Prupe.3G185700_v2.0.a1

pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012811
Physical Location & Seq
Reverse (-)
20027970 .. 20030182
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G185700.1

Sequence Viewer

Length: 1209 bp
ATGAGCCTCAAAACCACATGCCTTACATATTTTGTTGCCATCTTTGCAGTCTTATTGGCATCTAGACGTGTCATTGATCCAAACTCATCACCCCTCAAACACATTGTGGATCTTAGTCTGGCCACAACTTCATCAGTGCCTAGTAATATTATTTCTTATCTCATCCCAAACCACATTGGCAGACATCACAAAAAGAAAGACAATGGAACCCTAGGATCCATCTGTGATGACTTCCCACGTGGCGTTCCTCCCCCAGACACCAACAAAACCTCCTACCTTTGTGTCGATCGAAATGGCTGTTGTAATTTCACACTGGTTCAAGCAGCTGTTGATGCAGCTCCAGCTCTTAGCCAGAAAAGAACAATAATTTGGATTAATAATGGGATTTACTATGAGAAAATCTTGATTCCGAAAAACAAACCCAATATAACATTTCAAGGACAAGGGTATGAATCGACTGCAATTGCGTGGAATGACACAGCAAATTCATCTCATGGCACATTTTATAGCGGTTCTGTTCAAGTTTTTGCTGACAACTTTGTTGCTAAGAACATAAGCTTCATGAAATGGGAATTGTATAAAAAGAATTTGGCTCCAATTCCGAAGCCTGGTGATTTTGGAGCTCAAGCTGTAGCGATTAGAATATCAGGAGACCAAGCTGCGTTTTTGGGTTGCGGATTCTTTGGAGCCCAAGACACCCTTCATGATGATAAGGGCCGCCATTACTTTAAGGATTGCTATGTACAGGGCTCCATTGATTTCATCTTTGGCAATGGAAGGTCACTCTATGAGAATTGCCAGTTGATCTCCATTGCAAATCCACTCCCTCCAGAATCAAGGAACGTAAACGGCGCCATCACAGCGCACGGCAGAACTTCCAAGGACGACAACACTGGGTTTGCATTTGTCAACTGCTTTATCGGAGGGACTGGAAGAGTGTGGTTGGGTCGAGCATGGAGGCCTTTTTCACGAGTGGTTTTCGTCAACACAATAATGGCTGACATTATAGCTCCTGAAGGCTGGAACGATTTCAACGACCCAACAAGAGACCAGACCATATTCTATGGAGAATACAATTGTTCTGGTGCAGGAGCTAATATGACCATGCGAGCGCCTTTTGTACAGAAATTGAATGACACAGAAGCTTCAACTTTTCTGAACGTTTCTTGGATTGATGGAGGGGATTGGTTGCAGCGCAATATCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

403

Amino Acids

44.36

Weight (kDa)

8.26

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012811)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05310
fragaria_vesca FvH4_6g39490
malus_domestica MD09G1139900.v1.1 MD17G1129300.v1.1
prunus_persica Prupe.3G185700_v2.0.a1 Prupe.3G185700_v2.0.a1
pyrus_communis pycom09g06080 pycom17g12170
rosa_chinensis RchiOBHm_Chr2g0153521
rosa_laevigata RLG00000020705
rosa_multiflora Rmu_sc0003976.1_g000011
rosa_roxburghii Rroxscaffold_2G00094960
rosa_rugosa Rorug02G0438800
rosa_samantha Rh2AG502700 Rh2BG513500 Rh2CG488500 Rh2DG525200
rosa_wichuraiana Rw2G041280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 851
AciI CCGC 3 cut(s) 510, 675, 718
AclI AACGTT 1 cut(s) 1161
AclWI GGATC 4 cut(s) 71, 117, 210, 223
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 484, 586
AcuI CTGAAG 1 cut(s) 1035
AcvI CACGTG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 852
AdeI CACNNNGTG 1 cut(s) 106
AfaI GTAC 2 cut(s) 744, 1122
AfiI CCNNNNNNNGG 1 cut(s) 608
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 6 cut(s) 320, 437, 521, 1033, 1132, 1149
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 1 cut(s) 607
AjuI GAANNNNNNNTTGG 4 cut(s) 352, 384, 684, 716
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 645, 1041
AlwI GGATC 4 cut(s) 71, 117, 210, 223
AoxI GGCC 3 cut(s) 120, 715, 959
ApeKI GCWGC 4 cut(s) 323, 335, 659, 1192
ApoI RAATTY 2 cut(s) 484, 586
AseI ATTAAT 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 1028
AspA2I CCTAGG 1 cut(s) 211
AspLEI GCGC 4 cut(s) 854, 865, 1114, 1197
AspS9I GGNCC 1 cut(s) 715
AsuHPI GGTGA 2 cut(s) 81, 623
AvrII CCTAGG 1 cut(s) 211
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 851
BanII GRGCYC 3 cut(s) 625, 691, 752
BauI CACGAG 1 cut(s) 969
BbrPI CACGTG 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 4 cut(s) 335, 347, 646, 1204
BccI CCATC 4 cut(s) 47, 227, 863, 1169
BceAI ACGGC 2 cut(s) 865, 883
BciT130I CCWGG 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 645, 1041
BfaI CTAG 3 cut(s) 63, 141, 212
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 2 cut(s) 855, 1115
BisI GCNGC 5 cut(s) 324, 336, 660, 718, 1193
BlnI CCTAGG 1 cut(s) 211
BlsI GCNGC 5 cut(s) 325, 337, 661, 719, 1194
Bme1390I CCNGG 1 cut(s) 609
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 6 cut(s) 208, 217, 594, 688, 751, 853
BmrFI CCNGG 1 cut(s) 609
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 2 cut(s) 68, 322
BmuI ACTGGG 1 cut(s) 903
BpmI CTGGAG 2 cut(s) 324, 813
BpuEI CTTGAG 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 852
BsaI GGTCTC 2 cut(s) 645, 1041
BsaJI CCNNGG 2 cut(s) 211, 879
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse1I ACTGG 4 cut(s) 318, 799, 898, 934
Bse3DI GCAATG 2 cut(s) 778, 810
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 211, 879
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMI GCAATG 2 cut(s) 778, 810
BseNI ACTGG 4 cut(s) 318, 799, 898, 934
BseXI GCAGC 4 cut(s) 335, 347, 646, 1204
BsgI GTGCAG 1 cut(s) 1107
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 3 cut(s) 122, 717, 961
BshNI GGYRCC 1 cut(s) 851
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 625
BslFI GGGAC 1 cut(s) 940
BslI CCNNNNNNNGG 1 cut(s) 608
BsmAI GTCTC 2 cut(s) 645, 1041
BsmFI GGGAC 1 cut(s) 940
BsnI GGCC 3 cut(s) 122, 717, 961
Bso31I GGTCTC 2 cut(s) 645, 1041
Bsp1286I GDGCHC 3 cut(s) 625, 691, 752
Bsp1407I TGTACA 2 cut(s) 742, 1120
Bsp143I GATC 5 cut(s) 76, 109, 215, 286, 804
BspACI CCGC 3 cut(s) 510, 675, 718
BspANI GGCC 3 cut(s) 122, 717, 961
BspHI TCATGA 2 cut(s) 561, 703
BspLI GGNNCC 6 cut(s) 208, 217, 594, 688, 751, 853
BspPI GGATC 4 cut(s) 71, 117, 210, 223
BspT107I GGYRCC 1 cut(s) 851
BspTNI GGTCTC 2 cut(s) 645, 1041
BsrDI GCAATG 2 cut(s) 778, 810
BsrGI TGTACA 2 cut(s) 742, 1120
BsrI ACTGG 4 cut(s) 318, 799, 898, 934
BssECI CCNNGG 2 cut(s) 211, 879
BssMI GATC 5 cut(s) 76, 109, 215, 286, 804
BssNI GRCGYC 1 cut(s) 852
BssSI CACGAG 1 cut(s) 969
BssT1I CCWWGG 2 cut(s) 211, 879
Bst2BI CACGAG 1 cut(s) 969
Bst2UI CCWGG 1 cut(s) 609
Bst6I CTCTTC 1 cut(s) 928
BstACI GRCGYC 1 cut(s) 852
BstAUI TGTACA 2 cut(s) 742, 1120
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 3 cut(s) 113, 347, 546
BstF5I GGATG 1 cut(s) 162
BstH2I RGCGCY 2 cut(s) 855, 1115
BstHHI GCGC 4 cut(s) 854, 865, 1114, 1197
BstKTI GATC 5 cut(s) 79, 112, 218, 289, 807
BstMAI GTCTC 2 cut(s) 645, 1041
BstMBI GATC 5 cut(s) 76, 109, 215, 286, 804
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 4 cut(s) 44, 332, 341, 860
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 4 cut(s) 335, 347, 646, 1204
BstX2I RGATCY 2 cut(s) 109, 215
BstYI RGATCY 2 cut(s) 109, 215
BsuRI GGCC 3 cut(s) 122, 717, 961
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 3 cut(s) 141, 311, 891
Cac8I GCNNGC 1 cut(s) 1110
CciI TCATGA 2 cut(s) 561, 703
CfoI GCGC 4 cut(s) 854, 865, 1114, 1197
Cfr13I GGNCC 1 cut(s) 715
Csp6I GTAC 2 cut(s) 743, 1121
CviAII CATG 6 cut(s) 18, 494, 562, 704, 954, 1105
CviQI GTAC 2 cut(s) 743, 1121
DdeI CTNAG 3 cut(s) 113, 347, 546
DinI GGCGCC 1 cut(s) 853
DpnI GATC 5 cut(s) 78, 111, 217, 288, 806
DpnII GATC 5 cut(s) 76, 109, 215, 286, 804
DraIII CACNNNGTG 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 928
EarI CTCTTC 1 cut(s) 928
Ecl136II GAGCTC 1 cut(s) 623
Eco130I CCWWGG 2 cut(s) 211, 879
Eco147I AGGCCT 1 cut(s) 961
Eco24I GRGCYC 3 cut(s) 625, 691, 752
Eco31I GGTCTC 2 cut(s) 645, 1041
Eco53kI GAGCTC 1 cut(s) 623
Eco57I CTGAAG 1 cut(s) 1035
Eco72I CACGTG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 211, 879
EcoT38I GRGCYC 3 cut(s) 625, 691, 752
EgeI GGCGCC 1 cut(s) 853
EheI GGCGCC 1 cut(s) 853
ErhI CCWWGG 2 cut(s) 211, 879
FaeI CATG 6 cut(s) 21, 497, 565, 707, 957, 1108
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 940
FatI CATG 6 cut(s) 17, 493, 561, 703, 953, 1104
Fnu4HI GCNGC 5 cut(s) 324, 336, 660, 718, 1193
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 3 cut(s) 625, 691, 752
Fsp4HI GCNGC 5 cut(s) 324, 336, 660, 718, 1193
FspBI CTAG 3 cut(s) 63, 141, 212
GlaI GCGC 4 cut(s) 853, 864, 1113, 1196
GluI GCNGC 5 cut(s) 324, 336, 660, 718, 1193
GsuI CTGGAG 2 cut(s) 324, 813
HaeII RGCGCY 2 cut(s) 855, 1115
HaeIII GGCC 3 cut(s) 122, 717, 961
HhaI GCGC 4 cut(s) 854, 865, 1114, 1197
Hin1I GRCGYC 1 cut(s) 852
Hin1II CATG 6 cut(s) 21, 497, 565, 707, 957, 1108
Hin6I GCGC 4 cut(s) 852, 863, 1112, 1195
HinP1I GCGC 4 cut(s) 852, 863, 1112, 1195
HincII GTYRAC 2 cut(s) 910, 985
HindII GTYRAC 2 cut(s) 910, 985
HindIII AAGCTT 2 cut(s) 556, 1143
HinfI GANTC 4 cut(s) 406, 452, 678, 833
HphI GGTGA 2 cut(s) 81, 623
Hpy166II GTNNAC 3 cut(s) 847, 910, 985
Hpy188I TCNGA 4 cut(s) 411, 603, 923, 1158
Hpy188III TCNNGA 8 cut(s) 63, 403, 562, 648, 704, 830, 969, 1013
Hpy8I GTNNAC 3 cut(s) 847, 910, 985
HpyAV CCTTC 3 cut(s) 710, 771, 1010
HpyCH4IV ACGT 4 cut(s) 67, 238, 843, 1161
HpyCH4V TGCA 7 cut(s) 47, 335, 461, 815, 902, 1088, 1192
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 332, 341, 860
HpyF3I CTNAG 3 cut(s) 113, 347, 546
HpySE526I ACGT 4 cut(s) 67, 238, 843, 1161
Hsp92I GRCGYC 1 cut(s) 852
Hsp92II CATG 6 cut(s) 21, 497, 565, 707, 957, 1108
HspAI GCGC 4 cut(s) 852, 863, 1112, 1195
KasI GGCGCC 1 cut(s) 851
Kzo9I GATC 5 cut(s) 76, 109, 215, 286, 804
LmnI GCTCC 7 cut(s) 343, 598, 620, 686, 755, 1015, 1091
Lsp1109I GCAGC 4 cut(s) 335, 347, 646, 1204
LweI GCATC 2 cut(s) 68, 322
MaeI CTAG 3 cut(s) 63, 141, 212
MaeII ACGT 4 cut(s) 67, 238, 843, 1161
MaeIII GTNAC 1 cut(s) 780
MalI GATC 5 cut(s) 78, 111, 217, 288, 806
MboI GATC 5 cut(s) 76, 109, 215, 286, 804
MboII GAAGA 1 cut(s) 945
MfeI CAATTG 2 cut(s) 462, 1075
MflI RGATCY 2 cut(s) 109, 215
MhlI GDGCHC 3 cut(s) 625, 691, 752
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
Mly113I GGCGCC 1 cut(s) 852
MnlI CCTC 8 cut(s) 17, 104, 258, 280, 837, 917, 951, 1172
Mox20I TGGCCA 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 1028
MscI TGGCCA 1 cut(s) 122
MseI TTAA 2 cut(s) 375, 729
MslI CAYNNNNRTG 1 cut(s) 992
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 609
MunI CAATTG 2 cut(s) 462, 1075
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 44, 332, 341, 860
NarI GGCGCC 1 cut(s) 852
NdeII GATC 5 cut(s) 76, 109, 215, 286, 804
NlaIII CATG 6 cut(s) 21, 497, 565, 707, 957, 1108
NlaIV GGNNCC 6 cut(s) 208, 217, 594, 688, 751, 853
NmuCI GTSAC 1 cut(s) 780
NspI RCATGY 1 cut(s) 21
PagI TCATGA 2 cut(s) 561, 703
PceI AGGCCT 1 cut(s) 961
PcsI WCGNNNNNNNCGW 1 cut(s) 1032
PdmI GAANNNNTTC 1 cut(s) 1028
PfeI GAWTC 4 cut(s) 406, 452, 678, 833
PkrI GCNGC 5 cut(s) 325, 337, 661, 719, 1194
Ple19I CGATCG 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 855
PmaCI CACGTG 1 cut(s) 239
PmlI CACGTG 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 239
PshBI ATTAAT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 625
Psp1406I AACGTT 1 cut(s) 1161
Psp6I CCWGG 1 cut(s) 607
PspCI CACGTG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 6 cut(s) 208, 217, 594, 688, 751, 853
PspPI GGNCC 1 cut(s) 715
PsuI RGATCY 2 cut(s) 109, 215
PvuI CGATCG 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 744, 1122
RsaNI GTAC 2 cut(s) 743, 1121
RseI CAYNNNNRTG 1 cut(s) 992
SacI GAGCTC 1 cut(s) 625
SaqAI TTAA 2 cut(s) 375, 729
SatI GCNGC 5 cut(s) 324, 336, 660, 718, 1193
Sau3AI GATC 5 cut(s) 76, 109, 215, 286, 804
Sau96I GGNCC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 3 cut(s) 625, 691, 752
SfaNI GCATC 2 cut(s) 68, 322
SfcI CTRYAG 1 cut(s) 630
SfoI GGCGCC 1 cut(s) 853
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
SseBI AGGCCT 1 cut(s) 961
SsiI CCGC 3 cut(s) 510, 675, 718
SspDI GGCGCC 1 cut(s) 851
SspI AATATT 1 cut(s) 148
SspMI CTAG 3 cut(s) 63, 141, 212
SstI GAGCTC 1 cut(s) 625
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 2 cut(s) 211, 879
TaiI ACGT 4 cut(s) 70, 241, 846, 1164
TaqI TCGA 4 cut(s) 285, 289, 455, 949
TatI WGTACW 2 cut(s) 742, 1120
TauI GCSGC 1 cut(s) 720
TfiI GAWTC 4 cut(s) 406, 452, 678, 833
Tru1I TTAA 2 cut(s) 375, 729
Tru9I TTAA 2 cut(s) 375, 729
TscAI CASTG 3 cut(s) 141, 318, 898
TseFI GTSAC 1 cut(s) 780
TseI GCWGC 4 cut(s) 323, 335, 659, 1192
Tsp45I GTSAC 1 cut(s) 780
TspDTI ATGAA 7 cut(s) 120, 465, 477, 550, 578, 692, 751
TspRI CASTG 3 cut(s) 141, 318, 898
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 2 cut(s) 484, 586
XbaI TCTAGA 1 cut(s) 62
XceI RCATGY 1 cut(s) 21
XmaJI CCTAGG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 1028
XspI CTAG 3 cut(s) 63, 141, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.