Rroxscaffold_2G00098990

ATPase 10, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014890
Physical Location & Seq
Forward (+)
20481539 .. 20489358
7820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098990.1

Sequence Viewer

Length: 2754 bp
ATGGCTGAAGAACTGGACAAACCGTTGTTGGATCCTGAGAATTTCAATAGAGATGGCATCGATTTGGAACGCTTACCCCTGGAAGAAGTTTTTGAACAACTGAAAACATCAGCAAGAGGACTTTCATCCGATGATGCTGAAGCCAGATTGCACATTTTTGGCTACAACAAACTTGAAGAGAAGACAGGTGAGGGTCCTGACTGGCAAGACTTTGTTGGGATTATTGTCCTCTTAATAATCAATTCAACAATTAGTTTCATAGAGGAGAATAATGCGGGAAATGCTGCATCAGCTCTTATGGAACGTTTATCTCCAAAGACAAGGGTTCTCAGAGATGGACAGTGGCAAGAGCAAGATGCAGGTATTTTAGTGCCAGGAGACATAATTAGCATAAAGCTCGGGGATATAATTCCAGCTGATGCTCGTCTACTTGAAGGAGACCCTCTGAAATCGGCTCTTACAGGAGAGTCTCTGGCTGTCACCAAGAGGACAGGTGATGAAGTATTTTCTGGTTCAACATGTAAGCATGGAGAAATTGAAGCTGTAGTGATAGCAACCGGAGTTCACTCATTTTTTGGAAAAGCAGCACATTTAGTCGACACCACTGAAGTTGTGGGACATTTCCAGCAGGTCCTTACTGCCATTGGGAATTTCTGCATTTGCTCTATAGCTGTGGGAATGGTTCTTGAAATCATTGTCATGTTCCCCATACAGCAACGTTCTTACAGGGATGGAATCAACAACCTTCTTGTTCTCTTAATTGGAGGAATTCCAATTGCTATGCCAACAGTGTTATCTGTGACACTTGCAATTGGTTCTCATCGACTATCTCAACAGGGTGCTATTACAAAAAGGATGACAGCAATTGAAGAAATGGCGGGAATGGATGTCCTTTGTAGTGACAAAACTGGAACTCTTACCCTGAACCGCCTCACTGTTGATAAAAACCTGGTTGAGGTTTTTAACAATAATATAGACAGAGACACAGTTATCTTATTTGCAGCCAGAGCAGCGAGACTGGAGAATCAAGACGCAATTGATGCAGCCATTACCAATATGCTTGGTGATCCAAAGGAGGCACGTGCAAATATTACCGAAGTGCATTTTCTGCCCTTCAATCCAGTGGACAAGCGTACTGCCATTACATACATCGACTCTGATGGTAATTGGTATAGGGCCAGCAAAGGAGCTCCAGAACAGATTCTAGATCTCTGCCCTGAGAAAAATGAGATTGCTGGAAGAGTACATAGCACCATTGACAAATTTGCTGAAAGAGGCTTGCGGTCTCTTGGAGTTGCTTATCAGGAAGTTCCAGAAAAAACTAAAGAAAGCCCTGGCGGTCCTTGGACATTTTGTGGGTTGTTGCCCTTGTTTGATCCTCCGAGGCATGACAGTGCTGAGACCATTCGTAGAGCGCTTAACCTTGGAGTCGCTGTGAAGATGATTACAGGTGACCAGTTGGCAATTGCGAAGGAGACAGGGAGACGGCTTGGTATGGGAACAAACATGTATCCTTCCTCTTCATTATTGGGCCGCAGAAAAGAAGAAGAACACGAAGCCGTGCCAGTGGACGAGCTGATTGAGAAGGCAGATGGCTTTGCTGGTGTCTTCCCTGAACACAAGTATGAAATTGTAAAAATCTTACAAGAAAAGAAGCATGTTGTTGGAATGACTGGAGATGGTGTTAATGATGCACCTGCTTTAAAGAAAGCAGACATTGGTATAGCAGTGGCAGATTCCACAGATGCTGCGAGAAGTGCTTCTGATATAGTCTTAACGGAACCTGGCTTAAGTGTCATTGTCAGTGCTGTCCTGACCAGTCGAGCTATATTCCAGAGAATGAAGAATTATACTATATATGCTGTTTCCATTACCATTAGGATTGTGCTTGGTTTCGTGCTTCTTGCATTGATATGGGAGTATGATTTCCCACCTTTCATGGTTCTGATTATAGCAATACTGAATGATGGGACCATCATGACAATTTCCCAAGATCGGGTAAAGCCCTCTCCAAAGCCTGACAGTTGGAAGTTGAATGAGATATTTGCAACTGGCATTGTCATTGGTACATATCTAGCTTTGGTTACTGTGTTATTTTACTGGACTGTCATTGAGACCACCTTCTTTGAGGACACCTTCGGCTTAATGTCTATATCTGACAACAGTGAGGAAGTTTCATCTGCTGTATATCTGCAAGTTAGCATCATAAGTCAAGCTCTCATATTTGTTACCCGAAGTCAAGGATGGTCATTTCTTGAGAGACCTGGAGCTCTCTTGATGATTGCATTTGTTGTGGCTCAACTGGTGGCTACTCTGATTGCCGTCTATGCGGAAATCAGCTTTGCTTACATTAGCGGCATTGGATGGGGATGGGCTGGAGTCATATGGTTGTATAGTTTGATTTTCTACTTCCCCTTGGACATTATCAAGTTCGCAATTCGCTATGCCTTGAGTGGAGATGCCTGGAATTTATTGTTTGATAGAAAGACAGCTTTTACTGCTAAGAAAGATTATGGGAAGGAAGACAGGGCAGCTAAGTGGGTACTTTCTCAGAGAACTTTACAGGGGTTGCATGACATGGAGTTCAAGGCAGGTAGAACTAGCCCCAAAAATTCTGGTTGGATTGCCGAGCAGGCCAGACGGCGCGCTGAAATAGCCAGGTTGGGAGAGCTACACACTATGAGAGGACATGTAGAATCTGTAATGAGGCTCAAAAATTTGGACCCGAACGTTATTTCCGCCCACACAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0006996 GO:0007033 GO:0007035 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0008553 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010214 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019725 GO:0019748 GO:0019829 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045851 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099131 GO:0099132 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

917

Amino Acids

100.95

Weight (kDa)

5.29

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 24 - 64 5.6e-08 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 103 - 199 5.3e-26 P-type ATPase actuator domain
Hydrolase PF00702 295 - 572 3.3e-13 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 345 - 463 3.2e-07 P-type ATPase, cytoplasmic domain N
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17260
fragaria_vesca FvH4_6g36241
malus_domestica MD09G1171300.v1.1 MD17G1155800.v1.1
prunus_persica Prupe.3G029800_v2.0.a1 Prupe.3G029800_v2.0.a1
pyrus_communis pycom09g08870 pycom17g14850
rosa_chinensis RchiOBHm_Chr2g0148211
rosa_laevigata RLG00000020327
rosa_multiflora Rmu_sc0002583.1_g000001
rosa_roxburghii Rroxscaffold_2G00098990
rosa_rugosa Rorug02G0404500
rosa_samantha Rh2BG476300 Rh2CG449900
rosa_wichuraiana Rw2G037760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1705
Acc36I ACCTGC 4 cut(s) 350, 619, 1705, 2582
AccI GTMKAC 2 cut(s) 427, 597
AccII CGCG 1 cut(s) 2646
AciI CCGC 9 cut(s) 275, 878, 928, 1282, 1338, 1534, 2330, 2355, 2739
AclI AACGTT 3 cut(s) 304, 718, 2730
AclWI GGATC 4 cut(s) 26, 39, 1061, 1370
AcsI RAATTY 7 cut(s) 40, 649, 768, 1262, 2467, 2611, 2716
AcuI CTGAAG 3 cut(s) 27, 159, 627
AcvI CACGTG 1 cut(s) 1082
AfaI GTAC 4 cut(s) 1135, 1245, 2068, 2544
AfeI AGCGCT 1 cut(s) 1416
AfiI CCNNNNNNNGG 3 cut(s) 955, 1995, 1996
AflII CTTAAG 1 cut(s) 1789
AflIII ACRYGT 3 cut(s) 518, 1506, 2689
AjnI CCWGG 8 cut(s) 78, 373, 948, 1333, 1783, 2263, 2462, 2657
AloI GAACNNNNNNTCC 2 cut(s) 2720, 2752
Alw21I GWGCWC 2 cut(s) 1192, 2272
AlwI GGATC 4 cut(s) 26, 39, 1061, 1370
AlwNI CAGNNNCTG 1 cut(s) 1748
Ama87I CYCGRG 1 cut(s) 398
Aor51HI AGCGCT 1 cut(s) 1416
AoxI GGCC 3 cut(s) 1176, 1531, 2634
ApeKI GCWGC 7 cut(s) 284, 584, 1001, 1010, 1043, 1748, 2531
ApoI RAATTY 7 cut(s) 40, 649, 768, 1262, 2467, 2611, 2716
Asp700I GAANNNNTTC 2 cut(s) 1200, 1759
AspLEI GCGC 3 cut(s) 1417, 2646, 2648
AspS9I GGNCC 7 cut(s) 194, 631, 1176, 1340, 1531, 1971, 2722
AsuHPI GGTGA 5 cut(s) 200, 472, 506, 1076, 1463
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 5 cut(s) 194, 631, 1340, 1971, 2722
BamHI GGATCC 1 cut(s) 31
BanII GRGCYC 2 cut(s) 1192, 2272
BbrPI CACGTG 1 cut(s) 1082
BbsI GAAGAC 3 cut(s) 188, 1600, 2529
Bbv12I GWGCWC 2 cut(s) 1192, 2272
BbvI GCAGC 7 cut(s) 271, 596, 1013, 1022, 1055, 1735, 2543
BceAI ACGGC 4 cut(s) 1502, 1544, 2306, 2657
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciT130I CCWGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
BciVI GTATCC 1 cut(s) 1521
BfaI CTAG 3 cut(s) 1205, 2075, 2601
BfmI CTRYAG 2 cut(s) 543, 666
BfoI RGCGCY 1 cut(s) 1418
BfrI CTTAAG 1 cut(s) 1789
BfuAI ACCTGC 4 cut(s) 350, 619, 1705, 2582
BfuI GTATCC 1 cut(s) 1521
BglI GCCNNNNNGGC 1 cut(s) 2633
BglII AGATCT 1 cut(s) 1207
BisI GCNGC 9 cut(s) 285, 585, 1002, 1011, 1044, 1534, 1749, 2356, 2532
BlsI GCNGC 9 cut(s) 286, 586, 1003, 1012, 1045, 1535, 1750, 2357, 2533
Bme1390I CCNGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
Bme18I GGWCC 5 cut(s) 194, 631, 1340, 1971, 2722
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 7 cut(s) 194, 631, 1176, 1340, 1531, 1971, 2722
BmiI GGNNCC 5 cut(s) 33, 195, 1782, 1972, 2724
BmrFI CCNGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
BpiI GAAGAC 3 cut(s) 188, 1600, 2529
BpmI CTGGAG 5 cut(s) 1040, 1176, 1695, 2286, 2397
BpuEI CTTGAG 2 cut(s) 2276, 2470
Bsa29I ATCGAT 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 1082
BsaI GGTCTC 5 cut(s) 432, 1290, 1394, 2108, 2254
BsaJI CCNNGG 6 cut(s) 78, 1333, 1343, 1382, 1423, 2415
BsaWI WCCGGW 1 cut(s) 557
BsaXI ACNNNNNCTCC 4 cut(s) 1419, 1449, 1668, 1698
Bsc4I CCNNNNNNNGG 3 cut(s) 955, 1995, 1996
BseBI CCWGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 6 cut(s) 78, 1333, 1343, 1382, 1423, 2415
BseGI GGATG 7 cut(s) 125, 736, 861, 892, 2249, 2369, 2375
BseLI CCNNNNNNNGG 3 cut(s) 955, 1995, 1996
BseMII CTCAG 5 cut(s) 27, 343, 1209, 1389, 2564
BsePI GCGCGC 1 cut(s) 2644
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 7 cut(s) 271, 596, 1013, 1022, 1055, 1735, 2543
Bsh1236I CGCG 1 cut(s) 2646
BshFI GGCC 3 cut(s) 1178, 1533, 2636
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 1192, 2272
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 2 cut(s) 630, 1984
BslI CCNNNNNNNGG 3 cut(s) 955, 1995, 1996
BsmBI CGTCTC 1 cut(s) 1477
BsmFI GGGAC 2 cut(s) 630, 1984
BsnI GGCC 3 cut(s) 1178, 1533, 2636
Bso31I GGTCTC 5 cut(s) 432, 1290, 1394, 2108, 2254
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 1192, 2272
Bsp143I GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
BspACI CCGC 9 cut(s) 275, 878, 928, 1282, 1338, 1534, 2330, 2355, 2739
BspANI GGCC 3 cut(s) 1178, 1533, 2636
BspCNI CTCAG 5 cut(s) 28, 342, 1210, 1390, 2563
BspDI ATCGAT 1 cut(s) 60
BspFNI CGCG 1 cut(s) 2646
BspHI TCATGA 1 cut(s) 1977
BspLI GGNNCC 5 cut(s) 33, 195, 1782, 1972, 2724
BspMI ACCTGC 4 cut(s) 350, 619, 1705, 2582
BspPI GGATC 4 cut(s) 26, 39, 1061, 1370
BspTI CTTAAG 1 cut(s) 1789
BspTNI GGTCTC 5 cut(s) 432, 1290, 1394, 2108, 2254
BssECI CCNNGG 6 cut(s) 78, 1333, 1343, 1382, 1423, 2415
BssHII GCGCGC 1 cut(s) 2644
BssMI GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
BssT1I CCWWGG 3 cut(s) 1343, 1423, 2415
Bst2UI CCWGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
Bst6I CTCTTC 3 cut(s) 171, 1234, 1525
BstAFI CTTAAG 1 cut(s) 1789
BstAPI GCANNNNNTGC 2 cut(s) 1040, 1108
BstBAI YACGTR 1 cut(s) 1082
BstC8I GCNNGC 4 cut(s) 1180, 1280, 2634, 2646
BstDEI CTNAG 7 cut(s) 36, 329, 1218, 1398, 2502, 2535, 2550
BstEII GGTNACC 1 cut(s) 1451
BstENI CCTNNNNNAGG 1 cut(s) 953
BstF5I GGATG 7 cut(s) 125, 736, 861, 892, 2249, 2369, 2375
BstFNI CGCG 1 cut(s) 2646
BstH2I RGCGCY 1 cut(s) 1418
BstHHI GCGC 3 cut(s) 1417, 2646, 2648
BstKTI GATC 5 cut(s) 34, 1069, 1210, 1378, 1996
BstMBI GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
BstNI CCWGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
BstNSI RCATGY 4 cut(s) 522, 1510, 1661, 2693
BstPI GGTNACC 1 cut(s) 1451
BstSCI CCNGG 8 cut(s) 78, 373, 948, 1333, 1783, 2263, 2462, 2657
BstSFI CTRYAG 2 cut(s) 543, 666
BstUI CGCG 1 cut(s) 2646
BstV1I GCAGC 7 cut(s) 271, 596, 1013, 1022, 1055, 1735, 2543
BstV2I GAAGAC 3 cut(s) 188, 1600, 2529
BstX2I RGATCY 2 cut(s) 31, 1207
BstYI RGATCY 2 cut(s) 31, 1207
Bsu15I ATCGAT 1 cut(s) 60
BsuI GTATCC 1 cut(s) 1521
BsuRI GGCC 3 cut(s) 1178, 1533, 2636
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 7 cut(s) 125, 736, 861, 892, 2249, 2369, 2375
BtsI GCAGTG 1 cut(s) 1734
BveI ACCTGC 4 cut(s) 350, 619, 1705, 2582
Cac8I GCNNGC 4 cut(s) 1180, 1280, 2634, 2646
CaiI CAGNNNCTG 1 cut(s) 1748
CciI TCATGA 1 cut(s) 1977
CfoI GCGC 3 cut(s) 1417, 2646, 2648
Cfr13I GGNCC 7 cut(s) 194, 631, 1176, 1340, 1531, 1971, 2722
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 1040
CsiI ACCWGGT 1 cut(s) 948
Csp6I GTAC 4 cut(s) 1134, 1244, 2067, 2543
CspCI CAANNNNNGTGG 4 cut(s) 592, 627, 2107, 2142
CviQI GTAC 4 cut(s) 1134, 1244, 2067, 2543
DdeI CTNAG 7 cut(s) 36, 329, 1218, 1398, 2502, 2535, 2550
DpnI GATC 5 cut(s) 33, 1068, 1209, 1377, 1995
DpnII GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
DraI TTTAAA 1 cut(s) 1704
Eam1104I CTCTTC 3 cut(s) 171, 1234, 1525
EarI CTCTTC 3 cut(s) 171, 1234, 1525
EciI GGCGGA 1 cut(s) 2728
Ecl136II GAGCTC 2 cut(s) 1190, 2270
Eco130I CCWWGG 3 cut(s) 1343, 1423, 2415
Eco24I GRGCYC 2 cut(s) 1192, 2272
Eco31I GGTCTC 5 cut(s) 432, 1290, 1394, 2108, 2254
Eco47I GGWCC 5 cut(s) 194, 631, 1340, 1971, 2722
Eco47III AGCGCT 1 cut(s) 1416
Eco53kI GAGCTC 2 cut(s) 1190, 2270
Eco57I CTGAAG 3 cut(s) 27, 159, 627
Eco72I CACGTG 1 cut(s) 1082
Eco88I CYCGRG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 1451
EcoICRI GAGCTC 2 cut(s) 1190, 2270
EcoNI CCTNNNNNAGG 1 cut(s) 953
EcoO109I RGGNCCY 2 cut(s) 194, 631
EcoO65I GGTNACC 1 cut(s) 1451
EcoRI GAATTC 1 cut(s) 768
EcoRII CCWGG 8 cut(s) 78, 373, 948, 1333, 1783, 2263, 2462, 2657
EcoT14I CCWWGG 3 cut(s) 1343, 1423, 2415
EcoT38I GRGCYC 2 cut(s) 1192, 2272
ErhI CCWWGG 3 cut(s) 1343, 1423, 2415
Esp3I CGTCTC 1 cut(s) 1477
FaqI GGGAC 2 cut(s) 630, 1984
FauI CCCGC 2 cut(s) 268, 871
FauNDI CATATG 1 cut(s) 2384
FblI GTMKAC 2 cut(s) 427, 597
Fnu4HI GCNGC 9 cut(s) 285, 585, 1002, 1011, 1044, 1534, 1749, 2356, 2532
FokI GGATG 7 cut(s) 112, 743, 868, 899, 2256, 2376, 2382
FriOI GRGCYC 2 cut(s) 1192, 2272
Fsp4HI GCNGC 9 cut(s) 285, 585, 1002, 1011, 1044, 1534, 1749, 2356, 2532
FspBI CTAG 3 cut(s) 1205, 2075, 2601
GlaI GCGC 3 cut(s) 1416, 2645, 2647
GluI GCNGC 9 cut(s) 285, 585, 1002, 1011, 1044, 1534, 1749, 2356, 2532
GsuI CTGGAG 5 cut(s) 1040, 1176, 1695, 2286, 2397
HaeII RGCGCY 1 cut(s) 1418
HaeIII GGCC 3 cut(s) 1178, 1533, 2636
HapII CCGG 1 cut(s) 558
HgaI GACGC 1 cut(s) 1040
HhaI GCGC 3 cut(s) 1417, 2646, 2648
Hin6I GCGC 3 cut(s) 1415, 2644, 2646
HinP1I GCGC 3 cut(s) 1415, 2644, 2646
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 9 cut(s) 467, 735, 1024, 1154, 1201, 1428, 1736, 2379, 2696
HpaII CCGG 1 cut(s) 558
HphI GGTGA 5 cut(s) 200, 472, 506, 1076, 1463
Hpy166II GTNNAC 5 cut(s) 428, 565, 598, 1126, 1570
Hpy8I GTNNAC 5 cut(s) 428, 565, 598, 1126, 1570
HpyAV CCTTC 9 cut(s) 428, 755, 1123, 1465, 1524, 1579, 2131, 2146, 2512
HpyCH4IV ACGT 4 cut(s) 304, 718, 1081, 2730
HpyF3I CTNAG 7 cut(s) 36, 329, 1218, 1398, 2502, 2535, 2550
HpySE526I ACGT 4 cut(s) 304, 718, 1081, 2730
HspAI GCGC 3 cut(s) 1415, 2644, 2646
Kzo9I GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
LmnI GCTCC 3 cut(s) 1187, 1195, 2267
Lsp1109I GCAGC 7 cut(s) 271, 596, 1013, 1022, 1055, 1735, 2543
MabI ACCWGGT 1 cut(s) 948
MaeI CTAG 3 cut(s) 1205, 2075, 2601
MaeII ACGT 4 cut(s) 304, 718, 1081, 2730
MaeIII GTNAC 6 cut(s) 478, 799, 899, 1451, 2083, 2227
MalI GATC 5 cut(s) 33, 1068, 1209, 1377, 1995
MboI GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
MfeI CAATTG 5 cut(s) 774, 810, 864, 1035, 1464
MflI RGATCY 2 cut(s) 31, 1207
MhlI GDGCHC 2 cut(s) 1192, 2272
MlyI GAGTC 4 cut(s) 476, 1148, 1437, 2388
MmeI TCCRAC 4 cut(s) 9, 1645, 2006, 2600
MroXI GAANNNNTTC 2 cut(s) 1200, 1759
MseI TTAA 9 cut(s) 233, 758, 963, 1419, 1686, 1703, 1775, 1790, 2144
MslI CAYNNNNRTG 4 cut(s) 698, 1392, 1623, 1912
MspA1I CMGCKG 1 cut(s) 416
MspCI CTTAAG 1 cut(s) 1789
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
MunI CAATTG 5 cut(s) 774, 810, 864, 1035, 1464
MvaI CCWGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
MvnI CGCG 1 cut(s) 2646
NdeI CATATG 1 cut(s) 2384
NdeII GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
NlaIV GGNNCC 5 cut(s) 33, 195, 1782, 1972, 2724
NmeAIII GCCGAG 1 cut(s) 2653
NmuCI GTSAC 4 cut(s) 478, 799, 899, 1451
NspI RCATGY 4 cut(s) 522, 1510, 1661, 2693
PagI TCATGA 1 cut(s) 1977
PaqCI CACCTGC 1 cut(s) 1705
PauI GCGCGC 1 cut(s) 2644
PciI ACATGT 3 cut(s) 518, 1506, 2689
PdmI GAANNNNTTC 2 cut(s) 1200, 1759
PfeI GAWTC 5 cut(s) 735, 1024, 1201, 1736, 2696
PkrI GCNGC 9 cut(s) 286, 586, 1003, 1012, 1045, 1535, 1750, 2357, 2533
PleI GAGTC 4 cut(s) 475, 1148, 1436, 2387
PmaCI CACGTG 1 cut(s) 1082
PmlI CACGTG 1 cut(s) 1082
PpsI GAGTC 4 cut(s) 475, 1148, 1436, 2387
Ppu21I YACGTR 1 cut(s) 1082
PpuMI RGGWCCY 2 cut(s) 194, 631
PscI ACATGT 3 cut(s) 518, 1506, 2689
Psp124BI GAGCTC 2 cut(s) 1192, 2272
Psp1406I AACGTT 3 cut(s) 304, 718, 2730
Psp5II RGGWCCY 2 cut(s) 194, 631
Psp6I CCWGG 8 cut(s) 78, 373, 948, 1333, 1783, 2263, 2462, 2657
PspCI CACGTG 1 cut(s) 1082
PspEI GGTNACC 1 cut(s) 1451
PspGI CCWGG 8 cut(s) 78, 373, 948, 1333, 1783, 2263, 2462, 2657
PspN4I GGNNCC 5 cut(s) 33, 195, 1782, 1972, 2724
PspPI GGNCC 7 cut(s) 194, 631, 1176, 1340, 1531, 1971, 2722
PspPPI RGGWCCY 2 cut(s) 194, 631
PstNI CAGNNNCTG 1 cut(s) 1748
PsuI RGATCY 2 cut(s) 31, 1207
PteI GCGCGC 1 cut(s) 2644
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 4 cut(s) 1135, 1245, 2068, 2544
RsaNI GTAC 4 cut(s) 1134, 1244, 2067, 2543
RseI CAYNNNNRTG 4 cut(s) 698, 1392, 1623, 1912
SacI GAGCTC 2 cut(s) 1192, 2272
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 9 cut(s) 233, 758, 963, 1419, 1686, 1703, 1775, 1790, 2144
SatI GCNGC 9 cut(s) 285, 585, 1002, 1011, 1044, 1534, 1749, 2356, 2532
Sau3AI GATC 5 cut(s) 31, 1066, 1207, 1375, 1993
Sau96I GGNCC 7 cut(s) 194, 631, 1176, 1340, 1531, 1971, 2722
SchI GAGTC 4 cut(s) 476, 1148, 1437, 2388
ScrFI CCNGG 8 cut(s) 80, 375, 950, 1335, 1785, 2265, 2464, 2659
SduI GDGCHC 2 cut(s) 1192, 2272
SexAI ACCWGGT 1 cut(s) 948
SfcI CTRYAG 2 cut(s) 543, 666
SinI GGWCC 5 cut(s) 194, 631, 1340, 1971, 2722
SmiMI CAYNNNNRTG 4 cut(s) 698, 1392, 1623, 1912
SmlI CTYRAG 3 cut(s) 1789, 2255, 2449
SmoI CTYRAG 3 cut(s) 1789, 2255, 2449
SsiI CCGC 9 cut(s) 275, 878, 928, 1282, 1338, 1534, 2330, 2355, 2739
SspI AATATT 1 cut(s) 1090
SspMI CTAG 3 cut(s) 1205, 2075, 2601
SstI GAGCTC 2 cut(s) 1192, 2272
StyD4I CCNGG 8 cut(s) 78, 373, 948, 1333, 1783, 2263, 2462, 2657
StyI CCWWGG 3 cut(s) 1343, 1423, 2415
TaiI ACGT 4 cut(s) 307, 721, 1084, 2733
TaqI TCGA 5 cut(s) 60, 597, 823, 1152, 1822
TatI WGTACW 1 cut(s) 1243
TauI GCSGC 2 cut(s) 1536, 2358
TfiI GAWTC 5 cut(s) 735, 1024, 1201, 1736, 2696
Tru1I TTAA 9 cut(s) 233, 758, 963, 1419, 1686, 1703, 1775, 1790, 2144
Tru9I TTAA 9 cut(s) 233, 758, 963, 1419, 1686, 1703, 1775, 1790, 2144
TseFI GTSAC 4 cut(s) 478, 799, 899, 1451
TseI GCWGC 7 cut(s) 284, 584, 1001, 1010, 1043, 1748, 2531
Tsp45I GTSAC 4 cut(s) 478, 799, 899, 1451
TspDTI ATGAA 8 cut(s) 114, 247, 513, 1512, 1641, 1856, 1927, 2166
TspGWI ACGGA 1 cut(s) 1793
Vha464I CTTAAG 1 cut(s) 1789
VpaK11BI GGWCC 5 cut(s) 194, 631, 1340, 1971, 2722
XagI CCTNNNNNAGG 1 cut(s) 953
XapI RAATTY 7 cut(s) 40, 649, 768, 1262, 2467, 2611, 2716
XbaI TCTAGA 1 cut(s) 1204
XceI RCATGY 4 cut(s) 522, 1510, 1661, 2693
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmiI GTMKAC 2 cut(s) 427, 597
XmnI GAANNNNTTC 2 cut(s) 1200, 1759
XspI CTAG 3 cut(s) 1205, 2075, 2601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.