Rroxscaffold_2G00093870

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006758
Physical Location & Seq
Forward (+)
15195543 .. 15204448
8906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093870.1

Sequence Viewer

Length: 2736 bp
ATGGCGGGTCGGGGCGGAGGACGCGACAGGCTGAGCGGCGGAACGCGGCGTTTTGACGGCAAAGGCGGCAGCAAGGCGCCGCCCTCGAGACACTTGTGGATCGGGAATCTCTCTCACAGTATCACCGAGGACGACCTGACACGTCACTTTTTGCAGTTCGGAGACTTGGAAAGCGTGGCGTTCCAGCCCGGTCGGAGCTACGCCTTCATCAATTTTAACAGGGAGGATGACGCAATCACCGCCATGGAGGCTCTTCAGGGCTTTCCTGTTGCAGGCAACCCGCTCAGGGTCGAGTTTACCAAGGCGGATAAATCATCAGTGCCATCACGTGAAGAAGACTACTCCCAACAACGTTCAGCAGTAAGAGGATCTCCTTTGTTGCAAAGGGAGTTTAGAGCACGCCAAGATACTACCGAACAATTTTATCAAGAAAAATCCAGTATGGGTGATAAAAACACAGAGCCTAGTGAAGTATTATGGATAGGTTTTCCAGCTTTATTGAAGGTGGATGAATTTATATTAAGGAAGTCTTTTGCACCATTCGGTGAAATTGAGAAGATAACTGCCTTTCCTGGTCGTAGTTATGCGTTTGTTCGATTTAGGAGTGTAATGTCAGCTAGCAGAGCGAAAGCAGCTCTTCAAGGAAAATTATTTGGAAACCCCCGTGTACATATTTGTTTTGCAAGGAGCGACACCAGCGCATCAAACAGTGGAAGGAATTCAATCACTGACGCTCCATCCCCACATTTGAAGTTGAATGGTCGTTCTGGATCATCTGAGAACTTTCGACAAGATAGGGACTTTGGGAGCTTAACAGATGATTTTAGCATCAGATCTCCTCAGTATTTCTCAACTTTGGATTCTGGTGGTTATGAGCCCTATAGTATAAAGAGGAAAGGAAATTTATGGACTGGTGAGAACAATACATTTGAACAGAGGAGGCCCGGTGAAGTATCTGATCTAGAACTCTCACAAGACATGTATGGTTATCGGGGTAGTCCTACGAGAGAGAAATATGCTCGTTTACGTGATTATTCTCAAAGATTTCCTGAAACAAATCCCCCATATGAAGAACCATGGGACTTACCAGATGACGTTAATTTCTTTCATGGAGCCAAGAAATTGAAGACAGAGTCTTACATTCCTGAGAAAGAGCTTCCAGAGTATCCGATGTCTGTATACGAACAAGAAAAACATGGTTTCCCTAGATTATTCACTGATTTTCACCAAGCTGACAATTCCAATAGAAACTTTGAGGCTGATCCATTTGGTTACAAACAAATCCCTGAACGACCAATGAATCTAACTCTACCTCCAGTTGAGAGGGGTGACCCTTGGAAAGAATCTTATGGTAATTTGCAGGCGGGTTCTCAGCTATTAAATTCTGTTGATAGGAAAAGATTCACTCCTGAACCAAAGAAGTCTTTGGAACTATGGAAATGGGAAGGGACTATAGCAAAGGGAGGAACTCCTGTCTGTCGTGCTCGTTGCTTTCCTGTGGGGAAGGTCCTTGACATTAACTTGCCTGAGTTTTTAGATTGTACTGCAAGGACTGGTCTAGATATGCTTTCTAAGCATTACGATCAAGCAACCAGTGCTTGGGTTGTGTTCTTTTCCCCTGGAAGTGATGCTGATATTGGATACTACAATGAGTTTATGCATTATCTTGGGGAGAAGCAGCGAGCAGCCGTTGCTAAATTAGATGACAGGACCACCTTGTTTCTTGTACCCCCATCAGAGTTCTCAGAGAAAGTGCTGAAGGTACCTGGGAAAGTCAGCATCTCTGGTGTTGTTTTGAGGTTAGACCAGCCTAGTTCCAACTTTGGATCTTATCACCAGCAACATGAAAGAAATGATACTAGATTATTGTCATTTACTGGCGACCCACCATATTCAAAATTGCCGACACCTTCAGTATCCATTCCTCCGTTTACATCTTTGCCTGATTCAAGTAAATCAGGAGTTAGCAATCTGTCTTCCTTGGGGAACTTTTCATCAATTCCACCAGCTTCATTTTCTGGTTCAGCTCATGGTGTTGGAAATGGATATGAACCTTACAATGAGAACAGGCATGAGTATCCACTTCATAAGGAAAGCCCTATGTTGGGACCAAACTGGTCTTCTCACCACCCACAGAATTCAGTTTCTGTTGCTAGAAATAGACCCAACCAAGTGTCCAATAATGCTGTTGATCCAGTTCTTCAGGAGCATCCCTCGGTCATGCAAAGGCCCCTGCAAGAGGCAATCCCTACTGGTGGAATGCCTCGTGTTCAAAACAGCAATTTCCAGGACACCCAGCCTTCGGTTTCTTTACCTACGCCTCTTGCAGCCCTGCAACCGGAGCAACTTGCCCAATTGGCATCTCTTCTCGGACAGCAGAGGCAGTCTGGGAGCATTCCAAATCCATCCACCAGAGAAGATTTTAGGCTCAGAAATGCAGTACATGAAACTGAGAACCTGCCAAGGACATACCAGAAATTTGCGCAGCAGAATAATCAGGTGACTTCTGAGCCCACGACATCTCAGTTTGGTCAAGCTCAAGAGTTGCAGCAGCTGCAACAGCAGATATCACATGTGCCTCAAATGGTTCAAAGAGATGTTCAAGCAGGGGGTCGGGGAAATCAACATCTGCAAAATATCAATACAAATGAAGGTGGAGAAACAGATCGCATGCAAGCGACATTACAGCTTGCAGCAGCTCTACTTCAGAAAATCCAACAAGGGAAAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000785 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009911 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0019219 GO:0019222 GO:0022414 GO:0031047 GO:0031048 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 SPOC

Protein Analysis

911

Amino Acids

101.99

Weight (kDa)

6.9

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 95 2.2e-11 RNA recognition motif
RRM_1 PF00076 174 - 222 2.5e-07 RNA recognition motif
SPOC PF07744 478 - 598 1.4e-24 SPOC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2484
Acc36I ACCTGC 1 cut(s) 2466
Acc65I GGTACC 1 cut(s) 1762
AccB1I GGYRCC 2 cut(s) 76, 1762
AccB7I CCANNNNNTGG 1 cut(s) 1599
AccBSI CCGCTC 2 cut(s) 36, 283
AccI GTMKAC 1 cut(s) 1179
AccII CGCG 2 cut(s) 24, 46
AclI AACGTT 1 cut(s) 352
AclWI GGATC 6 cut(s) 107, 376, 778, 1256, 1834, 2186
AcsI RAATTY 6 cut(s) 512, 718, 901, 1381, 2137, 2477
AcuI CTGAAG 5 cut(s) 239, 1778, 1896, 2186, 2690
AcvI CACGTG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 5 cut(s) 669, 1543, 1728, 1764, 2442
AfiI CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
AflIII ACRYGT 3 cut(s) 140, 978, 2572
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 4 cut(s) 571, 1618, 1765, 2286
AjuI GAANNNNNNNTTGG 2 cut(s) 2104, 2136
Alw21I GWGCWC 2 cut(s) 400, 1486
Alw26I GTCTC 2 cut(s) 82, 156
AlwI GGATC 6 cut(s) 107, 376, 778, 1256, 1834, 2186
AlwNI CAGNNNCTG 2 cut(s) 2147, 2554
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 2 cut(s) 941, 2228
ApoI RAATTY 6 cut(s) 512, 718, 901, 1381, 2137, 2477
Asp700I GAANNNNTTC 2 cut(s) 718, 1400
Asp718I GGTACC 1 cut(s) 1762
AspLEI GCGC 3 cut(s) 79, 701, 2485
AspS9I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
AsuC2I CCSGG 2 cut(s) 189, 945
AsuNHI GCTAGC 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 3 cut(s) 1507, 1710, 2108
BanI GGYRCC 2 cut(s) 76, 1762
BanII GRGCYC 2 cut(s) 879, 2514
BauI CACGAG 1 cut(s) 2265
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 4 cut(s) 342, 1133, 1968, 2112
Bbv12I GWGCWC 2 cut(s) 400, 1486
BccI CCATC 4 cut(s) 331, 745, 1741, 2413
BceAI ACGGC 2 cut(s) 73, 1673
BciT130I CCWGG 4 cut(s) 573, 1620, 1767, 2288
BciVI GTATCC 4 cut(s) 1176, 1634, 1927, 2088
BcnI CCSGG 2 cut(s) 189, 945
BcoDI GTCTC 2 cut(s) 82, 156
BfaI CTAG 8 cut(s) 465, 618, 962, 1206, 1559, 1812, 1860, 2154
BfmI CTRYAG 2 cut(s) 880, 1452
BfoI RGCGCY 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 2466
BfuI GTATCC 4 cut(s) 1176, 1634, 1927, 2088
BglI GCCNNNNNGGC 2 cut(s) 248, 2357
BglII AGATCT 1 cut(s) 833
BlpI GCTNAGC 1 cut(s) 32
Bme1390I CCNGG 6 cut(s) 189, 573, 945, 1620, 1767, 2288
Bme18I GGWCC 3 cut(s) 1507, 1710, 2108
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
BmiI GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
BmrFI CCNGG 6 cut(s) 189, 573, 945, 1620, 1767, 2288
BmsI GCATC 6 cut(s) 710, 837, 1618, 1788, 2218, 2369
BmtI GCTAGC 1 cut(s) 621
BpiI GAAGAC 4 cut(s) 342, 1133, 1968, 2112
BplI GAGNNNNNCTC 2 cut(s) 2198, 2230
BpmI CTGGAG 1 cut(s) 1299
Bpu10I CCTNAGC 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 2523
BpuMI CCSGG 2 cut(s) 189, 945
BsaAI YACGTR 2 cut(s) 329, 1028
BsaHI GRCGYC 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 2338
BsaXI ACNNNNNCTCC 6 cut(s) 718, 748, 931, 961, 1297, 1327
Bsc4I CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
Bse1I ACTGG 9 cut(s) 438, 916, 1316, 1558, 1593, 1882, 2120, 2195, 2257
BseBI CCWGG 4 cut(s) 573, 1620, 1767, 2288
BseGI GGATG 5 cut(s) 232, 514, 737, 2209, 2405
BseLI CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
BseNI ACTGG 9 cut(s) 438, 916, 1316, 1558, 1593, 1882, 2120, 2195, 2257
BseRI GAGGAG 2 cut(s) 828, 952
BseYI CCCAGC 1 cut(s) 2295
Bsh1236I CGCG 2 cut(s) 24, 46
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 2 cut(s) 943, 2230
BshNI GGYRCC 2 cut(s) 76, 1762
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 400, 1486
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 3 cut(s) 189, 945, 2339
BslFI GGGAC 4 cut(s) 812, 1094, 1462, 2121
BslI CCNNNNNNNGG 9 cut(s) 272, 286, 1599, 2104, 2105, 2239, 2255, 2302, 2338
BsmAI GTCTC 2 cut(s) 82, 156
BsmFI GGGAC 4 cut(s) 812, 1094, 1462, 2121
BsmI GAATGC 2 cut(s) 2265, 2394
BsnI GGCC 2 cut(s) 943, 2230
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 4 cut(s) 400, 879, 1486, 2514
Bsp1407I TGTACA 1 cut(s) 667
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 2 cut(s) 243, 1076
BspANI GGCC 2 cut(s) 943, 2230
BspFNI CGCG 2 cut(s) 24, 46
BspLI GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
BspMI ACCTGC 1 cut(s) 2466
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 6 cut(s) 107, 376, 778, 1256, 1834, 2186
BspQI GCTCTTC 2 cut(s) 258, 642
BspT107I GGYRCC 2 cut(s) 76, 1762
BsrBI CCGCTC 2 cut(s) 36, 283
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 9 cut(s) 438, 916, 1316, 1558, 1593, 1882, 2120, 2195, 2257
BssNAI GTATAC 1 cut(s) 1180
BssNI GRCGYC 1 cut(s) 77
BssSI CACGAG 1 cut(s) 2265
BssT1I CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
Bst1107I GTATAC 1 cut(s) 1180
Bst2BI CACGAG 1 cut(s) 2265
Bst2UI CCWGG 4 cut(s) 573, 1620, 1767, 2288
Bst4CI ACNGT 2 cut(s) 119, 710
Bst6I CTCTTC 3 cut(s) 258, 642, 2370
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 3 cut(s) 1595, 1691, 2554
BstAUI TGTACA 1 cut(s) 667
BstBAI YACGTR 2 cut(s) 329, 1028
BstC8I GCNNGC 8 cut(s) 274, 400, 619, 1362, 1683, 2672, 2676, 2691
BstDSI CCRYGG 2 cut(s) 243, 1076
BstEII GGTNACC 1 cut(s) 1328
BstENI CCTNNNNNAGG 2 cut(s) 270, 2237
BstF5I GGATG 5 cut(s) 232, 514, 737, 2209, 2405
BstFNI CGCG 2 cut(s) 24, 46
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 3 cut(s) 79, 701, 2485
BstMAI GTCTC 2 cut(s) 82, 156
BstMCI CGRYCG 1 cut(s) 193
BstNI CCWGG 4 cut(s) 573, 1620, 1767, 2288
BstNSI RCATGY 3 cut(s) 982, 2576, 2674
BstPI GGTNACC 1 cut(s) 1328
BstSCI CCNGG 6 cut(s) 187, 571, 943, 1618, 1765, 2286
BstSFI CTRYAG 2 cut(s) 880, 1452
BstUI CGCG 2 cut(s) 24, 46
BstV2I GAAGAC 4 cut(s) 342, 1133, 1968, 2112
BstX2I RGATCY 3 cut(s) 368, 833, 1826
BstYI RGATCY 3 cut(s) 368, 833, 1826
BstZ17I GTATAC 1 cut(s) 1180
BsuI GTATCC 4 cut(s) 1176, 1634, 1927, 2088
BsuRI GGCC 2 cut(s) 943, 2230
BtgI CCRYGG 2 cut(s) 243, 1076
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 5 cut(s) 232, 514, 737, 2209, 2405
BtsIMutI CAGTG 5 cut(s) 324, 715, 726, 1215, 1600
BveI ACCTGC 1 cut(s) 2466
Cac8I GCNNGC 8 cut(s) 274, 400, 619, 1362, 1683, 2672, 2676, 2691
CaiI CAGNNNCTG 2 cut(s) 2147, 2554
CfoI GCGC 3 cut(s) 79, 701, 2485
Cfr13I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
CseI GACGC 3 cut(s) 30, 239, 740
Csp6I GTAC 5 cut(s) 668, 1542, 1727, 1763, 2441
CviQI GTAC 5 cut(s) 668, 1542, 1727, 1763, 2441
DinI GGCGCC 1 cut(s) 78
Eam1104I CTCTTC 3 cut(s) 258, 642, 2370
EarI CTCTTC 3 cut(s) 258, 642, 2370
EciI GGCGGA 3 cut(s) 30, 54, 320
Eco130I CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
Eco24I GRGCYC 2 cut(s) 879, 2514
Eco32I GATATC 1 cut(s) 2568
Eco47I GGWCC 3 cut(s) 1507, 1710, 2108
Eco57I CTGAAG 5 cut(s) 239, 1778, 1896, 2186, 2690
Eco72I CACGTG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 1328
EcoNI CCTNNNNNAGG 2 cut(s) 270, 2237
EcoO109I RGGNCCY 2 cut(s) 1507, 2229
EcoO65I GGTNACC 1 cut(s) 1328
EcoRI GAATTC 2 cut(s) 718, 2137
EcoRII CCWGG 4 cut(s) 571, 1618, 1765, 2286
EcoRV GATATC 1 cut(s) 2568
EcoT14I CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
EcoT22I ATGCAT 1 cut(s) 1662
EcoT38I GRGCYC 2 cut(s) 879, 2514
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
ErhI CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
FalI AAGNNNNNCTT 4 cut(s) 514, 546, 621, 653
FaqI GGGAC 4 cut(s) 812, 1094, 1462, 2121
FauI CCCGC 2 cut(s) 288, 1357
FauNDI CATATG 1 cut(s) 1066
FblI GTMKAC 1 cut(s) 1179
FokI GGATG 5 cut(s) 239, 521, 724, 2196, 2392
FriOI GRGCYC 2 cut(s) 879, 2514
FspBI CTAG 8 cut(s) 465, 618, 962, 1206, 1559, 1812, 1860, 2154
FspI TGCGCA 1 cut(s) 2484
GlaI GCGC 3 cut(s) 78, 700, 2484
GsaI CCCAGC 1 cut(s) 2299
GsuI CTGGAG 1 cut(s) 1299
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 2 cut(s) 943, 2230
HapII CCGG 3 cut(s) 189, 945, 2339
HgaI GACGC 3 cut(s) 30, 239, 740
HhaI GCGC 3 cut(s) 79, 701, 2485
Hin1I GRCGYC 1 cut(s) 77
Hin6I GCGC 3 cut(s) 77, 699, 2483
HinP1I GCGC 3 cut(s) 77, 699, 2483
HinfI GANTC 7 cut(s) 106, 860, 1133, 1300, 1343, 1401, 1946
HpaII CCGG 3 cut(s) 189, 945, 2339
Hpy166II GTNNAC 5 cut(s) 297, 668, 1025, 1180, 1932
Hpy8I GTNNAC 5 cut(s) 297, 668, 1025, 1180, 1932
HpyAV CCTTC 9 cut(s) 214, 496, 708, 1439, 1498, 1753, 1920, 2310, 2645
HpyCH4III ACNGT 2 cut(s) 119, 710
HpyCH4IV ACGT 5 cut(s) 142, 328, 352, 1027, 1095
HpySE526I ACGT 5 cut(s) 142, 328, 352, 1027, 1095
Hsp92I GRCGYC 1 cut(s) 77
HspAI GCGC 3 cut(s) 77, 699, 2483
KasI GGCGCC 1 cut(s) 76
KpnI GGTACC 1 cut(s) 1766
LguI GCTCTTC 2 cut(s) 258, 642
LmnI GCTCC 8 cut(s) 195, 687, 739, 807, 1112, 2206, 2341, 2391
LweI GCATC 6 cut(s) 710, 837, 1618, 1788, 2218, 2369
MaeI CTAG 8 cut(s) 465, 618, 962, 1206, 1559, 1812, 1860, 2154
MaeII ACGT 5 cut(s) 142, 328, 352, 1027, 1095
MaeIII GTNAC 4 cut(s) 143, 1271, 1328, 2500
MbiI CCGCTC 2 cut(s) 36, 283
MfeI CAATTG 1 cut(s) 2354
MflI RGATCY 3 cut(s) 368, 833, 1826
MhlI GDGCHC 4 cut(s) 400, 879, 1486, 2514
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 3 cut(s) 173, 1842, 2017
Mph1103I ATGCAT 1 cut(s) 1662
MroXI GAANNNNTTC 2 cut(s) 718, 1400
MseI TTAA 6 cut(s) 216, 521, 812, 1098, 1379, 1518
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 2554
MspI CCGG 3 cut(s) 189, 945, 2339
MspR9I CCNGG 6 cut(s) 189, 573, 945, 1620, 1767, 2288
MunI CAATTG 1 cut(s) 2354
Mva1269I GAATGC 2 cut(s) 2265, 2394
MvaI CCWGG 4 cut(s) 573, 1620, 1767, 2288
MvnI CGCG 2 cut(s) 24, 46
NarI GGCGCC 1 cut(s) 77
NciI CCSGG 2 cut(s) 189, 945
NcoI CCATGG 2 cut(s) 243, 1076
NdeI CATATG 1 cut(s) 1066
NheI GCTAGC 1 cut(s) 617
NlaIV GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
NmuCI GTSAC 3 cut(s) 143, 1328, 2500
NsbI TGCGCA 1 cut(s) 2484
NsiI ATGCAT 1 cut(s) 1662
NspI RCATGY 3 cut(s) 982, 2576, 2674
PaeI GCATGC 1 cut(s) 2674
PaeR7I CTCGAG 1 cut(s) 85
PciI ACATGT 2 cut(s) 978, 2572
PciSI GCTCTTC 2 cut(s) 258, 642
PctI GAATGC 2 cut(s) 2265, 2394
PdmI GAANNNNTTC 2 cut(s) 718, 1400
PfeI GAWTC 6 cut(s) 106, 860, 1300, 1343, 1401, 1946
PflFI GACNNNGTC 1 cut(s) 1132
PflMI CCANNNNNTGG 1 cut(s) 1599
PfoI TCCNGGA 1 cut(s) 2286
PleI GAGTC 1 cut(s) 1141
PluTI GGCGCC 1 cut(s) 80
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 1 cut(s) 1141
Ppu21I YACGTR 2 cut(s) 329, 1028
PpuMI RGGWCCY 1 cut(s) 1507
PscI ACATGT 2 cut(s) 978, 2572
Psp1406I AACGTT 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 1507
Psp6I CCWGG 4 cut(s) 571, 1618, 1765, 2286
PspCI CACGTG 1 cut(s) 329
PspEI GGTNACC 1 cut(s) 1328
PspFI CCCAGC 1 cut(s) 2295
PspGI CCWGG 4 cut(s) 571, 1618, 1765, 2286
PspN4I GGNNCC 5 cut(s) 78, 1114, 1764, 2109, 2231
PspPI GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
PspPPI RGGWCCY 1 cut(s) 1507
PstNI CAGNNNCTG 2 cut(s) 2147, 2554
PsuI RGATCY 3 cut(s) 368, 833, 1826
PsyI GACNNNGTC 1 cut(s) 1132
PvuII CAGCTG 1 cut(s) 2554
RsaI GTAC 5 cut(s) 669, 1543, 1728, 1764, 2442
RsaNI GTAC 5 cut(s) 668, 1542, 1727, 1763, 2441
RseI CAYNNNNRTG 1 cut(s) 242
SapI GCTCTTC 2 cut(s) 258, 642
SaqAI TTAA 6 cut(s) 216, 521, 812, 1098, 1379, 1518
Sau96I GGNCC 5 cut(s) 942, 1507, 1710, 2108, 2229
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 6 cut(s) 189, 573, 945, 1620, 1767, 2288
SduI GDGCHC 4 cut(s) 400, 879, 1486, 2514
SfaNI GCATC 6 cut(s) 710, 837, 1618, 1788, 2218, 2369
SfcI CTRYAG 2 cut(s) 880, 1452
SfoI GGCGCC 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 85
SinI GGWCC 3 cut(s) 1507, 1710, 2108
SlaI CTCGAG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 85, 2538
SmoI CTYRAG 2 cut(s) 85, 2538
SphI GCATGC 1 cut(s) 2674
SspDI GGCGCC 1 cut(s) 76
SspMI CTAG 8 cut(s) 465, 618, 962, 1206, 1559, 1812, 1860, 2154
StyD4I CCNGG 6 cut(s) 187, 571, 943, 1618, 1765, 2286
StyI CCWWGG 6 cut(s) 243, 300, 1076, 1334, 1980, 2462
TaaI ACNGT 2 cut(s) 119, 710
TaiI ACGT 5 cut(s) 145, 331, 355, 1030, 1098
TaqI TCGA 4 cut(s) 86, 291, 595, 787
TaqII GACCGA 1 cut(s) 2206
TatI WGTACW 3 cut(s) 667, 1541, 2440
TauI GCSGC 4 cut(s) 39, 49, 69, 82
TfiI GAWTC 6 cut(s) 106, 860, 1300, 1343, 1401, 1946
Tru1I TTAA 6 cut(s) 216, 521, 812, 1098, 1379, 1518
Tru9I TTAA 6 cut(s) 216, 521, 812, 1098, 1379, 1518
TscAI CASTG 5 cut(s) 324, 715, 733, 1222, 1600
TseFI GTSAC 3 cut(s) 143, 1328, 2500
Tsp45I GTSAC 3 cut(s) 143, 1328, 2500
TspGWI ACGGA 1 cut(s) 1917
TspRI CASTG 5 cut(s) 324, 715, 733, 1222, 1600
Tth111I GACNNNGTC 1 cut(s) 1132
Van91I CCANNNNNTGG 1 cut(s) 1599
VpaK11BI GGWCC 3 cut(s) 1507, 1710, 2108
XagI CCTNNNNNAGG 2 cut(s) 270, 2237
XapI RAATTY 6 cut(s) 512, 718, 901, 1381, 2137, 2477
XbaI TCTAGA 2 cut(s) 961, 1558
XceI RCATGY 3 cut(s) 982, 2576, 2674
XhoI CTCGAG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 1179
XmnI GAANNNNTTC 2 cut(s) 718, 1400
XspI CTAG 8 cut(s) 465, 618, 962, 1206, 1559, 1812, 1860, 2154
Zsp2I ATGCAT 1 cut(s) 1662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.