNGTC 1 cut(s) 1132
Van91I CCANNNNNTGG 1 cut(s) 1599
VpaK11BI GGWCC 3 cut(s) 1507, 1710, 2108
XagI CCTNNNNNAGG 2 cut(s) 270, 2237
XapI RAATTY 6 cut(s) 512, 718, 901, 1652, 2137, 2477
XbaI TCTAGA 2 cut(s) 961, 1558
XceI RCATGY 3 cut(s) 982, 2576, 2674
XmiI GTMKAC 1 cut(s) 1179
XmnI GAANNNNTTC 2 cut(s) 718, 1400
XspI CTAG 9 cut(s) 465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
Zsp2I ATGCAT 1 cut(s) 1662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.