Rmu_sc0002583.1_g000001

ATPase 10, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002583.1
OG0014890
Physical Location & Seq
Reverse (-)
870 .. 10369
9500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002583.1_g000001.1.cds

Sequence Viewer

Length: 3249 bp
atgtggatcattaggatcacccgattttcacccaaccatcagtcaactaccgaatcgattagatgtgttggggaggaggaggaggaagaaggaaggagcttcgtccctcttcccgcgcttccgaaatacttggatactaatttcaatagagatggcatcgatttggaacgcttacccctggaagaagtttttgaacaactgagaacatcagcgagaggactttcatccgatgatgctgaagccagattgcacatttttggctacaacaaacttgaagagaagacagagaacaaaattttgaagtttcttagctttatgtggaaccccttgtcatgggttatggaagctgcagcagttatggcacttgtccttgctaatggaggaggtgagggtcctgactggcaagactttgttgggattattgtcctattaataatcaattcaacaattagtttcatagaggagaataatgcgggaaatgctgcatcagctcttatggaacgtttatctccaaagacaagggttctcagagatgggcagtggcaagagcaagatgcaggtattttagtgccaggagacataattagcataaagctcggggatataattccagctgatgctcgtctacttgaaggagaccctctgaaagttgatcagtcggctcttacaggagagtctctggctgtcaccaagaggacaggtgatgaagtattttctggttcaacatgtaagcatggagaaattgaagctgtagtgatagcaaccggagttcactcattttttggaaaagcagcacatttagtcgacaccactgaagttgtgggacatttccagcaggtccttactgccattgggaatttctgcatttgctctatagctgtgggaatggttcttgaaatcattgtcatgttccccatacagcaacgttcttacagggatggaatcaacaaccttcttgttctcttaattggaggaattccaattgctatgccaacagtgttatctgtgacacttgcaattggttctcatcgactatctcaacagggtgcaattacaaaaaggatgacagcaattgaagaaatggcgggaatggatgtcctttgtagtgacaaaactggaactcttaccctgaaccgcctcactgttgataaaaacctggttgaggtttttaacaataatatagacagagacacagttatcttatttgcagccagagcagcaagactggagaatcaagacgcaattgatgcagccattaccaatatgcttggtgatccaagggaggcacgtgcaaatattaccgaagtgcattttctgcccttcaatccagtggacaagcgtactgccattacatacatcgactctgatggtaattggtatagggccagcaaaggagctccagaacagattctagatctttgccctgagaaaaatgagattgctggaagagtacatagcaccattgacaaatttgctgaaagaggcttgcggtctcttggagttgcttatcaggaagttccagaaaaaactaaagaaagccctggtggtccttggaccttttgtgggttgttgcccttgtttgatcctccgaggcatgacagtgctgaaaccattcgtagagcacttaaccttggagtcgctgtgaagatgattacaggtgaccagttggcaattgcgaaggagacagggagacggcttggtatgggaacaaacatgtatccttcctcttcattattgggccgcaaaaaagaagaagaccacgaagccgtgccagtggacgagctgattgagaaggcagatggctttgctggtgtcttccctgaacacaagtatgaaattgtaaaaatcttacaagaaaagaagcatgtcgttggaatgactggagatggtgttaacgatgcacctgctttaaagaaagcagacattggtatagcagtggcagattccacagatgctgcgagaagtgcttctgatatagtcttaacggaacctggcttaagtgtcattgtcagtgctgtcctgaccagtcgagctatattccagagaatgaagaattatactatatatgctgtttccattaccattaggattgtgcttggtttcgtgcttcttgcattgatatgggagtatgatttcccacctttcatggttctgattatagcaatactgaatgatgggaccatcatgacaatttcccaagatcgggtaaagccctctccaaagcctgacagttggaagttgaatgagatatttgcaactggcattgtcattggtacatatctagctttggttactgtgttattttactggactgtcattgagaccaccttctttgaggacaccttcggcttaatgtctatatccgacaacagtgaggaagtttcatctgctgtatatctgcaagttagcatcataagtcaagctctcatatttgttacccgaagtcaaggatggtcatttcttgagagacctggagctctgttgatgattgcattcgttgtggctcaactggtggctactctgattgccgtctatgcggaaatcagctttgcttacattagcggcattggatggggatgggctggagtcatatggttgtatagtttgattttctacttccccttggacattatcaagttcgcaattcgctatgccttgagtggagatgcctggaatttattgtttgatagaaagacagcttttactgctaagaaagattatgggaaggaagacagggcagctaaatgggtactttctcagagaactttacaggggttgcatgacatggagttcaaggcaggtagaactagccccaaaaattctggttggattgccgaacaggccagacggcgcgctgaaatagccaggttgggagagctacacactatgagaggacatgtagaatctgtaatgaggctcaaaaatttggacccgaaccccgcgcatcagccccctgcacctgcgtccatccctgcatcgcaggcccactgccgcacatccccattccggcctcagcctcaacctcacctcacctcaccggtcagcctcctccccagcgcccagcgatctgcagcagcaccagcacgtcgaactgcagcagcagcccaggcctctgacctgcagctcctccgaccagcgaccagctctgcccagtccgcttgcttcgcctgttccagtccgcctgatccgcctgcccagcccgcctgcccatccgcctgcctagtcttgcagattaggaggaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0006996 GO:0007033 GO:0007035 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0008553 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010214 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019725 GO:0019748 GO:0019829 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045851 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099131 GO:0099132 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1082

Amino Acids

118.68

Weight (kDa)

5.71

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17260
fragaria_vesca FvH4_6g36241
malus_domestica MD09G1171300.v1.1 MD17G1155800.v1.1
prunus_persica Prupe.3G029800_v2.0.a1 Prupe.3G029800_v2.0.a1
pyrus_communis pycom09g08870 pycom17g14850
rosa_chinensis RchiOBHm_Chr2g0148211
rosa_laevigata RLG00000020327
rosa_multiflora Rmu_sc0002583.1_g000001
rosa_roxburghii Rroxscaffold_2G00098990
rosa_rugosa Rorug02G0404500
rosa_samantha Rh2BG476300 Rh2CG449900
rosa_wichuraiana Rw2G037760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1912, 2968
Acc36I ACCTGC 6 cut(s) 548, 826, 1912, 2789, 2968, 3126
AccI GTMKAC 2 cut(s) 625, 804
AccII CGCG 3 cut(s) 116, 2853, 2942
AclI AACGTT 2 cut(s) 502, 925
AclWI GGATC 5 cut(s) 14, 23, 1268, 1577, 3179
AcsI RAATTY 7 cut(s) 294, 856, 975, 1469, 2674, 2818, 2923
AcuI CTGAAG 2 cut(s) 258, 834
AcvI CACGTG 1 cut(s) 1289
AfaI GTAC 4 cut(s) 1342, 1452, 2275, 2751
AfiI CCNNNNNNNGG 6 cut(s) 333, 1162, 1563, 2202, 2203, 3006
AflII CTTAAG 1 cut(s) 1996
AflIII ACRYGT 3 cut(s) 725, 1713, 2896
AgeI ACCGGT 1 cut(s) 3037
AjiI CACGTC 1 cut(s) 3086
AjnI CCWGG 9 cut(s) 177, 571, 1155, 1540, 1990, 2470, 2669, 2864, 3105
Alw21I GWGCWC 3 cut(s) 1399, 1624, 2479
Alw26I GTCTC 9 cut(s) 570, 630, 681, 1182, 1497, 1676, 1684, 2315, 2461
AlwI GGATC 5 cut(s) 14, 23, 1268, 1577, 3179
AlwNI CAGNNNCTG 1 cut(s) 1955
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 6 cut(s) 1383, 1738, 2841, 2982, 3008, 3108
ApoI RAATTY 7 cut(s) 294, 856, 975, 1469, 2674, 2818, 2923
AseI ATTAAT 1 cut(s) 431
AsiGI ACCGGT 1 cut(s) 3037
Asp700I GAANNNNTTC 3 cut(s) 1407, 1611, 1966
AspLEI GCGC 5 cut(s) 118, 2853, 2855, 2944, 3059
AspS9I GGNCC 9 cut(s) 392, 838, 1383, 1547, 1554, 1738, 2178, 2929, 2983
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 6 cut(s) 392, 838, 1547, 1554, 2178, 2929
BanII GRGCYC 2 cut(s) 1399, 2479
BbrPI CACGTG 1 cut(s) 1289
BbsI GAAGAC 4 cut(s) 287, 1761, 1807, 2736
Bbv12I GWGCWC 3 cut(s) 1399, 1624, 2479
BbvCI CCTCAGC 1 cut(s) 3012
BceAI ACGGC 4 cut(s) 1709, 1751, 2513, 2864
BcgI CGANNNNNNTGC 4 cut(s) 577, 611, 1886, 1920
BciT130I CCWGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
BciVI GTATCC 2 cut(s) 127, 1728
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 9 cut(s) 570, 630, 681, 1182, 1497, 1676, 1684, 2315, 2461
BfaI CTAG 4 cut(s) 1412, 2282, 2808, 3221
BfmI CTRYAG 6 cut(s) 348, 750, 873, 3069, 3093, 3119
BfoI RGCGCY 1 cut(s) 3060
BfrI CTTAAG 1 cut(s) 1996
BfuAI ACCTGC 6 cut(s) 548, 826, 1912, 2789, 2968, 3126
BfuI GTATCC 2 cut(s) 127, 1728
BglI GCCNNNNNGGC 1 cut(s) 2840
BglII AGATCT 1 cut(s) 1414
Bme1390I CCNGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
Bme18I GGWCC 6 cut(s) 392, 838, 1547, 1554, 2178, 2929
BmeT110I CYCGRG 1 cut(s) 596
BmgBI CACGTC 1 cut(s) 3086
BmgT120I GGNCC 9 cut(s) 392, 838, 1383, 1547, 1554, 1738, 2178, 2929, 2983
BmiI GGNNCC 5 cut(s) 323, 393, 1989, 2179, 2931
BmrFI CCNGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
BmrI ACTGGG 1 cut(s) 3145
BmuI ACTGGG 1 cut(s) 3145
BpiI GAAGAC 4 cut(s) 287, 1761, 1807, 2736
BpmI CTGGAG 5 cut(s) 1247, 1383, 1902, 2493, 2604
Bpu10I CCTNAGC 1 cut(s) 3012
BpuEI CTTGAG 2 cut(s) 2483, 2677
Bsa29I ATCGAT 2 cut(s) 56, 159
BsaAI YACGTR 1 cut(s) 1289
BsaI GGTCTC 4 cut(s) 630, 1497, 2315, 2461
BsaJI CCNNGG 8 cut(s) 177, 1277, 1540, 1550, 1589, 1630, 2622, 3105
BsaWI WCCGGW 2 cut(s) 764, 3037
BsaXI ACNNNNNCTCC 4 cut(s) 1626, 1656, 1875, 1905
Bsc4I CCNNNNNNNGG 6 cut(s) 333, 1162, 1563, 2202, 2203, 3006
Bse118I RCCGGY 1 cut(s) 3037
BseBI CCWGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
BseCI ATCGAT 2 cut(s) 56, 159
BseDI CCNNGG 8 cut(s) 177, 1277, 1540, 1550, 1589, 1630, 2622, 3105
BseLI CCNNNNNNNGG 6 cut(s) 333, 1162, 1563, 2202, 2203, 3006
BseMII CTCAG 5 cut(s) 191, 541, 1416, 2771, 3026
BsePI GCGCGC 1 cut(s) 2851
BseRI GAGGAG 7 cut(s) 89, 92, 95, 396, 476, 3038, 3116
BseYI CCCAGC 3 cut(s) 3053, 3060, 3195
BsgI GTGCAG 1 cut(s) 2940
Bsh1236I CGCG 3 cut(s) 116, 2853, 2942
BshFI GGCC 6 cut(s) 1385, 1740, 2843, 2984, 3010, 3110
BshTI ACCGGT 1 cut(s) 3037
BshVI ATCGAT 2 cut(s) 56, 159
BsiHKAI GWGCWC 3 cut(s) 1399, 1624, 2479
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 3 cut(s) 765, 3007, 3038
BslFI GGGAC 3 cut(s) 89, 837, 2191
BslI CCNNNNNNNGG 6 cut(s) 333, 1162, 1563, 2202, 2203, 3006
BsmAI GTCTC 9 cut(s) 570, 630, 681, 1182, 1497, 1676, 1684, 2315, 2461
BsmBI CGTCTC 1 cut(s) 1684
BsmFI GGGAC 3 cut(s) 89, 837, 2191
BsmI GAATGC 1 cut(s) 2492
BsnI GGCC 6 cut(s) 1385, 1740, 2843, 2984, 3010, 3110
Bso31I GGTCTC 4 cut(s) 630, 1497, 2315, 2461
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 3 cut(s) 1399, 1624, 2479
Bsp143I GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
BspANI GGCC 6 cut(s) 1385, 1740, 2843, 2984, 3010, 3110
BspCNI CTCAG 5 cut(s) 192, 540, 1417, 2770, 3025
BspDI ATCGAT 2 cut(s) 56, 159
BspFNI CGCG 3 cut(s) 116, 2853, 2942
BspHI TCATGA 1 cut(s) 2184
BspLI GGNNCC 5 cut(s) 323, 393, 1989, 2179, 2931
BspMAI CTGCAG 4 cut(s) 352, 3073, 3097, 3123
BspMI ACCTGC 6 cut(s) 548, 826, 1912, 2789, 2968, 3126
BspPI GGATC 5 cut(s) 14, 23, 1268, 1577, 3179
BspTI CTTAAG 1 cut(s) 1996
BspTNI GGTCTC 4 cut(s) 630, 1497, 2315, 2461
BsrFI RCCGGY 1 cut(s) 3037
BssAI RCCGGY 1 cut(s) 3037
BssECI CCNNGG 8 cut(s) 177, 1277, 1540, 1550, 1589, 1630, 2622, 3105
BssHII GCGCGC 1 cut(s) 2851
BssMI GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
BssT1I CCWWGG 4 cut(s) 1277, 1550, 1630, 2622
Bst2UI CCWGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
Bst4CI ACNGT 8 cut(s) 997, 1144, 1195, 1601, 2231, 2296, 2314, 2372
Bst6I CTCTTC 4 cut(s) 114, 270, 1441, 1732
BstAFI CTTAAG 1 cut(s) 1996
BstAPI GCANNNNNTGC 2 cut(s) 1247, 1315
BstBAI YACGTR 1 cut(s) 1289
BstC8I GCNNGC 9 cut(s) 1387, 1487, 2853, 2982, 3160, 3192, 3201, 3205, 3217
BstDEI CTNAG 7 cut(s) 200, 308, 527, 1425, 2709, 2757, 3012
BstEII GGTNACC 1 cut(s) 1658
BstENI CCTNNNNNAGG 1 cut(s) 1160
BstFNI CGCG 3 cut(s) 116, 2853, 2942
BstH2I RGCGCY 1 cut(s) 3060
BstHHI GCGC 5 cut(s) 118, 2853, 2855, 2944, 3059
BstKTI GATC 9 cut(s) 9, 18, 655, 1276, 1417, 1585, 2203, 3068, 3187
BstMAI GTCTC 9 cut(s) 570, 630, 681, 1182, 1497, 1676, 1684, 2315, 2461
BstMBI GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
BstNI CCWGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
BstNSI RCATGY 4 cut(s) 729, 1717, 1868, 2900
BstPI GGTNACC 1 cut(s) 1658
BstSCI CCNGG 9 cut(s) 177, 571, 1155, 1540, 1990, 2470, 2669, 2864, 3105
BstSFI CTRYAG 6 cut(s) 348, 750, 873, 3069, 3093, 3119
BstUI CGCG 3 cut(s) 116, 2853, 2942
BstV2I GAAGAC 4 cut(s) 287, 1761, 1807, 2736
BstX2I RGATCY 1 cut(s) 1414
BstYI RGATCY 1 cut(s) 1414
Bsu15I ATCGAT 2 cut(s) 56, 159
BsuI GTATCC 2 cut(s) 127, 1728
BsuRI GGCC 6 cut(s) 1385, 1740, 2843, 2984, 3010, 3110
BsuTUI ATCGAT 2 cut(s) 56, 159
BtgZI GCGATG 1 cut(s) 2961
BtrI CACGTC 1 cut(s) 3086
BtsI GCAGTG 3 cut(s) 545, 1941, 2986
BveI ACCTGC 6 cut(s) 548, 826, 1912, 2789, 2968, 3126
Cac8I GCNNGC 9 cut(s) 1387, 1487, 2853, 2982, 3160, 3192, 3201, 3205, 3217
CaiI CAGNNNCTG 1 cut(s) 1955
CciI TCATGA 1 cut(s) 2184
CfoI GCGC 5 cut(s) 118, 2853, 2855, 2944, 3059
Cfr10I RCCGGY 1 cut(s) 3037
Cfr13I GGNCC 9 cut(s) 392, 838, 1383, 1547, 1554, 1738, 2178, 2929, 2983
ClaI ATCGAT 2 cut(s) 56, 159
CseI GACGC 2 cut(s) 1247, 2952
CsiI ACCWGGT 1 cut(s) 1155
Csp6I GTAC 4 cut(s) 1341, 1451, 2274, 2750
CspAI ACCGGT 1 cut(s) 3037
CspCI CAANNNNNGTGG 4 cut(s) 799, 834, 2314, 2349
CviQI GTAC 4 cut(s) 1341, 1451, 2274, 2750
DdeI CTNAG 7 cut(s) 200, 308, 527, 1425, 2709, 2757, 3012
DpnI GATC 9 cut(s) 8, 17, 654, 1275, 1416, 1584, 2202, 3067, 3186
DpnII GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
DraI TTTAAA 1 cut(s) 1911
Eam1104I CTCTTC 4 cut(s) 114, 270, 1441, 1732
EarI CTCTTC 4 cut(s) 114, 270, 1441, 1732
EciI GGCGGA 3 cut(s) 3168, 3177, 3202
Ecl136II GAGCTC 2 cut(s) 1397, 2477
Eco130I CCWWGG 4 cut(s) 1277, 1550, 1630, 2622
Eco147I AGGCCT 1 cut(s) 3110
Eco24I GRGCYC 2 cut(s) 1399, 2479
Eco31I GGTCTC 4 cut(s) 630, 1497, 2315, 2461
Eco47I GGWCC 6 cut(s) 392, 838, 1547, 1554, 2178, 2929
Eco53kI GAGCTC 2 cut(s) 1397, 2477
Eco57I CTGAAG 2 cut(s) 258, 834
Eco72I CACGTG 1 cut(s) 1289
Eco88I CYCGRG 1 cut(s) 596
Eco91I GGTNACC 1 cut(s) 1658
EcoICRI GAGCTC 2 cut(s) 1397, 2477
EcoNI CCTNNNNNAGG 1 cut(s) 1160
EcoO109I RGGNCCY 2 cut(s) 392, 838
EcoO65I GGTNACC 1 cut(s) 1658
EcoRI GAATTC 1 cut(s) 975
EcoRII CCWGG 9 cut(s) 177, 571, 1155, 1540, 1990, 2470, 2669, 2864, 3105
EcoT14I CCWWGG 4 cut(s) 1277, 1550, 1630, 2622
EcoT38I GRGCYC 2 cut(s) 1399, 2479
ErhI CCWWGG 4 cut(s) 1277, 1550, 1630, 2622
Esp3I CGTCTC 1 cut(s) 1684
FaqI GGGAC 3 cut(s) 89, 837, 2191
FauI CCCGC 5 cut(s) 121, 466, 1078, 2947, 3208
FauNDI CATATG 1 cut(s) 2591
FbaI TGATCA 1 cut(s) 652
FblI GTMKAC 2 cut(s) 625, 804
FriOI GRGCYC 2 cut(s) 1399, 2479
FspBI CTAG 4 cut(s) 1412, 2282, 2808, 3221
GlaI GCGC 5 cut(s) 117, 2852, 2854, 2943, 3058
GsaI CCCAGC 3 cut(s) 3057, 3064, 3199
GsuI CTGGAG 5 cut(s) 1247, 1383, 1902, 2493, 2604
HaeII RGCGCY 1 cut(s) 3060
HaeIII GGCC 6 cut(s) 1385, 1740, 2843, 2984, 3010, 3110
HapII CCGG 3 cut(s) 765, 3007, 3038
HgaI GACGC 2 cut(s) 1247, 2952
HhaI GCGC 5 cut(s) 118, 2853, 2855, 2944, 3059
Hin6I GCGC 5 cut(s) 116, 2851, 2853, 2942, 3057
HinP1I GCGC 5 cut(s) 116, 2851, 2853, 2942, 3057
HincII GTYRAC 3 cut(s) 45, 805, 1894
HindII GTYRAC 3 cut(s) 45, 805, 1894
HpaI GTTAAC 1 cut(s) 1894
HpaII CCGG 3 cut(s) 765, 3007, 3038
Hpy166II GTNNAC 7 cut(s) 45, 626, 772, 805, 1333, 1777, 1894
Hpy8I GTNNAC 7 cut(s) 45, 626, 772, 805, 1333, 1777, 1894
Hpy99I CGWCG 1 cut(s) 3090
HpyCH4III ACNGT 8 cut(s) 997, 1144, 1195, 1601, 2231, 2296, 2314, 2372
HpyCH4IV ACGT 4 cut(s) 502, 925, 1288, 3085
HpyF3I CTNAG 7 cut(s) 200, 308, 527, 1425, 2709, 2757, 3012
HpySE526I ACGT 4 cut(s) 502, 925, 1288, 3085
HspAI GCGC 5 cut(s) 116, 2851, 2853, 2942, 3057
Ksp22I TGATCA 1 cut(s) 652
KspAI GTTAAC 1 cut(s) 1894
Kzo9I GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
LmnI GCTCC 5 cut(s) 96, 1394, 1402, 2474, 3129
MabI ACCWGGT 1 cut(s) 1155
MaeI CTAG 4 cut(s) 1412, 2282, 2808, 3221
MaeII ACGT 4 cut(s) 502, 925, 1288, 3085
MaeIII GTNAC 6 cut(s) 685, 1006, 1106, 1658, 2290, 2434
MalI GATC 9 cut(s) 8, 17, 654, 1275, 1416, 1584, 2202, 3067, 3186
MboI GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
MfeI CAATTG 5 cut(s) 981, 1017, 1071, 1242, 1671
MflI RGATCY 1 cut(s) 1414
MhlI GDGCHC 3 cut(s) 1399, 1624, 2479
MlyI GAGTC 4 cut(s) 683, 1355, 1644, 2595
MmeI TCCRAC 5 cut(s) 1852, 2213, 2388, 2807, 3154
MroXI GAANNNNTTC 3 cut(s) 1407, 1611, 1966
MseI TTAA 9 cut(s) 431, 965, 1170, 1626, 1893, 1910, 1982, 1997, 2351
MslI CAYNNNNRTG 4 cut(s) 905, 1599, 1830, 2119
MspA1I CMGCKG 1 cut(s) 614
MspCI CTTAAG 1 cut(s) 1996
MspI CCGG 3 cut(s) 765, 3007, 3038
MspR9I CCNGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
MunI CAATTG 5 cut(s) 981, 1017, 1071, 1242, 1671
Mva1269I GAATGC 1 cut(s) 2492
MvaI CCWGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
MvnI CGCG 3 cut(s) 116, 2853, 2942
NdeI CATATG 1 cut(s) 2591
NdeII GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
NlaIV GGNNCC 5 cut(s) 323, 393, 1989, 2179, 2931
NmuCI GTSAC 4 cut(s) 685, 1006, 1106, 1658
NspI RCATGY 4 cut(s) 729, 1717, 1868, 2900
PagI TCATGA 1 cut(s) 2184
PaqCI CACCTGC 2 cut(s) 1912, 2968
PauI GCGCGC 1 cut(s) 2851
PceI AGGCCT 1 cut(s) 3110
PciI ACATGT 3 cut(s) 725, 1713, 2896
PctI GAATGC 1 cut(s) 2492
PdmI GAANNNNTTC 3 cut(s) 1407, 1611, 1966
PfeI GAWTC 6 cut(s) 53, 942, 1231, 1408, 1943, 2903
PinAI ACCGGT 1 cut(s) 3037
PleI GAGTC 4 cut(s) 682, 1355, 1643, 2594
PmaCI CACGTG 1 cut(s) 1289
PmlI CACGTG 1 cut(s) 1289
PpsI GAGTC 4 cut(s) 682, 1355, 1643, 2594
Ppu21I YACGTR 1 cut(s) 1289
PpuMI RGGWCCY 2 cut(s) 392, 838
PscI ACATGT 3 cut(s) 725, 1713, 2896
PshBI ATTAAT 1 cut(s) 431
Psp124BI GAGCTC 2 cut(s) 1399, 2479
Psp1406I AACGTT 2 cut(s) 502, 925
Psp5II RGGWCCY 2 cut(s) 392, 838
Psp6I CCWGG 9 cut(s) 177, 571, 1155, 1540, 1990, 2470, 2669, 2864, 3105
PspCI CACGTG 1 cut(s) 1289
PspEI GGTNACC 1 cut(s) 1658
PspFI CCCAGC 3 cut(s) 3053, 3060, 3195
PspGI CCWGG 9 cut(s) 177, 571, 1155, 1540, 1990, 2470, 2669, 2864, 3105
PspN4I GGNNCC 5 cut(s) 323, 393, 1989, 2179, 2931
PspPI GGNCC 9 cut(s) 392, 838, 1383, 1547, 1554, 1738, 2178, 2929, 2983
PspPPI RGGWCCY 2 cut(s) 392, 838
PstI CTGCAG 4 cut(s) 352, 3073, 3097, 3123
PstNI CAGNNNCTG 1 cut(s) 1955
PsuI RGATCY 1 cut(s) 1414
PteI GCGCGC 1 cut(s) 2851
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 4 cut(s) 1342, 1452, 2275, 2751
RsaNI GTAC 4 cut(s) 1341, 1451, 2274, 2750
RseI CAYNNNNRTG 4 cut(s) 905, 1599, 1830, 2119
SacI GAGCTC 2 cut(s) 1399, 2479
SalI GTCGAC 1 cut(s) 803
SaqAI TTAA 9 cut(s) 431, 965, 1170, 1626, 1893, 1910, 1982, 1997, 2351
Sau3AI GATC 9 cut(s) 6, 15, 652, 1273, 1414, 1582, 2200, 3065, 3184
Sau96I GGNCC 9 cut(s) 392, 838, 1383, 1547, 1554, 1738, 2178, 2929, 2983
SchI GAGTC 4 cut(s) 683, 1355, 1644, 2595
ScrFI CCNGG 9 cut(s) 179, 573, 1157, 1542, 1992, 2472, 2671, 2866, 3107
SduI GDGCHC 3 cut(s) 1399, 1624, 2479
SexAI ACCWGGT 1 cut(s) 1155
SfcI CTRYAG 6 cut(s) 348, 750, 873, 3069, 3093, 3119
SinI GGWCC 6 cut(s) 392, 838, 1547, 1554, 2178, 2929
SmiMI CAYNNNNRTG 4 cut(s) 905, 1599, 1830, 2119
SmlI CTYRAG 3 cut(s) 1996, 2462, 2656
SmoI CTYRAG 3 cut(s) 1996, 2462, 2656
SseBI AGGCCT 1 cut(s) 3110
SspI AATATT 1 cut(s) 1297
SspMI CTAG 4 cut(s) 1412, 2282, 2808, 3221
SstI GAGCTC 2 cut(s) 1399, 2479
StuI AGGCCT 1 cut(s) 3110
StyD4I CCNGG 9 cut(s) 177, 571, 1155, 1540, 1990, 2470, 2669, 2864, 3105
StyI CCWWGG 4 cut(s) 1277, 1550, 1630, 2622
TaaI ACNGT 8 cut(s) 997, 1144, 1195, 1601, 2231, 2296, 2314, 2372
TaiI ACGT 4 cut(s) 505, 928, 1291, 3088
TaqI TCGA 7 cut(s) 56, 159, 804, 1030, 1359, 2029, 3088
TatI WGTACW 1 cut(s) 1450
TauI GCSGC 3 cut(s) 1743, 2565, 2994
TfiI GAWTC 6 cut(s) 53, 942, 1231, 1408, 1943, 2903
Tru1I TTAA 9 cut(s) 431, 965, 1170, 1626, 1893, 1910, 1982, 1997, 2351
Tru9I TTAA 9 cut(s) 431, 965, 1170, 1626, 1893, 1910, 1982, 1997, 2351
TseFI GTSAC 4 cut(s) 685, 1006, 1106, 1658
Tsp45I GTSAC 4 cut(s) 685, 1006, 1106, 1658
TspDTI ATGAA 8 cut(s) 213, 445, 720, 1719, 1848, 2063, 2134, 2373
TspGWI ACGGA 1 cut(s) 2000
Vha464I CTTAAG 1 cut(s) 1996
VpaK11BI GGWCC 6 cut(s) 392, 838, 1547, 1554, 2178, 2929
VspI ATTAAT 1 cut(s) 431
XagI CCTNNNNNAGG 1 cut(s) 1160
XapI RAATTY 7 cut(s) 294, 856, 975, 1469, 2674, 2818, 2923
XbaI TCTAGA 1 cut(s) 1411
XceI RCATGY 4 cut(s) 729, 1717, 1868, 2900
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XmiI GTMKAC 2 cut(s) 625, 804
XmnI GAANNNNTTC 3 cut(s) 1407, 1611, 1966
XspI CTAG 4 cut(s) 1412, 2282, 2808, 3221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.