MD17G1155800.v1.1

ATPase 10, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014890
Physical Location & Seq
Reverse (-)
14833669 .. 14840018
6350 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1155800.v1.1.491

Sequence Viewer

Length: 2853 bp
ATGGCTGAAGATCTGGAGAAACCATTGTTGGATCCGGTGAATTTCAATCGGGATGGTATCGATTTGGAACGCTTGCCATTGGGAGAAGTCTTCGAGCAACTGAGGACATCACCACAAGGTCTTTCAACCGAAGATGCTGAAGCCAGATTGGTGATTTTTGGCTTTAACAAGCTTGAAGAGAAGACTGAGAACAAATTTTTGAAGTTCCTTGGTTTTATGTGGAACCCCTTGTCATGGGTTATGGAAGCTGCAGCTATAATGGCTCTTGTCCTCGCTAATGGCGGAGGTGAGGGTCCTGACTGGCAGGACTTTGTAGGGATTGTTATCCTGCTTATCATCAACTCAACGATTAGTTTCATAGAGGAGAATAATGCAGGAAATGCTGCATCAGCTCTAATGGATCGCTTAGCTCCGAAGACAAGGGTTCTCAGAGATGGGCGCTGGACAGAGCAAGATGCAGCTATTTTAGTACCAGGTGATATAATTAGCATTAAGCTCGGGGACATCATTCCGGCTGATGCTCGTCTGCTTGAAGGAGACGCGCTGAAAGTTGACCAGTCAGCTCTTACAGGAGAGTCACTACCTGTCACCAAGAAGACAGGTGATGAAGTATTTTCTGGTTCAACATGTAAACATGGAGAGATTGAAGCTGTTGTGATCGCAACTGGAGTTAACTCCTTTTTCGGAAAGGCAGCACATTTGGTGGACTCCACTGAAGTTGTTGGACATTTCCAGCAGGTCCTTACTGCCATTGGGAATTTCTGCATTTGCTCTATTGCTGTGGGAATGATTCTTGAAATCATTGTCATGTTCCCAATACAGCACCGCTCTTACAGGGATGGGATCAACAACCTTCTTGTTCTCTTAATTGGAGGAATTCCGATTGCCATGCCAACGGTGTTATCTGTTACACTTGCCATTGGTTCTCATCGACTTTCTCAACAGGGTGCCATTACAAAAAGGATGACAGCAATTGAAGAGATGGCAGGAATGGATGTCCTCTGCAGTGACAAAACCGGAACTCTCACCCTGAATCGCCTAACAGTTGATAGAAACCTAGTCGAGGTTTTCAACAAAGATCTAGACAAAGACGCGGTTATCATGTTTGCAGCCAGAGCAGCTAGAATGGAGAACCAGGACGCTATTGATGCAGCCATCGTCAATATGCTTGGTGATCCAAAGGAGGCACGAGGAGGCATTACAGAAGTGCATTTTCTGCCCTTCAATCCGGTGGACAAGCGTACTGCTATTACATACATTGATTCAGAAGGTAACTGGTATCGGGCCAGCAAAGGAGCTCCGGAACAGATTCTAGATCTATGCCCGGAGAAAGACGAGATTGCTGGAAGGGTGCATTCAATTATTGACAAATTTGCTGAAAGGGGATTGCGGTCTCTTGGAGTTGCCTTTCAGGAAGTTCCAGAAAAAACTAAGGATAGCCCTGGAGGTCCATGGACATTTGCTGGGTTGTTGCCCTTGTTTGATCCTCCTAGGCATGACAGTGCTGAGACCATTCGTAGAGCGCTTAACCTTGGAGTCTGTGTAAAGATGATTACAGGTGATCAGTTGGCAATTGCAAAGGAGACAGGGCGGCGACTTGGTATGGGAACAAACATGTACCCCTCCTCTTCGTTATTAGGCCGCCACATAGAAGAACATGAAGCTCTTCCCGTGGATGAGTTGATTGAGAAGGCTGATGGCTTTGCTGGTGTCTTCCCTGAACACAAGTATGAAATCGTAAAGATTTTACAAGAAAAGAAGCATGTGGTTGGGATGACTGGAGATGGAGTTAACGATGCACCTGCTTTAAAGAAAGCAGACATTGGTATAGCAGTGGCAGATTCCACAGATGCTGCAAGAAGTGCTTCTGATATAGTCTTAACTGAGCCTGGATTGAGTGTGATTGTCAGTGCTGTCCTCACCAGTCGCGCTATATTCCAAAGAATGAAGAATTACACGATATATGCTGTCTCCATAACCATTAGGATTGTGCTTGGTTTTGTGCTTCTTGCATTGATCTGGGAATATGACTTCCCACCTTTCATGGTTCTGATTATAGCCATACTGAATGACGGAACCATCATGACAATTTCACAGGATCGCGTAAAGCCCTCCCCGAAGCCTGATAGTTGGAAGCTGAAGGAGATATTTGCTACTGGCATTGTCATTGGCACATACCTTGCTTTAGTTACTGTATTGTTCTACTGGGTTGTTGTTGACACTGACTTCTTCGAGAGAACCTTCAATGTAAGAGATTTATCGAGCAGTAGTGAGGAAGTTTCATCTGCTGTATATCTGCAAGTCAGTATCATCAGCCAGGCTCTCATATTTGTGACAAGAAGCCAGGGGTGGTCATTCCTTGAGAGGCCCGGAACTATGTTGATGTGCGCTTTCGTGGTGGCTCAACTGGTGGCAACTTTGATTGCTGTATATGCAACAATCAGCTTTGCATATATCAGCGGCATTGGATGGGGATGGGCCGGAATCATCTGGTTGTACAGTGTGATTTTCTACATTCCTTTGGACGTCATTAAATTTGCAATTCGCTATGCTTTGACCGGGGACGCTTGGAATCTGTTATTCGATAGAAAGACAGCTTTTACTAGTAAGAAAGACTATGGCAAGGAAGATAGGGCAGCTAAGTGGATACTTTCTCAGAAAAGCTTACAAGGGTTACAAGACTTTGAGATCAACAGGACCGGCAAGCGTTCTTCTTTGATTGCAGAACAGGCGAGGCGACGCGCTGAAATTGCCAGGCTCGGGGAGATACACACTCTGAGAGGACATGTAGAATCTGTACTGAGGCTCAAGAATTTGGACCTGAGTGCCATTCAATCAGCCCACACAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0006996 GO:0007033 GO:0007035 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0008553 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010214 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019725 GO:0019748 GO:0019829 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045851 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099131 GO:0099132 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

951

Amino Acids

104.38

Weight (kDa)

5.37

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 24 - 87 5.9e-13 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 136 - 235 8.4e-32 P-type ATPase actuator domain
Hydrolase PF00702 331 - 607 8.8e-13 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17260
fragaria_vesca FvH4_6g36241
malus_domestica MD09G1171300.v1.1 MD17G1155800.v1.1
prunus_persica Prupe.3G029800_v2.0.a1 Prupe.3G029800_v2.0.a1
pyrus_communis pycom09g08870 pycom17g14850
rosa_chinensis RchiOBHm_Chr2g0148211
rosa_laevigata RLG00000020327
rosa_multiflora Rmu_sc0002583.1_g000001
rosa_roxburghii Rroxscaffold_2G00098990
rosa_rugosa Rorug02G0404500
rosa_samantha Rh2BG476300 Rh2CG449900
rosa_wichuraiana Rw2G037760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1810
AatII GACGTC 1 cut(s) 2529
Acc36I ACCTGC 2 cut(s) 727, 1810
AccB1I GGYRCC 1 cut(s) 947
AccBSI CCGCTC 1 cut(s) 828
AccII CGCG 5 cut(s) 542, 1094, 1929, 2103, 2742
AccIII TCCGGA 1 cut(s) 1300
AciI CCGC 7 cut(s) 282, 826, 1094, 1390, 1591, 1642, 2460
AclWI GGATC 7 cut(s) 26, 39, 408, 851, 1169, 1478, 2106
AcsI RAATTY 7 cut(s) 40, 194, 757, 876, 1370, 2534, 2812
AcuI CTGAAG 4 cut(s) 27, 159, 735, 2159
AcyI GRCGYC 1 cut(s) 2526
AfaI GTAC 5 cut(s) 471, 1243, 1619, 2498, 2799
AfeI AGCGCT 1 cut(s) 1524
AfiI CCNNNNNNNGG 3 cut(s) 234, 1063, 2760
AflIII ACRYGT 3 cut(s) 626, 1614, 2785
AhlI ACTAGT 1 cut(s) 2603
AjnI CCWGG 7 cut(s) 472, 1134, 1441, 1888, 2316, 2343, 2753
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
Alw21I GWGCWC 1 cut(s) 1300
Alw26I GTCTC 5 cut(s) 531, 1398, 1502, 1577, 1975
AlwI GGATC 7 cut(s) 26, 39, 408, 851, 1169, 1478, 2106
AlwNI CAGNNNCTG 1 cut(s) 1853
Ama87I CYCGRG 2 cut(s) 497, 2759
Aor13HI TCCGGA 1 cut(s) 1300
Aor51HI AGCGCT 1 cut(s) 1524
AoxI GGCC 4 cut(s) 1284, 1639, 2366, 2478
ApoI RAATTY 7 cut(s) 40, 194, 757, 876, 1370, 2534, 2812
Asp700I GAANNNNTTC 3 cut(s) 1308, 1665, 1864
AspA2I CCTAGG 1 cut(s) 1490
AspLEI GCGC 6 cut(s) 441, 544, 1525, 1931, 2390, 2744
AspS9I GGNCC 8 cut(s) 293, 739, 1284, 1448, 2367, 2478, 2697, 2818
AsuC2I CCSGG 3 cut(s) 1325, 2370, 2560
AvaI CYCGRG 2 cut(s) 497, 2759
AvaII GGWCC 5 cut(s) 293, 739, 1448, 2697, 2818
AvrII CCTAGG 1 cut(s) 1490
BamHI GGATCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 1 cut(s) 1300
BauI CACGAG 1 cut(s) 1188
BbsI GAAGAC 5 cut(s) 82, 188, 422, 602, 1705
Bbv12I GWGCWC 1 cut(s) 1300
BcgI CGANNNNNNTGC 6 cut(s) 478, 512, 871, 905, 1784, 1818
BciT130I CCWGG 7 cut(s) 474, 1136, 1443, 1890, 2318, 2345, 2755
BciVI GTATCC 1 cut(s) 2640
BclI TGATCA 1 cut(s) 1561
BcnI CCSGG 3 cut(s) 1325, 2370, 2560
BcoDI GTCTC 5 cut(s) 531, 1398, 1502, 1577, 1975
BcuI ACTAGT 1 cut(s) 2603
BfaI CTAG 6 cut(s) 1058, 1082, 1122, 1313, 1491, 2604
BfmI CTRYAG 2 cut(s) 249, 1003
BfoI RGCGCY 2 cut(s) 442, 1526
BfuAI ACCTGC 2 cut(s) 727, 1810
BfuI GTATCC 1 cut(s) 2640
BglII AGATCT 3 cut(s) 10, 1078, 1315
BlnI CCTAGG 1 cut(s) 1490
BlpI GCTNAGC 1 cut(s) 406
Bme18I GGWCC 5 cut(s) 293, 739, 1448, 2697, 2818
BmeT110I CYCGRG 2 cut(s) 497, 2759
BmgT120I GGNCC 8 cut(s) 293, 739, 1284, 1448, 2367, 2478, 2697, 2818
BmiI GGNNCC 5 cut(s) 33, 224, 294, 949, 2077
BmrI ACTGGG 1 cut(s) 2215
BmsI GCATC 7 cut(s) 124, 395, 445, 508, 1138, 1786, 1840
BmuI ACTGGG 1 cut(s) 2215
BpiI GAAGAC 5 cut(s) 82, 188, 422, 602, 1705
BpmI CTGGAG 4 cut(s) 35, 687, 1464, 1800
Bpu1102I GCTNAGC 1 cut(s) 406
BpuEI CTTGAG 2 cut(s) 2381, 2792
BpuMI CCSGG 3 cut(s) 1325, 2370, 2560
Bsa29I ATCGAT 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 2526
BsaI GGTCTC 2 cut(s) 1398, 1502
BsaJI CCNNGG 8 cut(s) 208, 1441, 1451, 1490, 1531, 1671, 2344, 2559
BsaWI WCCGGW 4 cut(s) 34, 1016, 1228, 1300
BsaXI ACNNNNNCTCC 4 cut(s) 1527, 1557, 1773, 1803
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 1063, 2760
Bse118I RCCGGY 1 cut(s) 2699
Bse1I ACTGG 9 cut(s) 305, 556, 670, 1280, 1783, 1923, 2161, 2210, 2412
Bse8I GATNNNNATC 1 cut(s) 323
BseAI TCCGGA 1 cut(s) 1300
BseBI CCWGG 7 cut(s) 474, 1136, 1443, 1890, 2318, 2345, 2755
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 8 cut(s) 208, 1441, 1451, 1490, 1531, 1671, 2344, 2559
BseGI GGATG 8 cut(s) 58, 844, 969, 1000, 1681, 1779, 2474, 2480
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 3 cut(s) 234, 1063, 2760
BseMII CTCAG 9 cut(s) 92, 177, 442, 1497, 1875, 2669, 2768, 2792, 2813
BseNI ACTGG 9 cut(s) 305, 556, 670, 1280, 1783, 1923, 2161, 2210, 2412
BseRI GAGGAG 3 cut(s) 377, 1206, 1615
BseYI CCCAGC 1 cut(s) 1463
Bsh1236I CGCG 5 cut(s) 542, 1094, 1929, 2103, 2742
BshFI GGCC 4 cut(s) 1286, 1641, 2368, 2480
BshNI GGYRCC 1 cut(s) 947
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 1300
BsiHKCI CYCGRG 2 cut(s) 497, 2759
BslFI GGGAC 2 cut(s) 515, 2576
BslI CCNNNNNNNGG 3 cut(s) 234, 1063, 2760
BsmAI GTCTC 5 cut(s) 531, 1398, 1502, 1577, 1975
BsmBI CGTCTC 1 cut(s) 531
BsmFI GGGAC 2 cut(s) 515, 2576
BsmI GAATGC 1 cut(s) 1354
BsnI GGCC 4 cut(s) 1286, 1641, 2368, 2480
Bso31I GGTCTC 2 cut(s) 1398, 1502
BsoBI CYCGRG 2 cut(s) 497, 2759
Bsp1286I GDGCHC 1 cut(s) 1300
Bsp13I TCCGGA 1 cut(s) 1300
Bsp1407I TGTACA 1 cut(s) 2496
Bsp1720I GCTNAGC 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 1451
BspACI CCGC 7 cut(s) 282, 826, 1094, 1390, 1591, 1642, 2460
BspANI GGCC 4 cut(s) 1286, 1641, 2368, 2480
BspCNI CTCAG 9 cut(s) 93, 178, 441, 1498, 1876, 2668, 2769, 2793, 2814
BspDI ATCGAT 1 cut(s) 60
BspEI TCCGGA 1 cut(s) 1300
BspFNI CGCG 5 cut(s) 542, 1094, 1929, 2103, 2742
BspHI TCATGA 1 cut(s) 2082
BspLI GGNNCC 5 cut(s) 33, 224, 294, 949, 2077
BspMAI CTGCAG 2 cut(s) 253, 1007
BspMI ACCTGC 2 cut(s) 727, 1810
BspPI GGATC 7 cut(s) 26, 39, 408, 851, 1169, 1478, 2106
BspQI GCTCTTC 1 cut(s) 1671
BspT107I GGYRCC 1 cut(s) 947
BspTNI GGTCTC 2 cut(s) 1398, 1502
BsrBI CCGCTC 1 cut(s) 828
BsrFI RCCGGY 1 cut(s) 2699
BsrGI TGTACA 1 cut(s) 2496
BsrI ACTGG 9 cut(s) 305, 556, 670, 1280, 1783, 1923, 2161, 2210, 2412
BssAI RCCGGY 1 cut(s) 2699
BssECI CCNNGG 8 cut(s) 208, 1441, 1451, 1490, 1531, 1671, 2344, 2559
BssNI GRCGYC 1 cut(s) 2526
BssSI CACGAG 1 cut(s) 1188
BssT1I CCWWGG 4 cut(s) 208, 1451, 1490, 1531
Bst2BI CACGAG 1 cut(s) 1188
Bst2UI CCWGG 7 cut(s) 474, 1136, 1443, 1890, 2318, 2345, 2755
Bst4CI ACNGT 6 cut(s) 898, 1045, 1502, 2194, 2501, 2848
Bst6I CTCTTC 4 cut(s) 171, 972, 1633, 1671
BstACI GRCGYC 1 cut(s) 2526
BstAPI GCANNNNNTGC 3 cut(s) 380, 1216, 1862
BstAUI TGTACA 1 cut(s) 2496
BstC8I GCNNGC 3 cut(s) 74, 1288, 2705
BstDSI CCRYGG 2 cut(s) 1451, 1671
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 8 cut(s) 58, 844, 969, 1000, 1681, 1779, 2474, 2480
BstFNI CGCG 5 cut(s) 542, 1094, 1929, 2103, 2742
BstH2I RGCGCY 2 cut(s) 442, 1526
BstHHI GCGC 6 cut(s) 441, 544, 1525, 1931, 2390, 2744
BstMAI GTCTC 5 cut(s) 531, 1398, 1502, 1577, 1975
BstNI CCWGG 7 cut(s) 474, 1136, 1443, 1890, 2318, 2345, 2755
BstNSI RCATGY 4 cut(s) 630, 1618, 1766, 2789
BstSFI CTRYAG 2 cut(s) 249, 1003
BstUI CGCG 5 cut(s) 542, 1094, 1929, 2103, 2742
BstV2I GAAGAC 5 cut(s) 82, 188, 422, 602, 1705
BstX2I RGATCY 4 cut(s) 10, 31, 1078, 1315
BstYI RGATCY 4 cut(s) 10, 31, 1078, 1315
Bsu15I ATCGAT 1 cut(s) 60
BsuI GTATCC 1 cut(s) 2640
BsuRI GGCC 4 cut(s) 1286, 1641, 2368, 2480
BsuTUI ATCGAT 1 cut(s) 60
BtgI CCRYGG 2 cut(s) 1451, 1671
BtsCI GGATG 8 cut(s) 58, 844, 969, 1000, 1681, 1779, 2474, 2480
BtsI GCAGTG 2 cut(s) 1012, 1839
BtsIMutI CAGTG 7 cut(s) 711, 1012, 1507, 1839, 1915, 2220, 2506
BveI ACCTGC 2 cut(s) 727, 1810
Cac8I GCNNGC 3 cut(s) 74, 1288, 2705
CaiI CAGNNNCTG 1 cut(s) 1853
CciI TCATGA 1 cut(s) 2082
CfoI GCGC 6 cut(s) 441, 544, 1525, 1931, 2390, 2744
Cfr10I RCCGGY 1 cut(s) 2699
Cfr13I GGNCC 8 cut(s) 293, 739, 1284, 1448, 2367, 2478, 2697, 2818
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 5 cut(s) 548, 1100, 1148, 2573, 2748
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 5 cut(s) 470, 1242, 1618, 2497, 2798
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviQI GTAC 5 cut(s) 470, 1242, 1618, 2497, 2798
DraI TTTAAA 1 cut(s) 1809
Eam1104I CTCTTC 4 cut(s) 171, 972, 1633, 1671
EarI CTCTTC 4 cut(s) 171, 972, 1633, 1671
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 1298
Eco130I CCWWGG 4 cut(s) 208, 1451, 1490, 1531
Eco24I GRGCYC 1 cut(s) 1300
Eco31I GGTCTC 2 cut(s) 1398, 1502
Eco47I GGWCC 5 cut(s) 293, 739, 1448, 2697, 2818
Eco47III AGCGCT 1 cut(s) 1524
Eco53kI GAGCTC 1 cut(s) 1298
Eco57I CTGAAG 4 cut(s) 27, 159, 735, 2159
Eco88I CYCGRG 2 cut(s) 497, 2759
EcoICRI GAGCTC 1 cut(s) 1298
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoO109I RGGNCCY 2 cut(s) 293, 739
EcoRI GAATTC 1 cut(s) 876
EcoRII CCWGG 7 cut(s) 472, 1134, 1441, 1888, 2316, 2343, 2753
EcoT14I CCWWGG 4 cut(s) 208, 1451, 1490, 1531
EcoT38I GRGCYC 1 cut(s) 1300
ErhI CCWWGG 4 cut(s) 208, 1451, 1490, 1531
Esp3I CGTCTC 1 cut(s) 531
FalI AAGNNNNNCTT 2 cut(s) 1849, 1881
FaqI GGGAC 2 cut(s) 515, 2576
FbaI TGATCA 1 cut(s) 1561
FokI GGATG 8 cut(s) 65, 851, 976, 1007, 1688, 1786, 2481, 2487
FriOI GRGCYC 1 cut(s) 1300
FspBI CTAG 6 cut(s) 1058, 1082, 1122, 1313, 1491, 2604
GlaI GCGC 6 cut(s) 440, 543, 1524, 1930, 2389, 2743
GsaI CCCAGC 1 cut(s) 1467
GsuI CTGGAG 4 cut(s) 35, 687, 1464, 1800
HaeII RGCGCY 2 cut(s) 442, 1526
HaeIII GGCC 4 cut(s) 1286, 1641, 2368, 2480
HgaI GACGC 5 cut(s) 548, 1100, 1148, 2573, 2748
HhaI GCGC 6 cut(s) 441, 544, 1525, 1931, 2390, 2744
Hin1I GRCGYC 1 cut(s) 2526
Hin6I GCGC 6 cut(s) 439, 542, 1523, 1929, 2388, 2742
HinP1I GCGC 6 cut(s) 439, 542, 1523, 1929, 2388, 2742
HincII GTYRAC 4 cut(s) 553, 673, 1792, 2218
HindII GTYRAC 4 cut(s) 553, 673, 1792, 2218
HindIII AAGCTT 2 cut(s) 170, 2662
HpaI GTTAAC 2 cut(s) 673, 1792
Hpy166II GTNNAC 7 cut(s) 553, 632, 673, 706, 1234, 1792, 2218
Hpy8I GTNNAC 7 cut(s) 553, 632, 673, 706, 1234, 1792, 2218
Hpy99I CGWCG 1 cut(s) 2742
HpyAV CCTTC 8 cut(s) 527, 863, 1231, 1262, 1341, 1684, 2134, 2251
HpyCH4III ACNGT 6 cut(s) 898, 1045, 1502, 2194, 2501, 2848
HpyCH4IV ACGT 1 cut(s) 2526
HpySE526I ACGT 1 cut(s) 2526
Hsp92I GRCGYC 1 cut(s) 2526
HspAI GCGC 6 cut(s) 439, 542, 1523, 1929, 2388, 2742
Kpn2I TCCGGA 1 cut(s) 1300
Ksp22I TGATCA 1 cut(s) 1561
KspAI GTTAAC 2 cut(s) 673, 1792
LguI GCTCTTC 1 cut(s) 1671
LmnI GCTCC 3 cut(s) 415, 1295, 1303
LweI GCATC 7 cut(s) 124, 395, 445, 508, 1138, 1786, 1840
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 6 cut(s) 1058, 1082, 1122, 1313, 1491, 2604
MaeII ACGT 1 cut(s) 2526
MaeIII GTNAC 8 cut(s) 576, 586, 907, 1007, 1271, 2188, 2332, 2673
MbiI CCGCTC 1 cut(s) 828
MfeI CAATTG 2 cut(s) 972, 1572
MflI RGATCY 4 cut(s) 10, 31, 1078, 1315
MhlI GDGCHC 1 cut(s) 1300
MlyI GAGTC 3 cut(s) 584, 701, 1545
MmeI TCCRAC 3 cut(s) 9, 703, 2111
MroI TCCGGA 1 cut(s) 1300
MroXI GAANNNNTTC 3 cut(s) 1308, 1665, 1864
MseI TTAA 9 cut(s) 165, 492, 672, 866, 1527, 1791, 1808, 1880, 2532
MslI CAYNNNNRTG 4 cut(s) 806, 1500, 1728, 2330
MspA1I CMGCKG 1 cut(s) 2460
MunI CAATTG 2 cut(s) 972, 1572
Mva1269I GAATGC 1 cut(s) 1354
MvaI CCWGG 7 cut(s) 474, 1136, 1443, 1890, 2318, 2345, 2755
MvnI CGCG 5 cut(s) 542, 1094, 1929, 2103, 2742
NciI CCSGG 3 cut(s) 1325, 2370, 2560
NcoI CCATGG 1 cut(s) 1451
NlaIV GGNNCC 5 cut(s) 33, 224, 294, 949, 2077
NmuCI GTSAC 4 cut(s) 576, 586, 1007, 2332
NspI RCATGY 4 cut(s) 630, 1618, 1766, 2789
PagI TCATGA 1 cut(s) 2082
PaqCI CACCTGC 1 cut(s) 1810
PciI ACATGT 3 cut(s) 626, 1614, 2785
PciSI GCTCTTC 1 cut(s) 1671
PctI GAATGC 1 cut(s) 1354
PdmI GAANNNNTTC 3 cut(s) 1308, 1665, 1864
PfeI GAWTC 8 cut(s) 790, 1033, 1262, 1309, 1841, 2484, 2572, 2792
PleI GAGTC 3 cut(s) 583, 701, 1544
PpsI GAGTC 3 cut(s) 583, 701, 1544
PpuMI RGGWCCY 2 cut(s) 293, 739
PscI ACATGT 3 cut(s) 626, 1614, 2785
Psp124BI GAGCTC 1 cut(s) 1300
Psp5II RGGWCCY 2 cut(s) 293, 739
Psp6I CCWGG 7 cut(s) 472, 1134, 1441, 1888, 2316, 2343, 2753
PspFI CCCAGC 1 cut(s) 1463
PspGI CCWGG 7 cut(s) 472, 1134, 1441, 1888, 2316, 2343, 2753
PspN4I GGNNCC 5 cut(s) 33, 224, 294, 949, 2077
PspPI GGNCC 8 cut(s) 293, 739, 1284, 1448, 2367, 2478, 2697, 2818
PspPPI RGGWCCY 2 cut(s) 293, 739
PstI CTGCAG 2 cut(s) 253, 1007
PstNI CAGNNNCTG 1 cut(s) 1853
PsuI RGATCY 4 cut(s) 10, 31, 1078, 1315
RsaI GTAC 5 cut(s) 471, 1243, 1619, 2498, 2799
RsaNI GTAC 5 cut(s) 470, 1242, 1618, 2497, 2798
RseI CAYNNNNRTG 4 cut(s) 806, 1500, 1728, 2330
SacI GAGCTC 1 cut(s) 1300
SapI GCTCTTC 1 cut(s) 1671
SaqAI TTAA 9 cut(s) 165, 492, 672, 866, 1527, 1791, 1808, 1880, 2532
Sau96I GGNCC 8 cut(s) 293, 739, 1284, 1448, 2367, 2478, 2697, 2818
SchI GAGTC 3 cut(s) 584, 701, 1545
SduI GDGCHC 1 cut(s) 1300
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 7 cut(s) 124, 395, 445, 508, 1138, 1786, 1840
SfcI CTRYAG 2 cut(s) 249, 1003
SinI GGWCC 5 cut(s) 293, 739, 1448, 2697, 2818
SmiMI CAYNNNNRTG 4 cut(s) 806, 1500, 1728, 2330
SmlI CTYRAG 2 cut(s) 2360, 2807
SmoI CTYRAG 2 cut(s) 2360, 2807
SpeI ACTAGT 1 cut(s) 2603
SsiI CCGC 7 cut(s) 282, 826, 1094, 1390, 1591, 1642, 2460
SspMI CTAG 6 cut(s) 1058, 1082, 1122, 1313, 1491, 2604
SstI GAGCTC 1 cut(s) 1300
StyI CCWWGG 4 cut(s) 208, 1451, 1490, 1531
TaaI ACNGT 6 cut(s) 898, 1045, 1502, 2194, 2501, 2848
TaiI ACGT 1 cut(s) 2529
TaqI TCGA 7 cut(s) 60, 93, 931, 1062, 2232, 2261, 2583
TatI WGTACW 2 cut(s) 2496, 2797
TauI GCSGC 3 cut(s) 1594, 1644, 2463
TfiI GAWTC 8 cut(s) 790, 1033, 1262, 1309, 1841, 2484, 2572, 2792
Tru1I TTAA 9 cut(s) 165, 492, 672, 866, 1527, 1791, 1808, 1880, 2532
Tru9I TTAA 9 cut(s) 165, 492, 672, 866, 1527, 1791, 1808, 1880, 2532
TscAI CASTG 7 cut(s) 718, 1012, 1507, 1839, 1915, 2227, 2506
TseFI GTSAC 4 cut(s) 576, 586, 1007, 2332
Tsp45I GTSAC 4 cut(s) 576, 586, 1007, 2332
TspDTI ATGAA 7 cut(s) 346, 621, 1674, 1746, 1961, 2032, 2271
TspGWI ACGGA 1 cut(s) 2088
TspRI CASTG 7 cut(s) 718, 1012, 1507, 1839, 1915, 2227, 2506
VpaK11BI GGWCC 5 cut(s) 293, 739, 1448, 2697, 2818
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 7 cut(s) 40, 194, 757, 876, 1370, 2534, 2812
XbaI TCTAGA 2 cut(s) 1081, 1312
XceI RCATGY 4 cut(s) 630, 1618, 1766, 2789
XmaJI CCTAGG 1 cut(s) 1490
XmnI GAANNNNTTC 3 cut(s) 1308, 1665, 1864
XspI CTAG 6 cut(s) 1058, 1082, 1122, 1313, 1491, 2604
ZraI GACGTC 1 cut(s) 2527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.