Rorug02G0334400

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005921
Physical Location & Seq
Reverse (-)
41536630 .. 41537733
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0334400.1

Sequence Viewer

Length: 1104 bp
ATGGCCACCATTGAAGACATGACGGCGAGCTTCGCTTCCTCTCTTGCGCTGGCAGGGGATGATGTGGTGGACATGGGCAAATTGGTCGCAGGACCGGTGCAGCGTACTTCTCAAGCGTTTCTTCTGGGACGCTTTCTGACCATAAAGACGGTGGCTCTCAAGGACGAGCGCCGCCACTTTCGGCGTGTGTGGATGCTGGAGAAGGGATTCCAGATTCAGGAAAAACCACTGGACCGTTTCCTTTTCTGTTTTGACGATCGTGGGGATTGCAGAAAGGTCTTGAAGGGAGGAGCCTGGAATCTTAACCGGGCTACTTTGATCCTGCAGGATTATGATGGCGCCACCTCAATCAACAAAGTGGATCTGTCGTCGATCATATATTGGGTACGTATTACCAATATTCCACCTTTGTTTGAGACTAAGGAGAATATTATGAAAATAGCATCTATGGCTGGGAAATATCTTGATATGGATGAGAAGCTTTTTAAGTATGAAAGGGAGATTAGGGTTAGGGTTTCGCATGATATCTCTAAGCCTTTTTTTCTGACAAAAACAATGAGGTTGGGTCCAGGCATCGAGGAGGAGATCCATTTTTTCTTTGAGAATTTGATTGGCAGGTGCCGAAATTGTGCTCTTATTTTTCATAAAGATGGGAGGTGTACTGCTACTGCACCGTTGCCAACTCAAGGAAGTAGGGCTGGTCCTGTGCTCCAGTTCGCTGAAGGTAGGTTCCAATTGGGCGGGACAACTTTTCAGTTTCAGTCCTCTATTCCATCTCATGTGGCACGGTCGCTGTTTACGGACGTGCAGTTTGTCAGGCCTAGGAAGGACAAGAGGTCTGTGGTCATCAGGGATGCCGGTTCTAGGGCTTCCGTAAGTACAGATGATACCTTGGCAGTGGTACCAGTGACTGATTCCATGCAAAAGAAGAGGGACAGACCAGTATCTCCGAATGTGTCCCCAAAGAAGATGAAGCATGGTCTGGAGGCAGTACTGGAAGGTAGGCAAGCTTGTTTTTTGCCTCCTAAGAAAGTGAAATTACCGGATTCCCCACCCGTATTTCTGCTACGTCTTTTGGTCTCATGGAAACTTCGGAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

367

Amino Acids

41.58

Weight (kDa)

9.83

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 38 - 112 2.6e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 606
Acc36I ACCTGC 1 cut(s) 606
Acc65I GGTACC 1 cut(s) 901
AccB1I GGYRCC 3 cut(s) 338, 618, 901
AciI CCGC 2 cut(s) 172, 741
AclWI GGATC 3 cut(s) 313, 369, 580
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 741
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 6 cut(s) 106, 387, 661, 880, 903, 993
AfiI CCNNNNNNNGG 3 cut(s) 217, 686, 864
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 2 cut(s) 14, 283
AhdI GACNNNNNGTC 1 cut(s) 835
AjiI CACGTC 1 cut(s) 805
AjnI CCWGG 2 cut(s) 293, 568
AluBI AGCT 3 cut(s) 30, 481, 1010
AluI AGCT 3 cut(s) 30, 481, 1010
Alw21I GWGCWC 2 cut(s) 634, 711
Alw26I GTCTC 2 cut(s) 410, 1084
AlwI GGATC 3 cut(s) 313, 369, 580
AlwNI CAGNNNCTG 1 cut(s) 911
AoxI GGCC 2 cut(s) 3, 818
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 2 cut(s) 794, 826
AsiGI ACCGGT 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 901
AspA2I CCTAGG 1 cut(s) 821
AspLEI GCGC 3 cut(s) 49, 171, 341
AspS9I GGNCC 4 cut(s) 92, 232, 566, 701
AsuC2I CCSGG 1 cut(s) 308
AvaII GGWCC 4 cut(s) 92, 232, 566, 701
AvrII CCTAGG 1 cut(s) 821
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 338, 618, 901
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 634, 711
BbvI GCAGC 1 cut(s) 112
BccI CCATC 3 cut(s) 329, 644, 781
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 2 cut(s) 295, 570
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 410, 1084
BfaI CTAG 2 cut(s) 822, 864
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 2 cut(s) 172, 342
BfuAI ACCTGC 1 cut(s) 606
BisI GCNGC 2 cut(s) 101, 172
BlnI CCTAGG 1 cut(s) 821
BlsI GCNGC 2 cut(s) 102, 173
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 3 cut(s) 295, 308, 570
Bme18I GGWCC 4 cut(s) 92, 232, 566, 701
BmeRI GACNNNNNGTC 1 cut(s) 835
BmgBI CACGTC 1 cut(s) 805
BmgT120I GGNCC 4 cut(s) 92, 232, 566, 701
BmiI GGNNCC 6 cut(s) 292, 340, 567, 620, 731, 903
BmrFI CCNGG 3 cut(s) 295, 308, 570
BmsI GCATC 4 cut(s) 183, 452, 582, 844
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 3 cut(s) 218, 695, 1004
BpuEI CTTGAG 3 cut(s) 96, 143, 669
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 1084
BsaJI CCNNGG 2 cut(s) 821, 891
BsaWI WCCGGW 2 cut(s) 94, 1042
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 686, 864
Bse118I RCCGGY 2 cut(s) 94, 857
Bse1I ACTGG 5 cut(s) 234, 712, 905, 941, 999
BseBI CCWGG 2 cut(s) 295, 570
BseDI CCNNGG 2 cut(s) 821, 891
BseGI GGATG 4 cut(s) 64, 198, 478, 859
BseLI CCNNNNNNNGG 3 cut(s) 217, 686, 864
BseNI ACTGG 5 cut(s) 234, 712, 905, 941, 999
BseRI GAGGAG 3 cut(s) 303, 593, 596
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 3 cut(s) 119, 654, 827
Bsh1285I CGRYCG 2 cut(s) 259, 791
BshFI GGCC 2 cut(s) 5, 820
BshNI GGYRCC 3 cut(s) 338, 618, 901
BshTI ACCGGT 1 cut(s) 94
BsiEI CGRYCG 2 cut(s) 259, 791
BsiHKAI GWGCWC 2 cut(s) 634, 711
BsiSI CCGG 4 cut(s) 95, 307, 858, 1043
BslFI GGGAC 4 cut(s) 141, 757, 943, 947
BslI CCNNNNNNNGG 3 cut(s) 217, 686, 864
BsmAI GTCTC 2 cut(s) 410, 1084
BsmFI GGGAC 4 cut(s) 141, 757, 943, 947
BsnI GGCC 2 cut(s) 5, 820
Bso31I GGTCTC 1 cut(s) 1084
Bsp1286I GDGCHC 2 cut(s) 634, 711
Bsp143I GATC 5 cut(s) 256, 318, 361, 372, 585
BspACI CCGC 2 cut(s) 172, 741
BspANI GGCC 2 cut(s) 5, 820
BspLI GGNNCC 6 cut(s) 292, 340, 567, 620, 731, 903
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 3 cut(s) 313, 369, 580
BspT107I GGYRCC 3 cut(s) 338, 618, 901
BspTNI GGTCTC 1 cut(s) 1084
BsrFI RCCGGY 2 cut(s) 94, 857
BsrI ACTGG 5 cut(s) 234, 712, 905, 941, 999
BssAI RCCGGY 2 cut(s) 94, 857
BssECI CCNNGG 2 cut(s) 821, 891
BssMI GATC 5 cut(s) 256, 318, 361, 372, 585
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 821, 891
Bst2UI CCWGG 2 cut(s) 295, 570
Bst4CI ACNGT 4 cut(s) 151, 236, 675, 789
Bst6I CTCTTC 1 cut(s) 923
BstACI GRCGYC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 28, 51, 1008
BstDEI CTNAG 3 cut(s) 420, 531, 1026
BstF5I GGATG 4 cut(s) 64, 198, 478, 859
BstH2I RGCGCY 2 cut(s) 172, 342
BstHHI GCGC 3 cut(s) 49, 171, 341
BstKTI GATC 5 cut(s) 259, 321, 364, 375, 588
BstMAI GTCTC 2 cut(s) 410, 1084
BstMBI GATC 5 cut(s) 256, 318, 361, 372, 585
BstMCI CGRYCG 2 cut(s) 259, 791
BstMWI GCNNNNNNNGC 2 cut(s) 32, 449
BstNI CCWGG 2 cut(s) 295, 570
BstSCI CCNGG 3 cut(s) 293, 306, 568
BstSFI CTRYAG 1 cut(s) 323
BstSNI TACGTA 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 361, 585
BstYI RGATCY 2 cut(s) 361, 585
BsuRI GGCC 2 cut(s) 5, 820
BtrI CACGTC 1 cut(s) 805
BtsCI GGATG 4 cut(s) 64, 198, 478, 859
BtsI GCAGTG 1 cut(s) 903
BtsIMutI CAGTG 3 cut(s) 227, 903, 912
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 3 cut(s) 28, 51, 1008
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 3 cut(s) 49, 171, 341
Cfr10I RCCGGY 2 cut(s) 94, 857
Cfr13I GGNCC 4 cut(s) 92, 232, 566, 701
CseI GACGC 1 cut(s) 138
Csp6I GTAC 6 cut(s) 105, 386, 660, 879, 902, 992
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 7 cut(s) 19, 73, 521, 779, 919, 977, 1083
CviQI GTAC 6 cut(s) 105, 386, 660, 879, 902, 992
DdeI CTNAG 3 cut(s) 420, 531, 1026
DinI GGCGCC 1 cut(s) 340
DpnI GATC 5 cut(s) 258, 320, 363, 374, 587
DpnII GATC 5 cut(s) 256, 318, 361, 372, 585
DriI GACNNNNNGTC 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 923
Eam1105I GACNNNNNGTC 1 cut(s) 835
EarI CTCTTC 1 cut(s) 923
Eco105I TACGTA 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 821, 891
Eco147I AGGCCT 1 cut(s) 820
Eco31I GGTCTC 1 cut(s) 1084
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 4 cut(s) 92, 232, 566, 701
Eco57I CTGAAG 1 cut(s) 741
EcoRII CCWGG 2 cut(s) 293, 568
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 821, 891
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 2 cut(s) 821, 891
FaeI CATG 7 cut(s) 22, 76, 524, 782, 922, 980, 1086
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 4 cut(s) 141, 757, 943, 947
FatI CATG 7 cut(s) 18, 72, 520, 778, 918, 976, 1082
FauI CCCGC 1 cut(s) 734
Fnu4HI GCNGC 2 cut(s) 101, 172
FokI GGATG 4 cut(s) 71, 205, 485, 866
Fsp4HI GCNGC 2 cut(s) 101, 172
FspBI CTAG 2 cut(s) 822, 864
GlaI GCGC 3 cut(s) 48, 170, 340
GluI GCNGC 2 cut(s) 101, 172
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 3 cut(s) 218, 695, 1004
HaeII RGCGCY 2 cut(s) 172, 342
HaeIII GGCC 2 cut(s) 5, 820
HapII CCGG 4 cut(s) 95, 307, 858, 1043
HgaI GACGC 1 cut(s) 138
HhaI GCGC 3 cut(s) 49, 171, 341
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 7 cut(s) 22, 76, 524, 782, 922, 980, 1086
Hin6I GCGC 3 cut(s) 47, 169, 339
HinP1I GCGC 3 cut(s) 47, 169, 339
HindIII AAGCTT 2 cut(s) 479, 1008
HinfI GANTC 5 cut(s) 207, 214, 298, 914, 1046
HpaII CCGG 4 cut(s) 95, 307, 858, 1043
Hpy166II GTNNAC 3 cut(s) 70, 660, 798
Hpy188I TCNGA 4 cut(s) 138, 546, 951, 1095
Hpy188III TCNNGA 5 cut(s) 211, 218, 280, 464, 983
Hpy8I GTNNAC 3 cut(s) 70, 660, 798
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 5 cut(s) 196, 277, 716, 820, 992
HpyCH4III ACNGT 4 cut(s) 151, 236, 675, 789
HpyCH4IV ACGT 3 cut(s) 388, 804, 1069
HpyCH4V TGCA 6 cut(s) 100, 270, 325, 671, 808, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 449
HpyF3I CTNAG 3 cut(s) 420, 531, 1026
HpySE526I ACGT 3 cut(s) 388, 804, 1069
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 7 cut(s) 22, 76, 524, 782, 922, 980, 1086
HspAI GCGC 3 cut(s) 47, 169, 339
KasI GGCGCC 1 cut(s) 338
KpnI GGTACC 1 cut(s) 905
Kzo9I GATC 5 cut(s) 256, 318, 361, 372, 585
LmnI GCTCC 2 cut(s) 290, 714
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 4 cut(s) 183, 452, 582, 844
MaeI CTAG 2 cut(s) 822, 864
MaeII ACGT 3 cut(s) 388, 804, 1069
MaeIII GTNAC 1 cut(s) 907
MalI GATC 5 cut(s) 258, 320, 363, 374, 587
MboI GATC 5 cut(s) 256, 318, 361, 372, 585
MboII GAAGA 4 cut(s) 26, 113, 940, 979
MfeI CAATTG 1 cut(s) 734
MflI RGATCY 2 cut(s) 361, 585
MhlI GDGCHC 2 cut(s) 634, 711
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 80, 604, 625, 734, 1037
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 339
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 206
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 303, 486
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 95, 307, 858, 1043
MspR9I CCNGG 3 cut(s) 295, 308, 570
MunI CAATTG 1 cut(s) 734
MvaI CCWGG 2 cut(s) 295, 570
MwoI GCNNNNNNNGC 2 cut(s) 32, 449
NarI GGCGCC 1 cut(s) 339
NciI CCSGG 1 cut(s) 308
NdeII GATC 5 cut(s) 256, 318, 361, 372, 585
NlaIII CATG 7 cut(s) 22, 76, 524, 782, 922, 980, 1086
NlaIV GGNNCC 6 cut(s) 292, 340, 567, 620, 731, 903
NmuCI GTSAC 1 cut(s) 907
PaqCI CACCTGC 1 cut(s) 606
PceI AGGCCT 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 5 cut(s) 207, 214, 298, 914, 1046
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 2 cut(s) 102, 173
Ple19I CGATCG 1 cut(s) 259
PluTI GGCGCC 1 cut(s) 342
Ppu21I YACGTR 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 293, 568
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 2 cut(s) 293, 568
PspN4I GGNNCC 6 cut(s) 292, 340, 567, 620, 731, 903
PspPI GGNCC 4 cut(s) 92, 232, 566, 701
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 361, 585
PvuI CGATCG 1 cut(s) 259
RsaI GTAC 6 cut(s) 106, 387, 661, 880, 903, 993
RsaNI GTAC 6 cut(s) 105, 386, 660, 879, 902, 992
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 2 cut(s) 303, 486
SatI GCNGC 2 cut(s) 101, 172
Sau3AI GATC 5 cut(s) 256, 318, 361, 372, 585
Sau96I GGNCC 4 cut(s) 92, 232, 566, 701
SbfI CCTGCAGG 1 cut(s) 327
ScaI AGTACT 1 cut(s) 993
ScrFI CCNGG 3 cut(s) 295, 308, 570
SdaI CCTGCAGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 634, 711
SfaNI GCATC 4 cut(s) 183, 452, 582, 844
SfcI CTRYAG 1 cut(s) 323
SfoI GGCGCC 1 cut(s) 340
SinI GGWCC 4 cut(s) 92, 232, 566, 701
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 3 cut(s) 111, 158, 684
SmoI CTYRAG 3 cut(s) 111, 158, 684
SnaBI TACGTA 1 cut(s) 389
Sse8387I CCTGCAGG 1 cut(s) 327
Sse9I AATT 5 cut(s) 80, 604, 625, 734, 1037
SseBI AGGCCT 1 cut(s) 820
SsiI CCGC 2 cut(s) 172, 741
SspDI GGCGCC 1 cut(s) 338
SspI AATATT 2 cut(s) 400, 430
SspMI CTAG 2 cut(s) 822, 864
StuI AGGCCT 1 cut(s) 820
StyD4I CCNGG 3 cut(s) 293, 306, 568
StyI CCWWGG 2 cut(s) 821, 891
TaaI ACNGT 4 cut(s) 151, 236, 675, 789
TaiI ACGT 3 cut(s) 391, 807, 1072
TaqI TCGA 2 cut(s) 371, 576
TasI AATT 5 cut(s) 80, 604, 625, 734, 1037
TatI WGTACW 3 cut(s) 659, 878, 991
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 5 cut(s) 207, 214, 298, 914, 1046
Tru1I TTAA 2 cut(s) 303, 486
Tru9I TTAA 2 cut(s) 303, 486
TscAI CASTG 3 cut(s) 234, 903, 912
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 4 cut(s) 449, 507, 632, 986
TspGWI ACGGA 2 cut(s) 815, 862
TspRI CASTG 3 cut(s) 234, 903, 912
VpaK11BI GGWCC 4 cut(s) 92, 232, 566, 701
XapI RAATTY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmaJI CCTAGG 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 822, 864
ZrmI AGTACT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.