Rorug02G0404500

ATPase 10, plasma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014890
Physical Location & Seq
Forward (+)
51663050 .. 51665527
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0404500.1

Sequence Viewer

Length: 750 bp
ATGGCAAGAATAGCATTTGGAAGGTTTAATGATTCTTTCAGTTTGGGGTCCTTTAAGGCCTACGTTGCTGAGTTCATCTCAACCTTGCTCTTCGTTTTTGCAGGAGTTGGTTCAGCCATAGCTTACAACAAGTTGACATCCAATGCTGCTCTTGATCCTGCTGGACTCGTAGCCATTGCCATCTGCCATGGCTTTGCTCTCTTTGTTGCAGTTTCAGTTGCTGCCAACATCTCTGGGGGCCATGTGAACCCAGCTGTCACATTCGGATTGGCTCTTGGTGGCCAAATCACTATCCTCACTGGCATCTTCTACTGGATTGCCCAGCTTCTTGGTGCCATTGTTGCATGCTTCATCCTCAAGTTCGTCACCGGAGGCTTGACAATTCCTATCCACACTGTGGCTGCTGGAGTTGGAGCCATTGAAGGAGTTGTGTTTGAGATCATCATTACTTTTGCTTTGGTTTACACCGTCTATGCAACAGCAGCTGACCCCAAGAAGGGAGACATAGGCACAATTGCTCCCATTGCCATTGGTTTCATTGTTGGGGCCAACATCTTGGCTGCAGGACCCTTCTCCGGCGGGTCAATGAACCCTGCCCGATCATTTGGACCCGCCGTTGTCAGCGGAGACTTCACCGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGTCTTGCTGGCCTTATCTATGGCAATGTATTCATTCACTCTGAGCACCAACCCTTAGCCAGTACTGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0006996 GO:0007033 GO:0007035 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0008553 GO:0009058 GO:0009506 GO:0009507 GO:0009536 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010214 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019725 GO:0019748 GO:0019829 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045851 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099131 GO:0099132 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

249

Amino Acids

25.57

Weight (kDa)

5.88

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 15 - 232 2.2e-80 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17260
fragaria_vesca FvH4_6g36241
malus_domestica MD09G1171300.v1.1 MD17G1155800.v1.1
prunus_persica Prupe.3G029800_v2.0.a1 Prupe.3G029800_v2.0.a1
pyrus_communis pycom09g08870 pycom17g14850
rosa_chinensis RchiOBHm_Chr2g0148211
rosa_laevigata RLG00000020327
rosa_multiflora Rmu_sc0002583.1_g000001
rosa_roxburghii Rroxscaffold_2G00098990
rosa_rugosa Rorug02G0404500
rosa_samantha Rh2BG476300 Rh2CG449900
rosa_wichuraiana Rw2G037760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 397
AciI CCGC 3 cut(s) 579, 612, 624
AclWI GGATC 2 cut(s) 149, 653
AcoI YGGCCR 1 cut(s) 280
AdeI CACNNNGTG 1 cut(s) 397
AfaI GTAC 1 cut(s) 739
AfiI CCNNNNNNNGG 6 cut(s) 397, 496, 497, 575, 642, 668
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 4 cut(s) 122, 254, 325, 485
AluI AGCT 4 cut(s) 122, 254, 325, 485
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 2 cut(s) 495, 621
AlwI GGATC 2 cut(s) 149, 653
AlwNI CAGNNNCTG 2 cut(s) 221, 485
AoxI GGCC 5 cut(s) 57, 238, 280, 546, 685
ApeKI GCWGC 5 cut(s) 146, 221, 401, 482, 560
AspS9I GGNCC 6 cut(s) 48, 238, 546, 566, 608, 659
AsuHPI GGTGA 2 cut(s) 358, 625
AvaII GGWCC 4 cut(s) 48, 566, 608, 659
BalI TGGCCA 1 cut(s) 282
BanI GGYRCC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 5 cut(s) 133, 208, 388, 494, 547
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 495, 621
BfmI CTRYAG 1 cut(s) 561
BisI GCNGC 5 cut(s) 147, 222, 402, 483, 561
BlsI GCNGC 5 cut(s) 148, 223, 403, 484, 562
BmcAI AGTACT 1 cut(s) 739
Bme18I GGWCC 4 cut(s) 48, 566, 608, 659
BmgT120I GGNCC 6 cut(s) 48, 238, 546, 566, 608, 659
BmiI GGNNCC 8 cut(s) 49, 239, 334, 415, 547, 568, 610, 661
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 661
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 426
Bpu10I CCTNAGC 1 cut(s) 730
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 6 cut(s) 397, 496, 497, 575, 642, 668
Bse1I ACTGG 5 cut(s) 304, 317, 647, 656, 735
Bse3DI GCAATG 3 cut(s) 174, 522, 706
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 137, 351
BseLI CCNNNNNNNGG 6 cut(s) 397, 496, 497, 575, 642, 668
BseMI GCAATG 3 cut(s) 174, 522, 706
BseMII CTCAG 2 cut(s) 60, 708
BseNI ACTGG 5 cut(s) 304, 317, 647, 656, 735
BseXI GCAGC 5 cut(s) 133, 208, 388, 494, 547
BseYI CCCAGC 2 cut(s) 250, 321
BshFI GGCC 5 cut(s) 59, 240, 282, 548, 687
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 723
BsiSI CCGG 2 cut(s) 369, 576
BslI CCNNNNNNNGG 6 cut(s) 397, 496, 497, 575, 642, 668
BsmAI GTCTC 2 cut(s) 495, 621
BsnI GGCC 5 cut(s) 59, 240, 282, 548, 687
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 4 cut(s) 154, 438, 599, 645
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 3 cut(s) 579, 612, 624
BspANI GGCC 5 cut(s) 59, 240, 282, 548, 687
BspCNI CTCAG 2 cut(s) 61, 709
BspLI GGNNCC 8 cut(s) 49, 239, 334, 415, 547, 568, 610, 661
BspMAI CTGCAG 1 cut(s) 565
BspPI GGATC 2 cut(s) 149, 653
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 3 cut(s) 174, 522, 706
BsrI ACTGG 5 cut(s) 304, 317, 647, 656, 735
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 4 cut(s) 154, 438, 599, 645
BssT1I CCWWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 397, 469
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 346, 685
BstDEI CTNAG 3 cut(s) 69, 717, 730
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 137, 351
BstKTI GATC 4 cut(s) 157, 441, 602, 648
BstMAI GTCTC 2 cut(s) 495, 621
BstMBI GATC 4 cut(s) 154, 438, 599, 645
BstMWI GCNNNNNNNGC 5 cut(s) 11, 65, 341, 482, 524
BstNSI RCATGY 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 5 cut(s) 133, 208, 388, 494, 547
BstX2I RGATCY 1 cut(s) 645
BstXI CCANNNNNNTGG 2 cut(s) 329, 556
BstYI RGATCY 1 cut(s) 645
BsuRI GGCC 5 cut(s) 59, 240, 282, 548, 687
BtgI CCRYGG 1 cut(s) 187
BtsCI GGATG 2 cut(s) 137, 351
BtsIMutI CAGTG 2 cut(s) 297, 393
Cac8I GCNNGC 2 cut(s) 346, 685
CaiI CAGNNNCTG 2 cut(s) 221, 485
Cfr13I GGNCC 6 cut(s) 48, 238, 546, 566, 608, 659
Csp6I GTAC 1 cut(s) 738
CviAII CATG 3 cut(s) 188, 242, 345
CviQI GTAC 1 cut(s) 738
DdeI CTNAG 3 cut(s) 69, 717, 730
DpnI GATC 4 cut(s) 156, 440, 601, 647
DpnII GATC 4 cut(s) 154, 438, 599, 645
DraIII CACNNNGTG 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 59
Eco47I GGWCC 4 cut(s) 48, 566, 608, 659
EcoO109I RGGNCCY 2 cut(s) 48, 566
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 3 cut(s) 191, 245, 348
FaiI YATR 7 cut(s) 119, 189, 243, 346, 474, 506, 696
FatI CATG 3 cut(s) 187, 241, 344
FauI CCCGC 2 cut(s) 572, 619
Fnu4HI GCNGC 5 cut(s) 147, 222, 402, 483, 561
FokI GGATG 2 cut(s) 124, 338
Fsp4HI GCNGC 5 cut(s) 147, 222, 402, 483, 561
GluI GCNGC 5 cut(s) 147, 222, 402, 483, 561
GsaI CCCAGC 2 cut(s) 254, 325
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 5 cut(s) 59, 240, 282, 548, 687
HapII CCGG 2 cut(s) 369, 576
Hin1II CATG 3 cut(s) 191, 245, 348
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 2 cut(s) 32, 165
HpaII CCGG 2 cut(s) 369, 576
HphI GGTGA 2 cut(s) 358, 625
Hpy166II GTNNAC 3 cut(s) 135, 247, 463
Hpy188I TCNGA 2 cut(s) 266, 718
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 3 cut(s) 135, 247, 463
HpyAV CCTTC 4 cut(s) 15, 416, 490, 580
HpyCH4III ACNGT 2 cut(s) 397, 469
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 5 cut(s) 101, 209, 344, 476, 563
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 65, 341, 482, 524
HpyF3I CTNAG 3 cut(s) 69, 717, 730
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 191, 245, 348
Kzo9I GATC 4 cut(s) 154, 438, 599, 645
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 2 cut(s) 413, 523
Lsp1109I GCAGC 5 cut(s) 133, 208, 388, 494, 547
LweI GCATC 1 cut(s) 312
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 256, 364
MalI GATC 4 cut(s) 156, 440, 601, 647
MboI GATC 4 cut(s) 154, 438, 599, 645
MboII GAAGA 2 cut(s) 82, 298
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 723
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 2 cut(s) 381, 513
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 2 cut(s) 391, 637
MnlI CCTC 4 cut(s) 305, 365, 365, 674
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 2 cut(s) 27, 54
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 3 cut(s) 254, 485, 624
MspI CCGG 2 cut(s) 369, 576
MunI CAATTG 1 cut(s) 513
MwoI GCNNNNNNNGC 5 cut(s) 11, 65, 341, 482, 524
NcoI CCATGG 1 cut(s) 187
NdeII GATC 4 cut(s) 154, 438, 599, 645
NlaIII CATG 3 cut(s) 191, 245, 348
NlaIV GGNNCC 8 cut(s) 49, 239, 334, 415, 547, 568, 610, 661
NmuCI GTSAC 2 cut(s) 256, 364
NspI RCATGY 1 cut(s) 348
PaeI GCATGC 1 cut(s) 348
PceI AGGCCT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 5 cut(s) 148, 223, 403, 484, 562
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PpuMI RGGWCCY 2 cut(s) 48, 566
Psp5II RGGWCCY 2 cut(s) 48, 566
PspFI CCCAGC 2 cut(s) 250, 321
PspN4I GGNNCC 8 cut(s) 49, 239, 334, 415, 547, 568, 610, 661
PspPI GGNCC 6 cut(s) 48, 238, 546, 566, 608, 659
PspPPI RGGWCCY 2 cut(s) 48, 566
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 2 cut(s) 221, 485
PsuI RGATCY 1 cut(s) 645
PvuII CAGCTG 2 cut(s) 254, 485
RsaI GTAC 1 cut(s) 739
RsaNI GTAC 1 cut(s) 738
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 27, 54
SatI GCNGC 5 cut(s) 147, 222, 402, 483, 561
Sau3AI GATC 4 cut(s) 154, 438, 599, 645
Sau96I GGNCC 6 cut(s) 48, 238, 546, 566, 608, 659
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 723
SetI ASST 7 cut(s) 26, 66, 86, 124, 256, 327, 487
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 4 cut(s) 48, 566, 608, 659
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SphI GCATGC 1 cut(s) 348
Sse9I AATT 2 cut(s) 381, 513
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 3 cut(s) 579, 612, 624
SspI AATATT 1 cut(s) 746
StuI AGGCCT 1 cut(s) 59
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 397, 469
TaiI ACGT 1 cut(s) 66
TasI AATT 2 cut(s) 381, 513
TatI WGTACW 1 cut(s) 737
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 2 cut(s) 27, 54
Tru9I TTAA 2 cut(s) 27, 54
TscAI CASTG 2 cut(s) 304, 400
TseFI GTSAC 2 cut(s) 256, 364
TseI GCWGC 5 cut(s) 146, 221, 401, 482, 560
Tsp45I GTSAC 2 cut(s) 256, 364
TspDTI ATGAA 5 cut(s) 64, 340, 526, 602, 697
TspRI CASTG 2 cut(s) 304, 400
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 4 cut(s) 48, 566, 608, 659
XceI RCATGY 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.