Rmu_sc0001368.1_g000004

Protein of unknown function (DUF642)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001368.1
Physical Location & Seq
Forward (+)
17742 .. 19080
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001368.1_g000004.1.cds

Sequence Viewer

Length: 999 bp
atgaaaggcacggtggtaacagcccacaatgccattcccaactgggaaacctcaggccatattgaatacataaaatccggccacaagcaaggcgacatgttgctggtggtccccgagggtggctccgccatcaggcttggaaacgacgcctcgatcaagcagaagatcaaggtgaccaatggcggcttctactccataacgttcagtgcggcccatacgtgtgcacaagaggagacagtgaacatttcagtcaatcccaacattgagaaacaagactttggcataattccagttcagaccacgtacagcaacactggttgggattcatattcttggggctttaaagcttttgctgatgagattgaggtaaccatccataacccgggggtggagaaggatccagcttgtggcccgctaatcgattcggttgctttgaaggtcatggagattcctcagcgtactagagccaacttgttgaagaatggcaacttcgaagaaggaccttatttgtttcccagcacatcatggggtgtcctcatcccaccgcacatcgaagacgaccacagtccactaccaggctggatcatcgaatccctcaaggccgttaaatacatcgactccaatcactacaccgtccccgaaggtcgaagggccatcgagctcgtcgccggaaaagagagcgaattgacccaggtggtcttcaccaagcccggcaggcgctacgctctcacattcttcgttggcgacagcaacaacggctgccaaggctccctcgttgtcgaggcatttgccggcaaggacacggtgaaggttccttacgagtccaaaggccaaggagggttcaagaaggccaggctcctcttcaccgccgtgtcgccgcgcacacgtatcatgtttctgagcacgttctataccatgtcgagcgatcactccggctctctgtgtggtccggtgatcgatgatatcaagttgctcatcattcgcggacgacgtgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

332

Amino Acids

36.41

Weight (kDa)

6.76

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 407
AccII CGCG 2 cut(s) 880, 984
AciI CCGC 8 cut(s) 126, 183, 209, 413, 545, 867, 878, 984
AclI AACGTT 1 cut(s) 200
AclWI GGATC 3 cut(s) 392, 405, 590
AcoI YGGCCR 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 2 cut(s) 305, 460
AfiI CCNNNNNNNGG 6 cut(s) 119, 132, 382, 388, 407, 575
AflIII ACRYGT 4 cut(s) 96, 218, 884, 991
AgsI TTSAA 4 cut(s) 65, 436, 478, 844
AjiI CACGTC 1 cut(s) 992
AjnI CCWGG 3 cut(s) 574, 690, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AleI CACNNNNGTG 1 cut(s) 869
AluBI AGCT 3 cut(s) 347, 404, 661
AluI AGCT 3 cut(s) 347, 404, 661
Alw21I GWGCWC 3 cut(s) 226, 663, 905
Alw26I GTCTC 1 cut(s) 227
Alw44I GTGCAC 1 cut(s) 222
AlwI GGATC 3 cut(s) 392, 405, 590
Ama87I CYCGRG 2 cut(s) 113, 382
AoxI GGCC 8 cut(s) 55, 79, 210, 409, 600, 651, 829, 849
ApaLI GTGCAC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 759
ArsI GACNNNNNNTTYG 1 cut(s) 978
AspLEI GCGC 2 cut(s) 720, 882
AspS9I GGNCC 6 cut(s) 109, 211, 410, 500, 651, 947
AsuC2I CCSGG 3 cut(s) 383, 384, 711
AsuHPI GGTGA 5 cut(s) 184, 694, 817, 856, 964
AsuII TTCGAA 1 cut(s) 492
AvaI CYCGRG 2 cut(s) 113, 382
AvaII GGWCC 3 cut(s) 109, 500, 947
AxyI CCTNAGG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 226
BamHI GGATCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 663
BarI GAAGNNNNNNTAC 2 cut(s) 800, 832
BbsI GAAGAC 2 cut(s) 561, 691
Bbv12I GWGCWC 3 cut(s) 226, 663, 905
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 746
BccI CCATC 3 cut(s) 137, 380, 662
BceAI ACGGC 3 cut(s) 587, 772, 854
BcgI CGANNNNNNTGC 4 cut(s) 410, 444, 770, 804
BciT130I CCWGG 3 cut(s) 576, 692, 853
BcnI CCSGG 3 cut(s) 383, 384, 711
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 721
BglI GCCNNNNNGGC 1 cut(s) 715
BisI GCNGC 4 cut(s) 184, 210, 760, 878
BlsI GCNGC 4 cut(s) 185, 211, 761, 879
Bme1390I CCNGG 6 cut(s) 383, 384, 576, 692, 711, 853
Bme18I GGWCC 3 cut(s) 109, 500, 947
BmeT110I CYCGRG 2 cut(s) 113, 382
BmgBI CACGTC 1 cut(s) 992
BmgT120I GGNCC 6 cut(s) 109, 211, 410, 500, 651, 947
BmiI GGNNCC 6 cut(s) 111, 124, 399, 769, 813, 857
BmrFI CCNGG 6 cut(s) 383, 384, 576, 692, 711, 853
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 564
BpiI GAAGAC 2 cut(s) 561, 691
BplI GAGNNNNNCTC 2 cut(s) 107, 139
Bpu10I CCTNAGC 1 cut(s) 453
Bpu14I TTCGAA 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 3 cut(s) 383, 384, 711
Bsa29I ATCGAT 2 cut(s) 420, 957
BsaAI YACGTR 3 cut(s) 219, 303, 887
BsaHI GRCGYC 1 cut(s) 147
BsaJI CCNNGG 6 cut(s) 114, 382, 383, 690, 763, 832
BsaWI WCCGGW 1 cut(s) 949
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 132, 382, 388, 407, 575
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 3 cut(s) 47, 290, 319
Bse21I CCTNAGG 1 cut(s) 52
BseBI CCWGG 3 cut(s) 576, 692, 853
BseCI ATCGAT 2 cut(s) 420, 957
BseDI CCNNGG 6 cut(s) 114, 382, 383, 690, 763, 832
BseGI GGATG 2 cut(s) 372, 537
BseLI CCNNNNNNNGG 6 cut(s) 119, 132, 382, 388, 407, 575
BseMII CTCAG 3 cut(s) 66, 467, 890
BseNI ACTGG 3 cut(s) 47, 290, 319
BseRI GAGGAG 2 cut(s) 245, 848
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 1 cut(s) 746
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 2 cut(s) 880, 984
BshFI GGCC 8 cut(s) 57, 81, 212, 411, 602, 653, 831, 851
BshVI ATCGAT 2 cut(s) 420, 957
BsiHKAI GWGCWC 3 cut(s) 226, 663, 905
BsiHKCI CYCGRG 2 cut(s) 113, 382
BsiSI CCGG 7 cut(s) 78, 383, 669, 711, 792, 933, 950
BslFI GGGAC 2 cut(s) 95, 620
BslI CCNNNNNNNGG 6 cut(s) 119, 132, 382, 388, 407, 575
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 2 cut(s) 95, 620
BsnI GGCC 8 cut(s) 57, 81, 212, 411, 602, 653, 831, 851
BsoBI CYCGRG 2 cut(s) 113, 382
Bsp119I TTCGAA 1 cut(s) 492
Bsp1286I GDGCHC 3 cut(s) 226, 663, 905
Bsp143I GATC 6 cut(s) 153, 165, 397, 582, 925, 954
BspACI CCGC 8 cut(s) 126, 183, 209, 413, 545, 867, 878, 984
BspANI GGCC 8 cut(s) 57, 81, 212, 411, 602, 653, 831, 851
BspCNI CTCAG 3 cut(s) 65, 466, 891
BspDI ATCGAT 2 cut(s) 420, 957
BspFNI CGCG 2 cut(s) 880, 984
BspLI GGNNCC 6 cut(s) 111, 124, 399, 769, 813, 857
BspPI GGATC 3 cut(s) 392, 405, 590
BspT104I TTCGAA 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 3 cut(s) 47, 290, 319
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 6 cut(s) 114, 382, 383, 690, 763, 832
BssMI GATC 6 cut(s) 153, 165, 397, 582, 925, 954
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 2 cut(s) 763, 832
Bst2UI CCWGG 3 cut(s) 576, 692, 853
Bst4CI ACNGT 5 cut(s) 13, 238, 566, 634, 805
Bst6I CTCTTC 1 cut(s) 866
BstACI GRCGYC 1 cut(s) 147
BstBAI YACGTR 3 cut(s) 219, 303, 887
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 3 cut(s) 413, 716, 793
BstDEI CTNAG 3 cut(s) 52, 453, 899
BstEII GGTNACC 2 cut(s) 172, 367
BstF5I GGATG 2 cut(s) 372, 537
BstFNI CGCG 2 cut(s) 880, 984
BstH2I RGCGCY 1 cut(s) 721
BstHHI GCGC 2 cut(s) 720, 882
BstKTI GATC 6 cut(s) 156, 168, 400, 585, 928, 957
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 6 cut(s) 153, 165, 397, 582, 925, 954
BstMWI GCNNNNNNNGC 4 cut(s) 29, 715, 756, 765
BstNI CCWGG 3 cut(s) 576, 692, 853
BstNSI RCATGY 1 cut(s) 100
BstPAI GACNNNNGTC 1 cut(s) 564
BstPI GGTNACC 2 cut(s) 172, 367
BstSCI CCNGG 6 cut(s) 381, 382, 574, 690, 709, 851
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 2 cut(s) 880, 984
BstV1I GCAGC 1 cut(s) 746
BstV2I GAAGAC 2 cut(s) 561, 691
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 2 cut(s) 420, 957
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 8 cut(s) 57, 81, 212, 411, 602, 653, 831, 851
BsuTUI ATCGAT 2 cut(s) 420, 957
BtrI CACGTC 1 cut(s) 992
BtsCI GGATG 2 cut(s) 372, 537
BtsIMutI CAGTG 3 cut(s) 211, 243, 312
Cac8I GCNNGC 3 cut(s) 413, 716, 793
CfoI GCGC 2 cut(s) 720, 882
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 6 cut(s) 109, 211, 410, 500, 651, 947
Cfr9I CCCGGG 1 cut(s) 382
ClaI ATCGAT 2 cut(s) 420, 957
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 304, 459
CviAII CATG 5 cut(s) 97, 442, 525, 892, 916
CviQI GTAC 2 cut(s) 304, 459
DdeI CTNAG 3 cut(s) 52, 453, 899
DpnI GATC 6 cut(s) 155, 167, 399, 584, 927, 956
DpnII GATC 6 cut(s) 153, 165, 397, 582, 925, 954
DraI TTTAAA 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 866
EarI CTCTTC 1 cut(s) 866
EciI GGCGGA 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 661
Eco130I CCWWGG 2 cut(s) 763, 832
Eco24I GRGCYC 1 cut(s) 663
Eco32I GATATC 1 cut(s) 964
Eco47I GGWCC 3 cut(s) 109, 500, 947
Eco53kI GAGCTC 1 cut(s) 661
Eco81I CCTNAGG 1 cut(s) 52
Eco88I CYCGRG 2 cut(s) 113, 382
Eco91I GGTNACC 2 cut(s) 172, 367
EcoICRI GAGCTC 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 500
EcoO65I GGTNACC 2 cut(s) 172, 367
EcoRII CCWGG 3 cut(s) 574, 690, 851
EcoRV GATATC 1 cut(s) 964
EcoT14I CCWWGG 2 cut(s) 763, 832
EcoT38I GRGCYC 1 cut(s) 663
ErhI CCWWGG 2 cut(s) 763, 832
FaeI CATG 5 cut(s) 100, 445, 528, 895, 919
FaqI GGGAC 2 cut(s) 95, 620
FatI CATG 5 cut(s) 96, 441, 524, 891, 915
FauI CCCGC 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 184, 210, 760, 878
FokI GGATG 2 cut(s) 359, 524
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 4 cut(s) 184, 210, 760, 878
FspBI CTAG 1 cut(s) 462
GlaI GCGC 2 cut(s) 719, 881
GluI GCNGC 4 cut(s) 184, 210, 760, 878
GsaI CCCAGC 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 721
HaeIII GGCC 8 cut(s) 57, 81, 212, 411, 602, 653, 831, 851
HapII CCGG 7 cut(s) 78, 383, 669, 711, 792, 933, 950
HgaI GACGC 1 cut(s) 155
HhaI GCGC 2 cut(s) 720, 882
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 5 cut(s) 100, 445, 528, 895, 919
Hin6I GCGC 2 cut(s) 718, 880
HinP1I GCGC 2 cut(s) 718, 880
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 6 cut(s) 323, 422, 448, 590, 617, 821
HpaII CCGG 7 cut(s) 78, 383, 669, 711, 792, 933, 950
HphI GGTGA 5 cut(s) 184, 694, 817, 856, 964
Hpy166II GTNNAC 3 cut(s) 224, 241, 569
Hpy188I TCNGA 2 cut(s) 297, 900
Hpy188III TCNNGA 1 cut(s) 844
Hpy8I GTNNAC 3 cut(s) 224, 241, 569
Hpy99I CGWCG 3 cut(s) 149, 668, 993
HpyAV CCTTC 7 cut(s) 388, 430, 491, 635, 642, 802, 841
HpyCH4III ACNGT 5 cut(s) 13, 238, 566, 634, 805
HpyCH4IV ACGT 6 cut(s) 200, 218, 302, 886, 905, 991
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 715, 756, 765
HpyF3I CTNAG 3 cut(s) 52, 453, 899
HpySE526I ACGT 6 cut(s) 200, 218, 302, 886, 905, 991
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 5 cut(s) 100, 445, 528, 895, 919
HspAI GCGC 2 cut(s) 718, 880
KroI GCCGGC 1 cut(s) 791
KroNI GCCGGC 1 cut(s) 793
Kzo9I GATC 6 cut(s) 153, 165, 397, 582, 925, 954
LmnI GCTCC 3 cut(s) 128, 773, 861
Lsp1109I GCAGC 1 cut(s) 746
MaeI CTAG 1 cut(s) 462
MaeII ACGT 6 cut(s) 200, 218, 302, 886, 905, 991
MaeIII GTNAC 3 cut(s) 16, 172, 367
MalI GATC 6 cut(s) 155, 167, 399, 584, 927, 956
MboI GATC 6 cut(s) 153, 165, 397, 582, 925, 954
MboII GAAGA 7 cut(s) 175, 490, 506, 566, 691, 727, 853
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 3 cut(s) 226, 663, 905
MluCI AATT 2 cut(s) 285, 683
MlyI GAGTC 2 cut(s) 611, 830
MroNI GCCGGC 1 cut(s) 791
MseI TTAA 2 cut(s) 342, 606
MslI CAYNNNNRTG 2 cut(s) 219, 869
MspI CCGG 7 cut(s) 78, 383, 669, 711, 792, 933, 950
MspR9I CCNGG 6 cut(s) 383, 384, 576, 692, 711, 853
MvaI CCWGG 3 cut(s) 576, 692, 853
MvnI CGCG 2 cut(s) 880, 984
MwoI GCNNNNNNNGC 4 cut(s) 29, 715, 756, 765
NaeI GCCGGC 1 cut(s) 793
NciI CCSGG 3 cut(s) 383, 384, 711
NdeII GATC 6 cut(s) 153, 165, 397, 582, 925, 954
NgoMIV GCCGGC 1 cut(s) 791
NlaIII CATG 5 cut(s) 100, 445, 528, 895, 919
NlaIV GGNNCC 6 cut(s) 111, 124, 399, 769, 813, 857
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 100
NspV TTCGAA 1 cut(s) 492
OliI CACNNNNGTG 1 cut(s) 869
PciI ACATGT 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 988
PdiI GCCGGC 1 cut(s) 793
PfeI GAWTC 4 cut(s) 323, 422, 448, 590
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 4 cut(s) 185, 211, 761, 879
PleI GAGTC 2 cut(s) 611, 829
PpsI GAGTC 2 cut(s) 611, 829
Ppu21I YACGTR 3 cut(s) 219, 303, 887
PpuMI RGGWCCY 1 cut(s) 500
PscI ACATGT 1 cut(s) 96
PshAI GACNNNNGTC 1 cut(s) 564
Psp124BI GAGCTC 1 cut(s) 663
Psp1406I AACGTT 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 500
Psp6I CCWGG 3 cut(s) 574, 690, 851
PspEI GGTNACC 2 cut(s) 172, 367
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 3 cut(s) 574, 690, 851
PspN4I GGNNCC 6 cut(s) 111, 124, 399, 769, 813, 857
PspPI GGNCC 6 cut(s) 109, 211, 410, 500, 651, 947
PspPPI RGGWCCY 1 cut(s) 500
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 2 cut(s) 305, 460
RsaNI GTAC 2 cut(s) 304, 459
RseI CAYNNNNRTG 2 cut(s) 219, 869
SacI GAGCTC 1 cut(s) 663
SaqAI TTAA 2 cut(s) 342, 606
SatI GCNGC 4 cut(s) 184, 210, 760, 878
Sau3AI GATC 6 cut(s) 153, 165, 397, 582, 925, 954
Sau96I GGNCC 6 cut(s) 109, 211, 410, 500, 651, 947
SchI GAGTC 2 cut(s) 611, 830
ScrFI CCNGG 6 cut(s) 383, 384, 576, 692, 711, 853
SduI GDGCHC 3 cut(s) 226, 663, 905
SfuI TTCGAA 1 cut(s) 492
SinI GGWCC 3 cut(s) 109, 500, 947
SmaI CCCGGG 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 219, 869
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 2 cut(s) 285, 683
SsiI CCGC 8 cut(s) 126, 183, 209, 413, 545, 867, 878, 984
SspMI CTAG 1 cut(s) 462
SstI GAGCTC 1 cut(s) 663
StyD4I CCNGG 6 cut(s) 381, 382, 574, 690, 709, 851
StyI CCWWGG 2 cut(s) 763, 832
TaaI ACNGT 5 cut(s) 13, 238, 566, 634, 805
TaiI ACGT 6 cut(s) 203, 221, 305, 889, 908, 994
TasI AATT 2 cut(s) 285, 683
TauI GCSGC 3 cut(s) 186, 212, 880
TfiI GAWTC 4 cut(s) 323, 422, 448, 590
Tru1I TTAA 2 cut(s) 342, 606
Tru9I TTAA 2 cut(s) 342, 606
TscAI CASTG 3 cut(s) 211, 243, 319
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 759
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 17, 315
TspMI CCCGGG 1 cut(s) 382
TspRI CASTG 3 cut(s) 211, 243, 319
Van91I CCANNNNNTGG 1 cut(s) 407
VneI GTGCAC 1 cut(s) 222
VpaK11BI GGWCC 3 cut(s) 109, 500, 947
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XmaI CCCGGG 1 cut(s) 382
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.