pycom1094g00040

Protein of unknown function (DUF642)

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001094
Physical Location & Seq
Forward (+)
54452 .. 57726
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1094g00040.3

Sequence Viewer

Length: 1029 bp
ATGAATAACAAACTCACAGTGCTGCTGCTTCTGCTATGTGCAGCTAATTTTCACGTCACCTTATCATTTGTAAAAGATGGCTTATTACCCAACGGCAACTTCGAGTACGGTCCAAATCAATCAGAACTCAAGGGCACAGTAGTGACAAACCCTCATGCAATTCCCAACTGGGAAATCTCAGGCTTCGTCGAGTACATAAAATCAGGCCAAAAACAAGGCGACATGCTGCTGGTCGTCCCCGAGGGTGGTTTCGCAGTCAGGCTCGGCAACGAGGCCTTGATCAAGCAGAAGTTGAAGGTCAAGAAAGGCGGGTTCTACTCCGTCACGTTCAGCGCCGCTCGGACGTGTGCACAGGAGGAGACGCTGAACGTGTCCATCACTCCCAACCTTGAGAAAAGGCACTGGGGAATAATGCCAATCCAGACAATGTACAGCAGCATTGGATGGGATTCGTATGCATGGGGTTTTAATGCAGATTTTGATGAGATCGAGCTTGTGATCCATAACCCTGGTGTGGAGGAAGATGCTGCTTGTGGCCCACTTATTGATTCTGTTGCTTTGAAGCTCTTGGCTTCTCCTAAACGTACTAGAGCCAACTTGTTGAAAAATGGAAACTTTGAAGAAGGGCCCTATCTGTTTCCCAACACATCATGGGGAGTCCTAATCCCACCCCACATAGAAGACGACCACAGCCCACTGCCAGGCTGGATCATCGAGTCCCTCAAGGCCGTCAAGTGCATCGACTCCAGGCACTTCTCCGTCCCCGAAGGCCGGAGAGCCATCGAGCTGGTCGCTGGCAAAGAAAGCGCATTGGCCCAAGTCGTCTTCACCTTGCCCGGAAAACTGTACGCACTCACATTCACCATCGGCGACTCCAACAATGCCTGTGAAGGCTCCCTCGCCGTTGAGGCGTTTGCCGGCAAAGACACCCTCAAAGTACTGTACCAGTCCAAAGGCCAAGGTGGGTTCAAGCGCGCCAGGTTCCTTTTCACCGCCGTGGGGCCGCGCACCAGGATCGATGTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

343

Amino Acids

37.45

Weight (kDa)

6.67

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 338
AccII CGCG 2 cut(s) 975, 1006
AciI CCGC 4 cut(s) 309, 336, 993, 1004
AclWI GGATC 3 cut(s) 493, 716, 1022
AfaI GTAC 7 cut(s) 107, 194, 431, 586, 848, 939, 944
AfiI CCNNNNNNNGG 5 cut(s) 245, 514, 701, 771, 999
AflIII ACRYGT 2 cut(s) 344, 369
AgsI TTSAA 5 cut(s) 295, 562, 604, 620, 970
AjiI CACGTC 2 cut(s) 55, 345
AjnI CCWGG 5 cut(s) 508, 700, 746, 977, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AleI CACNNNNGTG 2 cut(s) 140, 995
AluBI AGCT 4 cut(s) 44, 493, 565, 787
AluI AGCT 4 cut(s) 44, 493, 565, 787
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 348
AlwI GGATC 3 cut(s) 493, 716, 1022
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 9 cut(s) 205, 273, 535, 626, 726, 769, 813, 955, 1001
ApaI GGGCCC 1 cut(s) 630
ApaLI GTGCAC 1 cut(s) 348
ApeKI GCWGC 6 cut(s) 22, 25, 41, 226, 435, 527
AspLEI GCGC 5 cut(s) 335, 809, 975, 977, 1008
AspS9I GGNCC 6 cut(s) 110, 536, 626, 627, 814, 1001
AsuC2I CCSGG 1 cut(s) 837
AsuHPI GGTGA 4 cut(s) 49, 820, 853, 982
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 3 cut(s) 137, 352, 630
BanII GRGCYC 1 cut(s) 630
BbsI GAAGAC 2 cut(s) 687, 817
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 6 cut(s) 9, 12, 53, 213, 447, 514
BccI CCATC 5 cut(s) 71, 383, 438, 788, 872
BceAI ACGGC 4 cut(s) 109, 713, 887, 980
BcgI CGANNNNNNTGC 1 cut(s) 997
BciT130I CCWGG 5 cut(s) 510, 702, 748, 979, 1012
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 1 cut(s) 837
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 1025
BfoI RGCGCY 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 908
BisI GCNGC 8 cut(s) 23, 26, 42, 227, 336, 436, 528, 1004
BlsI GCNGC 8 cut(s) 24, 27, 43, 228, 337, 437, 529, 1005
BmcAI AGTACT 1 cut(s) 939
Bme1390I CCNGG 6 cut(s) 510, 702, 748, 837, 979, 1012
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 239
BmgBI CACGTC 2 cut(s) 55, 345
BmgT120I GGNCC 6 cut(s) 110, 536, 626, 627, 814, 1001
BmiI GGNNCC 4 cut(s) 628, 895, 983, 1002
BmrFI CCNGG 6 cut(s) 510, 702, 748, 837, 979, 1012
BmrI ACTGGG 2 cut(s) 178, 412
BmsI GCATC 2 cut(s) 514, 747
BmuI ACTGGG 2 cut(s) 178, 412
BpiI GAAGAC 2 cut(s) 687, 817
BpmI CTGGAG 1 cut(s) 730
BpuEI CTTGAG 3 cut(s) 113, 410, 707
BpuMI CCSGG 1 cut(s) 837
Bsa29I ATCGAT 1 cut(s) 1017
BsaJI CCNNGG 4 cut(s) 240, 508, 958, 996
Bsc4I CCNNNNNNNGG 5 cut(s) 245, 514, 701, 771, 999
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 3 cut(s) 173, 407, 946
BseBI CCWGG 5 cut(s) 510, 702, 748, 979, 1012
BseCI ATCGAT 1 cut(s) 1017
BseDI CCNNGG 4 cut(s) 240, 508, 958, 996
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 5 cut(s) 245, 514, 701, 771, 999
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 3 cut(s) 173, 407, 946
BsePI GCGCGC 1 cut(s) 973
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 3 cut(s) 137, 352, 630
BseXI GCAGC 6 cut(s) 9, 12, 53, 213, 447, 514
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 2 cut(s) 975, 1006
BshFI GGCC 9 cut(s) 207, 275, 537, 628, 728, 771, 815, 957, 1003
BshVI ATCGAT 1 cut(s) 1017
BsiHKAI GWGCWC 1 cut(s) 352
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 772, 837, 918
BslFI GGGAC 3 cut(s) 221, 703, 746
BslI CCNNNNNNNGG 5 cut(s) 245, 514, 701, 771, 999
BsmAI GTCTC 1 cut(s) 353
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 3 cut(s) 221, 703, 746
BsnI GGCC 9 cut(s) 207, 275, 537, 628, 728, 771, 815, 957, 1003
BsoBI CYCGRG 1 cut(s) 239
Bsp120I GGGCCC 1 cut(s) 626
Bsp1286I GDGCHC 3 cut(s) 137, 352, 630
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 5 cut(s) 279, 486, 498, 708, 1014
BspACI CCGC 4 cut(s) 309, 336, 993, 1004
BspANI GGCC 9 cut(s) 207, 275, 537, 628, 728, 771, 815, 957, 1003
BspCNI CTCAG 1 cut(s) 191
BspDI ATCGAT 1 cut(s) 1017
BspFNI CGCG 2 cut(s) 975, 1006
BspLI GGNNCC 4 cut(s) 628, 895, 983, 1002
BspPI GGATC 3 cut(s) 493, 716, 1022
BsrBI CCGCTC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 917
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 3 cut(s) 173, 407, 946
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 4 cut(s) 240, 508, 958, 996
BssHII GCGCGC 1 cut(s) 973
BssMI GATC 5 cut(s) 279, 486, 498, 708, 1014
BssT1I CCWWGG 1 cut(s) 958
Bst2UI CCWGG 5 cut(s) 510, 702, 748, 979, 1012
Bst4CI ACNGT 5 cut(s) 19, 110, 139, 846, 942
BstAUI TGTACA 1 cut(s) 429
BstC8I GCNNGC 3 cut(s) 796, 919, 975
BstDEI CTNAG 1 cut(s) 178
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 1 cut(s) 449
BstFNI CGCG 2 cut(s) 975, 1006
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 5 cut(s) 335, 809, 975, 977, 1008
BstKTI GATC 5 cut(s) 282, 489, 501, 711, 1017
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 5 cut(s) 279, 486, 498, 708, 1014
BstMWI GCNNNNNNNGC 3 cut(s) 31, 804, 908
BstNI CCWGG 5 cut(s) 510, 702, 748, 979, 1012
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 6 cut(s) 508, 700, 746, 835, 977, 1010
BstSFI CTRYAG 1 cut(s) 1025
BstSLI GKGCMC 3 cut(s) 137, 352, 630
BstUI CGCG 2 cut(s) 975, 1006
BstV1I GCAGC 6 cut(s) 9, 12, 53, 213, 447, 514
BstV2I GAAGAC 2 cut(s) 687, 817
BstXI CCANNNNNNTGG 2 cut(s) 509, 787
Bsu15I ATCGAT 1 cut(s) 1017
BsuRI GGCC 9 cut(s) 207, 275, 537, 628, 728, 771, 815, 957, 1003
BsuTUI ATCGAT 1 cut(s) 1017
BtgI CCRYGG 1 cut(s) 996
BtrI CACGTC 2 cut(s) 55, 345
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 3 cut(s) 24, 400, 695
Cac8I GCNNGC 3 cut(s) 796, 919, 975
CfoI GCGC 5 cut(s) 335, 809, 975, 977, 1008
Cfr10I RCCGGY 1 cut(s) 917
Cfr13I GGNCC 6 cut(s) 110, 536, 626, 627, 814, 1001
ClaI ATCGAT 1 cut(s) 1017
CseI GACGC 1 cut(s) 370
Csp6I GTAC 7 cut(s) 106, 193, 430, 585, 847, 938, 943
CviAII CATG 4 cut(s) 155, 223, 459, 651
CviQI GTAC 7 cut(s) 106, 193, 430, 585, 847, 938, 943
DdeI CTNAG 1 cut(s) 178
DpnI GATC 5 cut(s) 281, 488, 500, 710, 1016
DpnII GATC 5 cut(s) 279, 486, 498, 708, 1014
Eco130I CCWWGG 1 cut(s) 958
Eco147I AGGCCT 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 239
EcoO109I RGGNCCY 2 cut(s) 626, 627
EcoRII CCWGG 5 cut(s) 508, 700, 746, 977, 1010
EcoT14I CCWWGG 1 cut(s) 958
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 958
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 4 cut(s) 158, 226, 462, 654
FaqI GGGAC 3 cut(s) 221, 703, 746
FatI CATG 4 cut(s) 154, 222, 458, 650
FauI CCCGC 1 cut(s) 302
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 8 cut(s) 23, 26, 42, 227, 336, 436, 528, 1004
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 8 cut(s) 23, 26, 42, 227, 336, 436, 528, 1004
FspBI CTAG 1 cut(s) 588
GlaI GCGC 5 cut(s) 334, 808, 974, 976, 1007
GluI GCNGC 8 cut(s) 23, 26, 42, 227, 336, 436, 528, 1004
GsuI CTGGAG 1 cut(s) 730
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 9 cut(s) 207, 275, 537, 628, 728, 771, 815, 957, 1003
HapII CCGG 3 cut(s) 772, 837, 918
HgaI GACGC 1 cut(s) 370
HhaI GCGC 5 cut(s) 335, 809, 975, 977, 1008
Hin1II CATG 4 cut(s) 158, 226, 462, 654
Hin6I GCGC 5 cut(s) 333, 807, 973, 975, 1006
HinP1I GCGC 5 cut(s) 333, 807, 973, 975, 1006
HinfI GANTC 6 cut(s) 449, 548, 657, 716, 743, 872
HpaII CCGG 3 cut(s) 772, 837, 918
HphI GGTGA 4 cut(s) 49, 820, 853, 982
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 124, 342
Hpy188III TCNNGA 2 cut(s) 301, 421
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 289, 617, 761, 884
HpyCH4III ACNGT 5 cut(s) 19, 110, 139, 846, 942
HpyCH4IV ACGT 5 cut(s) 54, 326, 344, 369, 583
HpyCH4V TGCA 6 cut(s) 41, 158, 350, 458, 473, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 804, 908
HpyF3I CTNAG 1 cut(s) 178
HpySE526I ACGT 5 cut(s) 54, 326, 344, 369, 583
Hsp92II CATG 4 cut(s) 158, 226, 462, 654
HspAI GCGC 5 cut(s) 333, 807, 973, 975, 1006
KroI GCCGGC 1 cut(s) 917
KroNI GCCGGC 1 cut(s) 919
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 5 cut(s) 279, 486, 498, 708, 1014
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 6 cut(s) 9, 12, 53, 213, 447, 514
LweI GCATC 2 cut(s) 514, 747
MaeI CTAG 1 cut(s) 588
MaeII ACGT 5 cut(s) 54, 326, 344, 369, 583
MaeIII GTNAC 3 cut(s) 55, 142, 322
MalI GATC 5 cut(s) 281, 488, 500, 710, 1016
MbiI CCGCTC 1 cut(s) 338
MboI GATC 5 cut(s) 279, 486, 498, 708, 1014
MboII GAAGA 4 cut(s) 533, 632, 692, 817
MhlI GDGCHC 3 cut(s) 137, 352, 630
MluCI AATT 2 cut(s) 46, 159
MlyI GAGTC 4 cut(s) 666, 725, 737, 866
MmeI TCCRAC 1 cut(s) 900
MnlI CCTC 9 cut(s) 162, 235, 265, 349, 511, 731, 901, 908, 941
Mph1103I ATGCAT 1 cut(s) 460
MroNI GCCGGC 1 cut(s) 917
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 2 cut(s) 140, 995
MspI CCGG 3 cut(s) 772, 837, 918
MspR9I CCNGG 6 cut(s) 510, 702, 748, 837, 979, 1012
MvaI CCWGG 5 cut(s) 510, 702, 748, 979, 1012
MvnI CGCG 2 cut(s) 975, 1006
MwoI GCNNNNNNNGC 3 cut(s) 31, 804, 908
NaeI GCCGGC 1 cut(s) 919
NciI CCSGG 1 cut(s) 837
NdeII GATC 5 cut(s) 279, 486, 498, 708, 1014
NgoMIV GCCGGC 1 cut(s) 917
NlaIII CATG 4 cut(s) 158, 226, 462, 654
NlaIV GGNNCC 4 cut(s) 628, 895, 983, 1002
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 3 cut(s) 55, 142, 322
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 226
OliI CACNNNNGTG 2 cut(s) 140, 995
PauI GCGCGC 1 cut(s) 973
PceI AGGCCT 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 449, 548
PkrI GCNGC 8 cut(s) 24, 27, 43, 228, 337, 437, 529, 1005
PleI GAGTC 4 cut(s) 665, 724, 737, 866
PpsI GAGTC 4 cut(s) 665, 724, 737, 866
Psp6I CCWGG 5 cut(s) 508, 700, 746, 977, 1010
PspGI CCWGG 5 cut(s) 508, 700, 746, 977, 1010
PspN4I GGNNCC 4 cut(s) 628, 895, 983, 1002
PspOMI GGGCCC 1 cut(s) 626
PspPI GGNCC 6 cut(s) 110, 536, 626, 627, 814, 1001
PteI GCGCGC 1 cut(s) 973
RsaI GTAC 7 cut(s) 107, 194, 431, 586, 848, 939, 944
RsaNI GTAC 7 cut(s) 106, 193, 430, 585, 847, 938, 943
RseI CAYNNNNRTG 2 cut(s) 140, 995
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 8 cut(s) 23, 26, 42, 227, 336, 436, 528, 1004
Sau3AI GATC 5 cut(s) 279, 486, 498, 708, 1014
Sau96I GGNCC 6 cut(s) 110, 536, 626, 627, 814, 1001
ScaI AGTACT 1 cut(s) 939
SchI GAGTC 4 cut(s) 666, 725, 737, 866
ScrFI CCNGG 6 cut(s) 510, 702, 748, 837, 979, 1012
SduI GDGCHC 3 cut(s) 137, 352, 630
SfaNI GCATC 2 cut(s) 514, 747
SfcI CTRYAG 1 cut(s) 1025
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 2 cut(s) 140, 995
SmlI CTYRAG 3 cut(s) 128, 389, 722
SmoI CTYRAG 3 cut(s) 128, 389, 722
Sse9I AATT 2 cut(s) 46, 159
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 4 cut(s) 309, 336, 993, 1004
SspMI CTAG 1 cut(s) 588
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 6 cut(s) 508, 700, 746, 835, 977, 1010
StyI CCWWGG 1 cut(s) 958
TaaI ACNGT 5 cut(s) 19, 110, 139, 846, 942
TaiI ACGT 5 cut(s) 57, 329, 347, 372, 586
TaqI TCGA 7 cut(s) 102, 189, 489, 714, 741, 783, 1017
TasI AATT 2 cut(s) 46, 159
TatI WGTACW 3 cut(s) 192, 429, 937
TauI GCSGC 2 cut(s) 338, 1006
TfiI GAWTC 2 cut(s) 449, 548
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 3 cut(s) 24, 407, 702
TseFI GTSAC 3 cut(s) 55, 142, 322
TseI GCWGC 6 cut(s) 22, 25, 41, 226, 435, 527
Tsp45I GTSAC 3 cut(s) 55, 142, 322
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 310, 748
TspRI CASTG 3 cut(s) 24, 407, 702
VneI GTGCAC 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 110
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XspI CTAG 1 cut(s) 588
ZrmI AGTACT 1 cut(s) 939
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.