MD17G1129300.v1.1

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012811
Physical Location & Seq
Forward (+)
11375580 .. 11378217
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1129300.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGAAATTATGAAACAAGAATGTTGCCCCAATTCCGAAGCCTGGAGATGTTGGAGCTCAAGTTTAGCGATTAGAATATCAGGAGACCAAGCTGCAATTTTGGGTTGTGGGTTCTTTGGAGCTCAAGACACCCTTCACGATGATAGGGGCCGCCATTACTTCAAGGATTGCTACATCCAGGGCTCCATTGATTTCATCTTTGGCAATGGAAGATCATTATATGAGAGTATGGCTGGGACTATATTCTATGGAGAATACAATAACTCAGGTGCGGGAGCAAATATGAGCTTGCGTGCGCCTTACGTACAGAAGCTGAATGACACACAAGCTTCTCTTTTTCTTAATGTGTCTTTCATTGACGGGGGAGATTGGTTGCAATCAGTCATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

131

Amino Acids

14.45

Weight (kDa)

4.69

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 20 - 74 2.1e-13 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012811)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05310
fragaria_vesca FvH4_6g39490
malus_domestica MD09G1139900.v1.1 MD17G1129300.v1.1
prunus_persica Prupe.3G185700_v2.0.a1 Prupe.3G185700_v2.0.a1
pyrus_communis pycom09g06080 pycom17g12170
rosa_chinensis RchiOBHm_Chr2g0153521
rosa_laevigata RLG00000020705
rosa_multiflora Rmu_sc0003976.1_g000011
rosa_roxburghii Rroxscaffold_2G00094960
rosa_rugosa Rorug02G0438800
rosa_samantha Rh2AG502700 Rh2BG513500 Rh2CG488500 Rh2DG525200
rosa_wichuraiana Rw2G041280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 151, 272
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 1 cut(s) 163
AjnI CCWGG 2 cut(s) 41, 177
AluBI AGCT 6 cut(s) 57, 92, 122, 288, 313, 329
AluI AGCT 6 cut(s) 57, 92, 122, 288, 313, 329
Alw21I GWGCWC 2 cut(s) 59, 124
Alw26I GTCTC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 148
BanII GRGCYC 3 cut(s) 59, 124, 185
Bbv12I GWGCWC 2 cut(s) 59, 124
BbvI GCAGC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 43, 179
BcoDI GTCTC 1 cut(s) 78
BisI GCNGC 2 cut(s) 93, 151
BlsI GCNGC 2 cut(s) 94, 152
Bme1390I CCNGG 2 cut(s) 43, 179
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 149, 184
BmrFI CCNGG 2 cut(s) 43, 179
BpmI CTGGAG 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 43, 108
BsaAI YACGTR 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 2 cut(s) 43, 179
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 59, 124
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 150
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 3 cut(s) 59, 124, 185
Bsp143I GATC 1 cut(s) 212
BspACI CCGC 2 cut(s) 151, 272
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 149, 184
BspTNI GGTCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 43, 179
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 290, 294
BstDEI CTNAG 1 cut(s) 265
BstF5I GGATG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 212
BstNI CCWGG 2 cut(s) 43, 179
BstSCI CCNGG 2 cut(s) 41, 177
BstSNI TACGTA 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 290, 294
CaiI CAGNNNCTG 1 cut(s) 313
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 305
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Ecl136II GAGCTC 2 cut(s) 57, 122
Eco105I TACGTA 1 cut(s) 304
Eco24I GRGCYC 3 cut(s) 59, 124, 185
Eco31I GGTCTC 1 cut(s) 78
Eco53kI GAGCTC 2 cut(s) 57, 122
EcoICRI GAGCTC 2 cut(s) 57, 122
EcoRII CCWGG 2 cut(s) 41, 177
EcoT38I GRGCYC 3 cut(s) 59, 124, 185
FaiI YATR 7 cut(s) 11, 220, 222, 230, 242, 249, 284
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 318, 350
FaqI GGGAC 1 cut(s) 250
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 93, 151
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 3 cut(s) 59, 124, 185
Fsp4HI GCNGC 2 cut(s) 93, 151
GlaI GCGC 1 cut(s) 297
GluI GCNGC 2 cut(s) 93, 151
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 1 cut(s) 150
HhaI GCGC 1 cut(s) 298
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 3 cut(s) 81, 125, 137
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 95, 376
HpyF3I CTNAG 1 cut(s) 265
HpySE526I ACGT 1 cut(s) 303
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 4 cut(s) 54, 119, 188, 275
LpnPI CCDG 7 cut(s) 28, 55, 66, 164, 191, 219, 252
Lsp1109I GCAGC 1 cut(s) 79
MaeII ACGT 1 cut(s) 303
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 1 cut(s) 222
MhlI GDGCHC 3 cut(s) 59, 124, 185
MluCI AATT 3 cut(s) 6, 31, 96
MmeI TCCRAC 1 cut(s) 32
MseI TTAA 2 cut(s) 342, 391
MspR9I CCNGG 2 cut(s) 43, 179
MvaI CCWGG 2 cut(s) 43, 179
NdeII GATC 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 149, 184
PkrI GCNGC 2 cut(s) 94, 152
Ppu21I YACGTR 1 cut(s) 304
Psp124BI GAGCTC 2 cut(s) 59, 124
Psp6I CCWGG 2 cut(s) 41, 177
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 41, 177
PspN4I GGNNCC 2 cut(s) 149, 184
PspPI GGNCC 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SacI GAGCTC 2 cut(s) 59, 124
SaqAI TTAA 2 cut(s) 342, 391
SatI GCNGC 2 cut(s) 93, 151
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 43, 179
SduI GDGCHC 3 cut(s) 59, 124, 185
SetI ASST 8 cut(s) 59, 94, 124, 271, 290, 306, 315, 331
SmlI CTYRAG 2 cut(s) 58, 123
SmoI CTYRAG 2 cut(s) 58, 123
SnaBI TACGTA 1 cut(s) 304
Sse9I AATT 3 cut(s) 6, 31, 96
SsiI CCGC 2 cut(s) 151, 272
SstI GAGCTC 2 cut(s) 59, 124
StyD4I CCNGG 2 cut(s) 41, 177
TaiI ACGT 1 cut(s) 306
TasI AATT 3 cut(s) 6, 31, 96
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 342, 391
Tru9I TTAA 2 cut(s) 342, 391
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 26, 184, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.