Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006758

Physical Location & Seq

Genomic Coordinates Reverse (-)

66988921 .. 66997435

Gene Structure 8515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG497300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGGCGGGTCGGGGCGGAGGACGCGACAGGCTGAGCGGCGGAACGCGGCGTTTTGACGGCAAAGGCGGCAGCAAAGCGCCGCCGTCGAGACACTTGTGGATCGGGAATCTCTCTCACAGTATCACCGAGGACGACCTGACACGTCACTTTTTGCAGTTCGGAGACCTGGAAAGCGTGGCGTTCCAGCCCGGCCGGAGCTACGCCTTCATCAATTTTAACAGGGAGGATGACGCAATCGCCGCCATGGAGGCTCTTCAGGGCTTTCCTGTTGCAGGCAACCCGCTCAGGGTCGAGTTTACCAAGGCGGATAAATCATCAGTGCCATCACGTGAAGAAGACTACTCCCAACAACGTTCAGCAGTAAGAGGATCTCCTTTGTTGCAAAGGGAGTTTAGAGCACGCCAAGATACTCCTGAACAATTTTATCAAGAAAAATCCAGTATGGGTGATAAAAACACAGAACCTAGTGAAGTATTATGGATAGGTTTTCCAGCTTTATTGAAGGTGGATGAATTTATATTAAGGAAGTCTTTTGCACCATTCGGTGAAATTGAGAAGATAACTGCCTTTCCTGGTCGTAGTTATGCGTTTGTGCGATTTAGGAGTGTAATGTCAGCTAGCAGAGCGAAAGCGGCTCTTCAAGGAAAATTATTTGGAAACCCCCGTGTACATATTTGTTTTGCAAGGAGCGACACCAGTTCATCAAACAGCGGAAGGAATTCAATCACTGACACTCCATCCCCACATTTGAAGTTGAATGGTCGTTCTGGATCATCTGAGAACTTTCGACAAGATAGGAACTTTGGGAGCTTAACAGAGGATTTTAGCATCAGATCTCCTCAGTATTTCTCAACTTTGGATTCTGGTGGTTATGAGCCCTATAGTATAAAGAGGAAAGGAAATTTATGGACAGGTGAGAACAATACATTTGAACAGAGGAGGCCCGGTGAAGTATCTGATCTAGAACTCTCACAAGACATGTATGGTTATCGGGGTAGTCCTATGAGAGAGAAATATGCTCGTTTACATGATTATCCTCAAAGATTTCCTGAAACAAATCCCCCGTATGAAGAACCATGGGACTTACCAGATGACGTTAATTTCTTTCATGGAGCCAAGAAATTGAAGACAGAGTCTTACATTCCTGAGAAAGAGCTTCCAGAGTATCCAATGTCTGTATACGAACAAGAAAAACATGGTTTCCCTAGATTATTCGCTGATTTTCACCAAGCTGACAATTCCAATAGAAACTTTGAGGCTGATCCATTTGGTTACAAACAAATCCCTGAACGACCAATGAATCTAGCTCTGCCTCCAGTTGAGAGGGGTGACCCTTGGAAAGAATCTTATGGTAATTTGCAGGCGGGTTCTCAGCTACTAAATTCTGTTGATAGGAAAAGATTCACTCCTGAACCAAAGAAGTCTTTGGAACTATGGAAATGGGAAGGGACTATAGCAAAGGGAGGAACTCCTGTCTGTCGTGCCCGTTGCTTTCCTGTGGGGAAGGTCCTTGACATTAACTTGCCTGAGTTTTTAGATTGTACTGCAAGGACTGGTCTAGATATGCTTTCTAAGCATTACGATCAAGCAACCAGTGCTTGGGTTGTGTTCTTTTCCCCCGGAAGTGATGCTGATATTGGATACTACAATGAATTTATGCATTATCTTGGGGAGAAGCAGCGAGCAGCCGTTGCTAAATTGGATGACAGGACCACCTTGTTTCTTGTACCCCCATCAGAGTTCTCAGAGAAAGTGCTGAAGGTACCTGGGAAAGTCAGCATCTCTGGTGTTGTTTTGAGGTTAGACCAGCCTAGTTCCAACTTTGGATCTTATCACCAGCAACATGAAAGAAATGATACTAGATTATTGTCATTTGCTGGCGACCCACCATATTCAAAATTGCCAACACCTTCAGTATCCATTCCTCTGTTTACATCTTTGCCTGATTCAAGTAAATCAGGAGTTAGCAATCTATCTTCCTTGGGGAACTTTTCATCAATTCCACCAGCTTCATTTTCTGGTTCAGCTCATGGTGTTGGAAATGGATATGAACCTTACAATGAGAACAGGCATGAGTATCCACTTCATAAGGAAGGCCCTATGTTGGGACCAAACTGGTCTTCTCACCACCCACAGAATTCAGTTTCTGTTGCTAGAAATAGACCCAGCCAAGTGTCCAATAATGCTGTTGATCCAGTTCTTCAGGAGCATCCCTCGGTCATTCAAAGGCCCCTGCAAGAGGCAATCCCTACTGGTGGAATGCCTCATGTTCAAAACAGCAATTTCCAGGACACCCAGCCTTCGGTTTCTTTACCTACGCCTCTTGCAGCCCTGCAACCGGAGCAACTTGCCCAATTGGCATCTCTTCTTGGACAGCAGAGGCAGTCTGGGAGCATTCCAAATCCATCCACCAGAGAAGATTTTAGGCTCAGAAATGCAGTACATGAAACTGAGAACCTGCCAAGGACATACCAGAAATTTGCACAGCAGAATAATCAGGTGACTTCTGAGCCCACGACATCTCAGTTTGGTCAAGCTCAAGAGTTGCAGCTGCCGCAACAGCAGATATCACATGTGCCTCAAATGGTTCAAAGAGATGTTCAAGCAGGGGGTCGGGGGAATCAACATCTGCAAAATATCAATACAAATGAAGGTGGAGAAACAGATCGCATGCAAGCGACATTACAGCTTGCAGCAGCTCTACTTCAGAAAATCCAACAAGGGAAAGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 SPOC

Protein Analysis

911

Amino Acids

101.84

Weight (kDa)

6.79

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	32 - 95	6.8e-12	RNA recognition motif
RRM_1	PF00076	174 - 222	2.5e-07	RNA recognition motif
SPOC	PF07744	478 - 598	1.4e-24	SPOC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12640 AT4G12640 AT4G12640 AT4G12640
fragaria_vesca	FvH4_6g40190 FvH4_6g40190
malus_domestica	MD09G1134400.v1.1 MD17G1123200.v1.1 MD17G1123300.v1.1
prunus_persica	Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1 Prupe.3G192300_v2.0.a1
pyrus_communis	pycom09g05560 pycom17g11470
rosa_chinensis	RchiOBHm_Chr2g0155211
rosa_laevigata	RLG00000020826
rosa_multiflora	Rmu_co8185832.1_g000001 Rmu_sc0004976.1_g000040
rosa_roxburghii	Rroxscaffold_2G00093870
rosa_rugosa	Rorug02G0445900 Rorug02G0445900
rosa_samantha	Rh2AG512300 Rh2BG523000 Rh2CG497300 Rh2DG532700
rosa_wichuraiana	Rw2G042090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2466
Acc65I	GGTACC	1 cut(s)	1762
AccB1I	GGYRCC	1 cut(s)	1762
AccB7I	CCANNNNNTGG	1 cut(s)	1599
AccBSI	CCGCTC	2 cut(s)	36, 283
AccI	GTMKAC	1 cut(s)	1179
AccII	CGCG	2 cut(s)	24, 46
AclI	AACGTT	1 cut(s)	352
AclWI	GGATC	6 cut(s)	107, 376, 778, 1256, 1834, 2186
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	7 cut(s)	512, 718, 901, 1381, 1652, 2137, 2477
AcuI	CTGAAG	5 cut(s)	239, 1778, 1896, 2186, 2690
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	5 cut(s)	669, 1543, 1728, 1764, 2442
AfiI	CCNNNNNNNGG	9 cut(s)	272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
AflIII	ACRYGT	3 cut(s)	140, 978, 2572
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	4 cut(s)	165, 571, 1765, 2286
AjuI	GAANNNNNNNTTGG	2 cut(s)	2104, 2136
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	82, 156
AlwI	GGATC	6 cut(s)	107, 376, 778, 1256, 1834, 2186
AlwNI	CAGNNNCTG	1 cut(s)	2147
AoxI	GGCC	4 cut(s)	190, 941, 2095, 2228
ApeKI	GCWGC	8 cut(s)	69, 1678, 1685, 2327, 2548, 2551, 2693, 2696
ApoI	RAATTY	7 cut(s)	512, 718, 901, 1381, 1652, 2137, 2477
Asp700I	GAANNNNTTC	2 cut(s)	718, 1400
Asp718I	GGTACC	1 cut(s)	1762
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	6 cut(s)	942, 1507, 1710, 2096, 2108, 2229
AsuC2I	CCSGG	3 cut(s)	189, 945, 1620
AsuNHI	GCTAGC	1 cut(s)	617
AvaII	GGWCC	3 cut(s)	1507, 1710, 2108
BaeGI	GKGCMC	1 cut(s)	1486
BanI	GGYRCC	1 cut(s)	1762
BanII	GRGCYC	2 cut(s)	879, 2514
BbrPI	CACGTG	1 cut(s)	329
BbsI	GAAGAC	3 cut(s)	342, 1133, 2112
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	8 cut(s)	81, 1690, 1697, 2339, 2538, 2560, 2705, 2708
BccI	CCATC	4 cut(s)	331, 745, 1741, 2413
BceAI	ACGGC	3 cut(s)	67, 73, 1673
BciT130I	CCWGG	4 cut(s)	167, 573, 1767, 2288
BciVI	GTATCC	4 cut(s)	1176, 1634, 1927, 2088
BcnI	CCSGG	3 cut(s)	189, 945, 1620
BcoDI	GTCTC	2 cut(s)	82, 156
BfaI	CTAG	9 cut(s)	465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
BfmI	CTRYAG	2 cut(s)	880, 1452
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	2466
BfuI	GTATCC	4 cut(s)	1176, 1634, 1927, 2088
BglI	GCCNNNNNGGC	2 cut(s)	248, 2357
BglII	AGATCT	1 cut(s)	833
BlpI	GCTNAGC	1 cut(s)	32
Bme1390I	CCNGG	7 cut(s)	167, 189, 573, 945, 1620, 1767, 2288
Bme18I	GGWCC	3 cut(s)	1507, 1710, 2108
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	6 cut(s)	942, 1507, 1710, 2096, 2108, 2229
BmiI	GGNNCC	4 cut(s)	1114, 1764, 2109, 2231
BmrFI	CCNGG	7 cut(s)	167, 189, 573, 945, 1620, 1767, 2288
BmsI	GCATC	5 cut(s)	837, 1618, 1788, 2218, 2369
BmtI	GCTAGC	1 cut(s)	621
BpiI	GAAGAC	3 cut(s)	342, 1133, 2112
BplI	GAGNNNNNCTC	2 cut(s)	2198, 2230
BpmI	CTGGAG	1 cut(s)	1299
Bpu10I	CCTNAGC	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	2523
BpuMI	CCSGG	3 cut(s)	189, 945, 1620
BsaAI	YACGTR	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	2338
BsaXI	ACNNNNNCTCC	4 cut(s)	718, 748, 931, 961
Bsc4I	CCNNNNNNNGG	9 cut(s)	272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
Bse1I	ACTGG	8 cut(s)	438, 696, 1316, 1558, 1593, 2120, 2195, 2257
BseBI	CCWGG	4 cut(s)	167, 573, 1767, 2288
BseGI	GGATG	6 cut(s)	232, 514, 737, 1708, 2209, 2405
BseLI	CCNNNNNNNGG	9 cut(s)	272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
BseNI	ACTGG	8 cut(s)	438, 696, 1316, 1558, 1593, 2120, 2195, 2257
BseRI	GAGGAG	2 cut(s)	828, 952
BseSI	GKGCMC	1 cut(s)	1486
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	8 cut(s)	81, 1690, 1697, 2339, 2538, 2560, 2705, 2708
BseYI	CCCAGC	2 cut(s)	2165, 2295
Bsh1236I	CGCG	2 cut(s)	24, 46
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	4 cut(s)	192, 943, 2097, 2230
BshNI	GGYRCC	1 cut(s)	1762
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	5 cut(s)	189, 193, 945, 1620, 2339
BslFI	GGGAC	3 cut(s)	1094, 1462, 2121
BslI	CCNNNNNNNGG	9 cut(s)	272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
BsmAI	GTCTC	2 cut(s)	82, 156
BsmFI	GGGAC	3 cut(s)	1094, 1462, 2121
BsmI	GAATGC	2 cut(s)	2265, 2394
BsnI	GGCC	4 cut(s)	192, 943, 2097, 2230
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	4 cut(s)	400, 879, 1486, 2514
Bsp1407I	TGTACA	1 cut(s)	667
Bsp1720I	GCTNAGC	1 cut(s)	32
Bsp19I	CCATGG	2 cut(s)	243, 1076
BspANI	GGCC	4 cut(s)	192, 943, 2097, 2230
BspFNI	CGCG	2 cut(s)	24, 46
BspLI	GGNNCC	4 cut(s)	1114, 1764, 2109, 2231
BspMI	ACCTGC	1 cut(s)	2466
BspOI	GCTAGC	1 cut(s)	621
BspPI	GGATC	6 cut(s)	107, 376, 778, 1256, 1834, 2186
BspQI	GCTCTTC	2 cut(s)	258, 642
BspT107I	GGYRCC	1 cut(s)	1762
BspTNI	GGTCTC	1 cut(s)	156
BsrBI	CCGCTC	2 cut(s)	36, 283
BsrGI	TGTACA	1 cut(s)	667
BsrI	ACTGG	8 cut(s)	438, 696, 1316, 1558, 1593, 2120, 2195, 2257
BssNAI	GTATAC	1 cut(s)	1180
BssT1I	CCWWGG	6 cut(s)	243, 300, 1076, 1334, 1980, 2462
Bst1107I	GTATAC	1 cut(s)	1180
Bst2UI	CCWGG	4 cut(s)	167, 573, 1767, 2288
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	3 cut(s)	258, 642, 2370
BstAPI	GCANNNNNTGC	2 cut(s)	1595, 1691
BstAUI	TGTACA	1 cut(s)	667
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	9 cut(s)	274, 400, 619, 1362, 1683, 1879, 2672, 2676, 2691
BstDSI	CCRYGG	2 cut(s)	243, 1076
BstEII	GGTNACC	1 cut(s)	1328
BstENI	CCTNNNNNAGG	2 cut(s)	270, 2237
BstF5I	GGATG	6 cut(s)	232, 514, 737, 1708, 2209, 2405
BstFNI	CGCG	2 cut(s)	24, 46
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	82, 156
BstMCI	CGRYCG	1 cut(s)	193
BstNI	CCWGG	4 cut(s)	167, 573, 1767, 2288
BstNSI	RCATGY	3 cut(s)	982, 2576, 2674
BstPI	GGTNACC	1 cut(s)	1328
BstSCI	CCNGG	7 cut(s)	165, 187, 571, 943, 1618, 1765, 2286
BstSFI	CTRYAG	2 cut(s)	880, 1452
BstSLI	GKGCMC	1 cut(s)	1486
BstUI	CGCG	2 cut(s)	24, 46
BstV1I	GCAGC	8 cut(s)	81, 1690, 1697, 2339, 2538, 2560, 2705, 2708
BstV2I	GAAGAC	3 cut(s)	342, 1133, 2112
BstX2I	RGATCY	3 cut(s)	368, 833, 1826
BstYI	RGATCY	3 cut(s)	368, 833, 1826
BstZ17I	GTATAC	1 cut(s)	1180
BstZI	CGGCCG	1 cut(s)	190
BsuI	GTATCC	4 cut(s)	1176, 1634, 1927, 2088
BsuRI	GGCC	4 cut(s)	192, 943, 2097, 2230
BtgI	CCRYGG	2 cut(s)	243, 1076
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	6 cut(s)	232, 514, 737, 1708, 2209, 2405
BtsIMutI	CAGTG	3 cut(s)	324, 726, 1600
BveI	ACCTGC	1 cut(s)	2466
Cac8I	GCNNGC	9 cut(s)	274, 400, 619, 1362, 1683, 1879, 2672, 2676, 2691
CaiI	CAGNNNCTG	1 cut(s)	2147
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	6 cut(s)	942, 1507, 1710, 2096, 2108, 2229
CseI	GACGC	2 cut(s)	30, 239
Csp6I	GTAC	5 cut(s)	668, 1542, 1727, 1763, 2441
CviQI	GTAC	5 cut(s)	668, 1542, 1727, 1763, 2441
EaeI	YGGCCR	1 cut(s)	190
EagI	CGGCCG	1 cut(s)	190
Eam1104I	CTCTTC	3 cut(s)	258, 642, 2370
EarI	CTCTTC	3 cut(s)	258, 642, 2370
EciI	GGCGGA	3 cut(s)	30, 54, 320
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	6 cut(s)	243, 300, 1076, 1334, 1980, 2462
Eco24I	GRGCYC	2 cut(s)	879, 2514
Eco31I	GGTCTC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	2568
Eco47I	GGWCC	3 cut(s)	1507, 1710, 2108
Eco52I	CGGCCG	1 cut(s)	190
Eco57I	CTGAAG	5 cut(s)	239, 1778, 1896, 2186, 2690
Eco72I	CACGTG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	1328
EcoNI	CCTNNNNNAGG	2 cut(s)	270, 2237
EcoO109I	RGGNCCY	3 cut(s)	1507, 2096, 2229
EcoO65I	GGTNACC	1 cut(s)	1328
EcoRI	GAATTC	2 cut(s)	718, 2137
EcoRII	CCWGG	4 cut(s)	165, 571, 1765, 2286
EcoRV	GATATC	1 cut(s)	2568
EcoT14I	CCWWGG	6 cut(s)	243, 300, 1076, 1334, 1980, 2462
EcoT22I	ATGCAT	1 cut(s)	1662
EcoT38I	GRGCYC	2 cut(s)	879, 2514
ErhI	CCWWGG	6 cut(s)	243, 300, 1076, 1334, 1980, 2462
FalI	AAGNNNNNCTT	4 cut(s)	514, 546, 621, 653
FaqI	GGGAC	3 cut(s)	1094, 1462, 2121
FauI	CCCGC	2 cut(s)	288, 1357
FblI	GTMKAC	1 cut(s)	1179
FokI	GGATG	6 cut(s)	239, 521, 724, 1715, 2196, 2392
FriOI	GRGCYC	2 cut(s)	879, 2514
FspBI	CTAG	9 cut(s)	465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
GlaI	GCGC	1 cut(s)	78
GsaI	CCCAGC	2 cut(s)	2169, 2299
GsuI	CTGGAG	1 cut(s)	1299
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	192, 943, 2097, 2230
HapII	CCGG	5 cut(s)	189, 193, 945, 1620, 2339
HgaI	GACGC	2 cut(s)	30, 239
HhaI	GCGC	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	8 cut(s)	106, 860, 1133, 1300, 1343, 1401, 1946, 2620
HpaII	CCGG	5 cut(s)	189, 193, 945, 1620, 2339
Hpy166II	GTNNAC	5 cut(s)	297, 668, 1025, 1180, 1932
Hpy188I	TCNGA	9 cut(s)	161, 778, 833, 958, 1738, 1747, 2432, 2509, 2709
Hpy8I	GTNNAC	5 cut(s)	297, 668, 1025, 1180, 1932
Hpy99I	CGWCG	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	4 cut(s)	142, 328, 352, 1095
HpySE526I	ACGT	4 cut(s)	142, 328, 352, 1095
HspAI	GCGC	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	1766
LguI	GCTCTTC	2 cut(s)	258, 642
LmnI	GCTCC	7 cut(s)	195, 687, 807, 1112, 2206, 2341, 2391
Lsp1109I	GCAGC	8 cut(s)	81, 1690, 1697, 2339, 2538, 2560, 2705, 2708
LweI	GCATC	5 cut(s)	837, 1618, 1788, 2218, 2369
MaeI	CTAG	9 cut(s)	465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
MaeII	ACGT	4 cut(s)	142, 328, 352, 1095
MaeIII	GTNAC	4 cut(s)	143, 1271, 1328, 2500
MbiI	CCGCTC	2 cut(s)	36, 283
MfeI	CAATTG	1 cut(s)	2354
MflI	RGATCY	3 cut(s)	368, 833, 1826
MhlI	GDGCHC	4 cut(s)	400, 879, 1486, 2514
MlyI	GAGTC	1 cut(s)	1142
MmeI	TCCRAC	2 cut(s)	1842, 2017
Mph1103I	ATGCAT	1 cut(s)	1662
MroXI	GAANNNNTTC	2 cut(s)	718, 1400
MseI	TTAA	5 cut(s)	216, 521, 812, 1098, 1518
MspA1I	CMGCKG	2 cut(s)	711, 2551
MspI	CCGG	5 cut(s)	189, 193, 945, 1620, 2339
MspR9I	CCNGG	7 cut(s)	167, 189, 573, 945, 1620, 1767, 2288
MunI	CAATTG	1 cut(s)	2354
Mva1269I	GAATGC	2 cut(s)	2265, 2394
MvaI	CCWGG	4 cut(s)	167, 573, 1767, 2288
MvnI	CGCG	2 cut(s)	24, 46
NciI	CCSGG	3 cut(s)	189, 945, 1620
NcoI	CCATGG	2 cut(s)	243, 1076
NheI	GCTAGC	1 cut(s)	617
NlaIV	GGNNCC	4 cut(s)	1114, 1764, 2109, 2231
NmuCI	GTSAC	3 cut(s)	143, 1328, 2500
NsiI	ATGCAT	1 cut(s)	1662
NspI	RCATGY	3 cut(s)	982, 2576, 2674
PaeI	GCATGC	1 cut(s)	2674
PciI	ACATGT	2 cut(s)	978, 2572
PciSI	GCTCTTC	2 cut(s)	258, 642
PctI	GAATGC	2 cut(s)	2265, 2394
PdmI	GAANNNNTTC	2 cut(s)	718, 1400
PfeI	GAWTC	7 cut(s)	106, 860, 1300, 1343, 1401, 1946, 2620
PflFI	GACNNNGTC	1 cut(s)	1132
PflMI	CCANNNNNTGG	1 cut(s)	1599
PfoI	TCCNGGA	1 cut(s)	2286
PleI	GAGTC	1 cut(s)	1141
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	1141
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	1507
PscI	ACATGT	2 cut(s)	978, 2572
Psp1406I	AACGTT	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	1507
Psp6I	CCWGG	4 cut(s)	165, 571, 1765, 2286
PspCI	CACGTG	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	1328
PspFI	CCCAGC	2 cut(s)	2165, 2295
PspGI	CCWGG	4 cut(s)	165, 571, 1765, 2286
PspN4I	GGNNCC	4 cut(s)	1114, 1764, 2109, 2231
PspPI	GGNCC	6 cut(s)	942, 1507, 1710, 2096, 2108, 2229
PspPPI	RGGWCCY	1 cut(s)	1507
PstNI	CAGNNNCTG	1 cut(s)	2147
PsuI	RGATCY	3 cut(s)	368, 833, 1826
PsyI	GACNNNGTC	1 cut(s)	1132
PvuII	CAGCTG	1 cut(s)	2551
RsaI	GTAC	5 cut(s)	669, 1543, 1728, 1764, 2442
RsaNI	GTAC	5 cut(s)	668, 1542, 1727, 1763, 2441
SapI	GCTCTTC	2 cut(s)	258, 642
SaqAI	TTAA	5 cut(s)	216, 521, 812, 1098, 1518
Sau96I	GGNCC	6 cut(s)	942, 1507, 1710, 2096, 2108, 2229
SchI	GAGTC	1 cut(s)	1142
ScrFI	CCNGG	7 cut(s)	167, 189, 573, 945, 1620, 1767, 2288
SduI	GDGCHC	4 cut(s)	400, 879, 1486, 2514
SfaNI	GCATC	5 cut(s)	837, 1618, 1788, 2218, 2369
SfcI	CTRYAG	2 cut(s)	880, 1452
SinI	GGWCC	3 cut(s)	1507, 1710, 2108
SmlI	CTYRAG	1 cut(s)	2538
SmoI	CTYRAG	1 cut(s)	2538
SphI	GCATGC	1 cut(s)	2674
SspMI	CTAG	9 cut(s)	465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
StyD4I	CCNGG	7 cut(s)	165, 187, 571, 943, 1618, 1765, 2286
StyI	CCWWGG	6 cut(s)	243, 300, 1076, 1334, 1980, 2462
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	4 cut(s)	145, 331, 355, 1098
TaqI	TCGA	3 cut(s)	86, 291, 787
TaqII	GACCGA	1 cut(s)	2206
TatI	WGTACW	3 cut(s)	667, 1541, 2440
TauI	GCSGC	7 cut(s)	39, 49, 69, 82, 242, 635, 2557
TfiI	GAWTC	7 cut(s)	106, 860, 1300, 1343, 1401, 1946, 2620
Tru1I	TTAA	5 cut(s)	216, 521, 812, 1098, 1518
Tru9I	TTAA	5 cut(s)	216, 521, 812, 1098, 1518
TscAI	CASTG	3 cut(s)	324, 733, 1600
TseFI	GTSAC	3 cut(s)	143, 1328, 2500
TseI	GCWGC	8 cut(s)	69, 1678, 1685, 2327, 2548, 2551, 2693, 2696
Tsp45I	GTSAC	3 cut(s)	143, 1328, 2500
TspRI	CASTG	3 cut(s)	324, 733, 1600
Tth111I	GACNNNGTC	1 cut(s)	1132
Van91I	CCANNNNNTGG	1 cut(s)	1599
VpaK11BI	GGWCC	3 cut(s)	1507, 1710, 2108
XagI	CCTNNNNNAGG	2 cut(s)	270, 2237
XapI	RAATTY	7 cut(s)	512, 718, 901, 1381, 1652, 2137, 2477
XbaI	TCTAGA	2 cut(s)	961, 1558
XceI	RCATGY	3 cut(s)	982, 2576, 2674
XmiI	GTMKAC	1 cut(s)	1179
XmnI	GAANNNNTTC	2 cut(s)	718, 1400
XspI	CTAG	9 cut(s)	465, 618, 962, 1206, 1304, 1559, 1812, 1860, 2154
Zsp2I	ATGCAT	1 cut(s)	1662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.