MD17G1203500.v1.1

Protein of unknown function (DUF642)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
24612332 .. 24616471
4140 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1203500.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGAATAACAAACTCTCAGTGCTGCTGGTTCTGCTATGTGCAGCTAATTTCCACGCCACCTTATCATTTGTCACAGATGGCTTATTACCCAACGGCAACTTCGAGTACGGTCCAAAGCAATCAGAACTCAAAGGCACAGTAGTGACGAACCCTCATGCAATTCCCAACTGGGAAATCTCAGGCTTCGTCGAGTACATAAAATCAGGTCAAAAACAAGGTGACATGGTGCTGGTAGTCCCCGAGGGCGGCTTTGCAGTGAAGCTCGGCAACGAGGCCTTGATCAAGCAGAAGTTGAAGCTCACGAAAGGCAGCTTCTACTCCACCACGTTCACCGCTTCTCGGACGTGCGGGCAGGAGGCGAAGCTGAACGTGTCCGTCAATCCCAACCTTGAAGAAAATGACTGGGGAATAATGCCAATCCAGACAATATACAGCTGCAATGGATGGGATTCGTATGCATGGGGTTTTAATGCAGATTTTGATGACGTTGAGCTTGTGATCCATAACCCTGGGGTGGTGGAAGATCCTGCTTGTGGCCCACTTATTGATTCTGTTGCTTTGAAGCTCTTGGAACCTCCTAAACGTACTAGAGCCAACTTGTTGAAAAATGGAAACTTTGAAGAAGGGCCCTATGTGTCCCCCAACACATCATGGGGAACCCTAATCCCACCCCACATTGAAGACGACCACAGCCCACTCCCAGGCTGGATTATCGAGTCTCTCAAGGCCGTTAAGTACATCGACTCCGAGCACTTCTTCGTCCCTGAAGGCCGGAGAGCCATCGAGCTCGTCACCGGCAAAGAAAGCGCACTGACCCAAGTCGTCTTCACCAAGCCCGGCAAGCTCTACGCCCTCACATTCTCCGTCGGCGACTCCAACAACAGCTGCGAAGGCTCCCTCGTCGTCGAGGCGTTTGCCGGCAAAGACACCCTCAAGGTGCCGTACCAGTCCAAAGGCAAAGGTGGGTTCAAGCGCGCGAGGCTCATTTTCACCGCTGTGGGGCCGCGCACGAGGATCATGTTCTACAGTACGTTTTACACCATGGTCGCCGACCACTCTGGGTCTCTGTGCGGCCCCATCATTGACGACGTGAAGTTGCTTAGCGTTCGTAAAGTACGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

375

Amino Acids

40.98

Weight (kDa)

6.41

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 27 - 188 1e-63 Protein of unknown function (DUF642)
DUF642 PF04862 199 - 366 4.2e-17 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 937
AccII CGCG 4 cut(s) 975, 977, 1006, 1119
AciI CCGC 6 cut(s) 246, 333, 348, 993, 1004, 1071
AclWI GGATC 3 cut(s) 493, 518, 1022
AcuI CTGAAG 1 cut(s) 786
AfaI GTAC 7 cut(s) 107, 194, 586, 737, 944, 1030, 1116
AfiI CCNNNNNNNGG 6 cut(s) 245, 339, 514, 533, 701, 999
AflIII ACRYGT 2 cut(s) 369, 1117
AgsI TTSAA 7 cut(s) 295, 392, 562, 604, 620, 680, 970
AjiI CACGTC 2 cut(s) 345, 1090
AjnI CCWGG 2 cut(s) 508, 700
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AleI CACNNNNGTG 2 cut(s) 140, 995
Alw21I GWGCWC 2 cut(s) 753, 789
Alw26I GTCTC 2 cut(s) 723, 1068
AlwI GGATC 3 cut(s) 493, 518, 1022
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 7 cut(s) 273, 535, 626, 726, 769, 1001, 1072
ApaI GGGCCC 1 cut(s) 630
ApeKI GCWGC 5 cut(s) 22, 41, 309, 435, 885
AspLEI GCGC 4 cut(s) 809, 975, 977, 1008
AspS9I GGNCC 6 cut(s) 110, 536, 626, 627, 1001, 1073
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 5 cut(s) 230, 322, 784, 820, 982
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 630
BanI GGYRCC 1 cut(s) 937
BanII GRGCYC 2 cut(s) 630, 789
BauI CACGAG 1 cut(s) 1009
BbsI GAAGAC 2 cut(s) 687, 817
Bbv12I GWGCWC 2 cut(s) 753, 789
BbvI GCAGC 5 cut(s) 9, 53, 321, 422, 872
BccI CCATC 4 cut(s) 71, 438, 788, 1085
BceAI ACGGC 3 cut(s) 109, 713, 925
BcgI CGANNNNNNTGC 2 cut(s) 896, 930
BciT130I CCWGG 2 cut(s) 510, 702
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 723, 1068
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 1024
BisI GCNGC 8 cut(s) 23, 42, 247, 310, 436, 886, 1004, 1072
BlpI GCTNAGC 1 cut(s) 1100
BlsI GCNGC 8 cut(s) 24, 43, 248, 311, 437, 887, 1005, 1073
Bme1390I CCNGG 3 cut(s) 510, 702, 837
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 239
BmgBI CACGTC 2 cut(s) 345, 1090
BmgT120I GGNCC 6 cut(s) 110, 536, 626, 627, 1001, 1073
BmiI GGNNCC 7 cut(s) 573, 628, 658, 895, 939, 1002, 1075
BmrFI CCNGG 3 cut(s) 510, 702, 837
BmrI ACTGGG 2 cut(s) 178, 412
BmuI ACTGGG 2 cut(s) 178, 412
BoxI GACNNNNGTC 1 cut(s) 818
BpiI GAAGAC 2 cut(s) 687, 817
Bpu1102I GCTNAGC 1 cut(s) 1100
BpuEI CTTGAG 2 cut(s) 707, 917
BpuMI CCSGG 1 cut(s) 837
BsaI GGTCTC 1 cut(s) 1068
BsaJI CCNNGG 5 cut(s) 240, 508, 509, 700, 1041
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 6 cut(s) 245, 339, 514, 533, 701, 999
Bse118I RCCGGY 2 cut(s) 794, 917
Bse1I ACTGG 3 cut(s) 173, 407, 946
Bse3DI GCAATG 1 cut(s) 445
BseBI CCWGG 2 cut(s) 510, 702
BseDI CCNNGG 5 cut(s) 240, 508, 509, 700, 1041
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 6 cut(s) 245, 339, 514, 533, 701, 999
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 2 cut(s) 30, 192
BseNI ACTGG 3 cut(s) 173, 407, 946
BsePI GCGCGC 1 cut(s) 973
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 5 cut(s) 9, 53, 321, 422, 872
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 4 cut(s) 975, 977, 1006, 1119
BshFI GGCC 7 cut(s) 275, 537, 628, 728, 771, 1003, 1074
BshNI GGYRCC 1 cut(s) 937
BsiHKAI GWGCWC 2 cut(s) 753, 789
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 4 cut(s) 772, 795, 837, 918
BslFI GGGAC 3 cut(s) 221, 622, 746
BslI CCNNNNNNNGG 6 cut(s) 245, 339, 514, 533, 701, 999
BsmAI GTCTC 2 cut(s) 723, 1068
BsmFI GGGAC 3 cut(s) 221, 622, 746
BsnI GGCC 7 cut(s) 275, 537, 628, 728, 771, 1003, 1074
Bso31I GGTCTC 1 cut(s) 1068
BsoBI CYCGRG 1 cut(s) 239
Bsp120I GGGCCC 1 cut(s) 626
Bsp1286I GDGCHC 3 cut(s) 630, 753, 789
Bsp143I GATC 4 cut(s) 279, 498, 523, 1014
Bsp1720I GCTNAGC 1 cut(s) 1100
Bsp19I CCATGG 1 cut(s) 1041
BspACI CCGC 6 cut(s) 246, 333, 348, 993, 1004, 1071
BspANI GGCC 7 cut(s) 275, 537, 628, 728, 771, 1003, 1074
BspCNI CTCAG 2 cut(s) 29, 191
BspFNI CGCG 4 cut(s) 975, 977, 1006, 1119
BspLI GGNNCC 7 cut(s) 573, 628, 658, 895, 939, 1002, 1075
BspPI GGATC 3 cut(s) 493, 518, 1022
BspT107I GGYRCC 1 cut(s) 937
BspTNI GGTCTC 1 cut(s) 1068
BsrDI GCAATG 1 cut(s) 445
BsrFI RCCGGY 2 cut(s) 794, 917
BsrI ACTGG 3 cut(s) 173, 407, 946
BssAI RCCGGY 2 cut(s) 794, 917
BssECI CCNNGG 5 cut(s) 240, 508, 509, 700, 1041
BssHII GCGCGC 1 cut(s) 973
BssMI GATC 4 cut(s) 279, 498, 523, 1014
BssSI CACGAG 1 cut(s) 1009
BssT1I CCWWGG 1 cut(s) 1041
Bst2BI CACGAG 1 cut(s) 1009
Bst2UI CCWGG 2 cut(s) 510, 702
Bst4CI ACNGT 3 cut(s) 110, 139, 1028
BstC8I GCNNGC 4 cut(s) 350, 842, 919, 975
BstDEI CTNAG 3 cut(s) 16, 178, 1100
BstDSI CCRYGG 1 cut(s) 1041
BstF5I GGATG 1 cut(s) 449
BstFNI CGCG 4 cut(s) 975, 977, 1006, 1119
BstHHI GCGC 4 cut(s) 809, 975, 977, 1008
BstKTI GATC 4 cut(s) 282, 501, 526, 1017
BstMAI GTCTC 2 cut(s) 723, 1068
BstMBI GATC 4 cut(s) 279, 498, 523, 1014
BstMWI GCNNNNNNNGC 5 cut(s) 31, 804, 841, 891, 979
BstNI CCWGG 2 cut(s) 510, 702
BstPAI GACNNNNGTC 1 cut(s) 818
BstSCI CCNGG 3 cut(s) 508, 700, 835
BstSFI CTRYAG 1 cut(s) 1024
BstSLI GKGCMC 1 cut(s) 630
BstUI CGCG 4 cut(s) 975, 977, 1006, 1119
BstV1I GCAGC 5 cut(s) 9, 53, 321, 422, 872
BstV2I GAAGAC 2 cut(s) 687, 817
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 1 cut(s) 509
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 7 cut(s) 275, 537, 628, 728, 771, 1003, 1074
BtgI CCRYGG 1 cut(s) 1041
BtrI CACGTC 2 cut(s) 345, 1090
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 24, 261, 809
Cac8I GCNNGC 4 cut(s) 350, 842, 919, 975
CfoI GCGC 4 cut(s) 809, 975, 977, 1008
Cfr10I RCCGGY 2 cut(s) 794, 917
Cfr13I GGNCC 6 cut(s) 110, 536, 626, 627, 1001, 1073
Csp6I GTAC 7 cut(s) 106, 193, 585, 736, 943, 1029, 1115
CviAII CATG 6 cut(s) 155, 223, 459, 651, 1018, 1042
CviQI GTAC 7 cut(s) 106, 193, 585, 736, 943, 1029, 1115
DdeI CTNAG 3 cut(s) 16, 178, 1100
DpnI GATC 4 cut(s) 281, 500, 525, 1016
DpnII GATC 4 cut(s) 279, 498, 523, 1014
Ecl136II GAGCTC 1 cut(s) 787
Eco130I CCWWGG 1 cut(s) 1041
Eco147I AGGCCT 1 cut(s) 275
Eco24I GRGCYC 2 cut(s) 630, 789
Eco31I GGTCTC 1 cut(s) 1068
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 787
Eco57I CTGAAG 1 cut(s) 786
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 787
EcoO109I RGGNCCY 2 cut(s) 626, 627
EcoRII CCWGG 2 cut(s) 508, 700
EcoT14I CCWWGG 1 cut(s) 1041
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 2 cut(s) 630, 789
ErhI CCWWGG 1 cut(s) 1041
FaeI CATG 6 cut(s) 158, 226, 462, 654, 1021, 1045
FaqI GGGAC 3 cut(s) 221, 622, 746
FatI CATG 6 cut(s) 154, 222, 458, 650, 1017, 1041
FauI CCCGC 1 cut(s) 341
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 8 cut(s) 23, 42, 247, 310, 436, 886, 1004, 1072
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 2 cut(s) 630, 789
Fsp4HI GCNGC 8 cut(s) 23, 42, 247, 310, 436, 886, 1004, 1072
FspBI CTAG 1 cut(s) 588
GlaI GCGC 4 cut(s) 808, 974, 976, 1007
GluI GCNGC 8 cut(s) 23, 42, 247, 310, 436, 886, 1004, 1072
HaeIII GGCC 7 cut(s) 275, 537, 628, 728, 771, 1003, 1074
HapII CCGG 4 cut(s) 772, 795, 837, 918
HhaI GCGC 4 cut(s) 809, 975, 977, 1008
Hin1II CATG 6 cut(s) 158, 226, 462, 654, 1021, 1045
Hin6I GCGC 4 cut(s) 807, 973, 975, 1006
HinP1I GCGC 4 cut(s) 807, 973, 975, 1006
HinfI GANTC 5 cut(s) 449, 548, 716, 743, 872
HpaII CCGG 4 cut(s) 772, 795, 837, 918
HphI GGTGA 5 cut(s) 230, 322, 784, 820, 982
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 124, 342, 748
Hpy188III TCNNGA 2 cut(s) 301, 421
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 5 cut(s) 191, 869, 905, 908, 1091
HpyAV CCTTC 3 cut(s) 617, 761, 884
HpyCH4III ACNGT 3 cut(s) 110, 139, 1028
HpyCH4IV ACGT 7 cut(s) 326, 344, 369, 486, 583, 1031, 1089
HpyCH4V TGCA 6 cut(s) 41, 158, 254, 438, 458, 473
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 804, 841, 891, 979
HpyF3I CTNAG 3 cut(s) 16, 178, 1100
HpySE526I ACGT 7 cut(s) 326, 344, 369, 486, 583, 1031, 1089
Hsp92II CATG 6 cut(s) 158, 226, 462, 654, 1021, 1045
HspAI GCGC 4 cut(s) 807, 973, 975, 1006
KroI GCCGGC 1 cut(s) 917
KroNI GCCGGC 1 cut(s) 919
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 4 cut(s) 279, 498, 523, 1014
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 5 cut(s) 9, 53, 321, 422, 872
MaeI CTAG 1 cut(s) 588
MaeII ACGT 7 cut(s) 326, 344, 369, 486, 583, 1031, 1089
MaeIII GTNAC 4 cut(s) 70, 142, 218, 790
MalI GATC 4 cut(s) 281, 500, 525, 1016
MboI GATC 4 cut(s) 279, 498, 523, 1014
MboII GAAGA 6 cut(s) 404, 533, 632, 692, 748, 817
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 630, 753, 789
MluCI AATT 2 cut(s) 46, 159
MluI ACGCGT 1 cut(s) 1117
MlyI GAGTC 3 cut(s) 725, 737, 866
MmeI TCCRAC 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 460
MroNI GCCGGC 1 cut(s) 917
MseI TTAA 2 cut(s) 468, 732
MslI CAYNNNNRTG 2 cut(s) 140, 995
MspA1I CMGCKG 3 cut(s) 435, 885, 995
MspI CCGG 4 cut(s) 772, 795, 837, 918
MspR9I CCNGG 3 cut(s) 510, 702, 837
MvaI CCWGG 2 cut(s) 510, 702
MvnI CGCG 4 cut(s) 975, 977, 1006, 1119
MwoI GCNNNNNNNGC 5 cut(s) 31, 804, 841, 891, 979
NaeI GCCGGC 1 cut(s) 919
NciI CCSGG 1 cut(s) 837
NcoI CCATGG 1 cut(s) 1041
NdeII GATC 4 cut(s) 279, 498, 523, 1014
NgoMIV GCCGGC 1 cut(s) 917
NlaIII CATG 6 cut(s) 158, 226, 462, 654, 1021, 1045
NlaIV GGNNCC 7 cut(s) 573, 628, 658, 895, 939, 1002, 1075
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 4 cut(s) 70, 142, 218, 790
NsiI ATGCAT 1 cut(s) 460
OliI CACNNNNGTG 2 cut(s) 140, 995
PasI CCCWGGG 1 cut(s) 509
PauI GCGCGC 1 cut(s) 973
PceI AGGCCT 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 449, 548
PkrI GCNGC 8 cut(s) 24, 43, 248, 311, 437, 887, 1005, 1073
PleI GAGTC 3 cut(s) 724, 737, 866
PpsI GAGTC 3 cut(s) 724, 737, 866
PshAI GACNNNNGTC 1 cut(s) 818
Psp124BI GAGCTC 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 508, 700
PspGI CCWGG 2 cut(s) 508, 700
PspN4I GGNNCC 7 cut(s) 573, 628, 658, 895, 939, 1002, 1075
PspOMI GGGCCC 1 cut(s) 626
PspPI GGNCC 6 cut(s) 110, 536, 626, 627, 1001, 1073
PsuI RGATCY 1 cut(s) 523
PteI GCGCGC 1 cut(s) 973
PvuII CAGCTG 2 cut(s) 435, 885
RsaI GTAC 7 cut(s) 107, 194, 586, 737, 944, 1030, 1116
RsaNI GTAC 7 cut(s) 106, 193, 585, 736, 943, 1029, 1115
RseI CAYNNNNRTG 2 cut(s) 140, 995
SacI GAGCTC 1 cut(s) 789
SaqAI TTAA 2 cut(s) 468, 732
SatI GCNGC 8 cut(s) 23, 42, 247, 310, 436, 886, 1004, 1072
Sau3AI GATC 4 cut(s) 279, 498, 523, 1014
Sau96I GGNCC 6 cut(s) 110, 536, 626, 627, 1001, 1073
SchI GAGTC 3 cut(s) 725, 737, 866
ScrFI CCNGG 3 cut(s) 510, 702, 837
SduI GDGCHC 3 cut(s) 630, 753, 789
SfcI CTRYAG 1 cut(s) 1024
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 140, 995
SmlI CTYRAG 2 cut(s) 722, 932
SmoI CTYRAG 2 cut(s) 722, 932
Sse9I AATT 2 cut(s) 46, 159
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 6 cut(s) 246, 333, 348, 993, 1004, 1071
SspMI CTAG 1 cut(s) 588
SstI GAGCTC 1 cut(s) 789
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 3 cut(s) 508, 700, 835
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 3 cut(s) 110, 139, 1028
TaiI ACGT 7 cut(s) 329, 347, 372, 489, 586, 1034, 1092
TaqI TCGA 6 cut(s) 102, 189, 714, 741, 783, 906
TasI AATT 2 cut(s) 46, 159
TatI WGTACW 2 cut(s) 192, 735
TauI GCSGC 3 cut(s) 249, 1006, 1074
TfiI GAWTC 2 cut(s) 449, 548
Tru1I TTAA 2 cut(s) 468, 732
Tru9I TTAA 2 cut(s) 468, 732
TscAI CASTG 3 cut(s) 24, 261, 816
TseFI GTSAC 4 cut(s) 70, 142, 218, 790
TseI GCWGC 5 cut(s) 22, 41, 309, 435, 885
Tsp45I GTSAC 4 cut(s) 70, 142, 218, 790
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 364, 853
TspRI CASTG 3 cut(s) 24, 261, 816
VpaK11BI GGWCC 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XspI CTAG 1 cut(s) 588
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.