Rorug02G0334700

Protein of unknown function (DUF642)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005921
Physical Location & Seq
Reverse (-)
41654349 .. 41656596
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0334700.1

Sequence Viewer

Length: 1473 bp
ATGGCGCGTAAAAGATATGCTAATTTACAAGAAGAATTGTTTGCGACAATCCCGATAGAGGAACTCGATCGTGCCATAATGTGGGTGAAAGCATGGCAAGACAAGAACGGTAACTTTAAAGCAGTTGAGGTGCAGCAGACGGCCAATAAAATTGAAAAGTTAAAGCAGAAAGAGTCTGATGGATCGCTTACCACACAAGGTTCTGATGATGTGCTCACCTTGGCATTGGGGAGATCCGAGCATCCTGGCAGGGTACGAGGAGTTGGTGGATATATCAAACCGGCTTCATTCTTTGACCTGCCTAAACGGCGAAAGAAAAGTGTTGAGGAGACAGTGAGGAAAAGTGTGAAGATGATAATGGAGGAGGAGAAGGAAACCATTCTTGCAAATGAAAGAGCTTTATGGCAGCAGGAGAGAGAAAGAGTGGTTGCTGAGGAGCGTGAATTTTGGACATCCAAGATTGCGGCTTTGGAGGCAAAGATTGATGGGAAGAAGATAGAGTCACCAAAACTTGTCACACCACTTCAGGATCCTGTGAAGAAGAGGTTGGTTTTAAATGATGATGATGGGCTGTTAGTTGAAGAGAACCATGAAGTATCAGAAGGGAAGGAAAAACTAACGGCAATAATCGAGGAGGAGGTTAGAAACATCATGGCTCCCAAAACTTCTGCAAATGATGATCTGGAGACAACTGCTGCGGTGCATGAGTGCGAACTGGCAGTAGATAGGGTGGACAACATTGTTGCTATTGGAACAATCATTCAAGACAATGTGCGCATCTCAGTCGTTCGAGCCATTGTTGATGATGCCCTGATACCTATTCCAGTGAATGATGAGATTGTCACTATCACCGACGCCATTGGTACTTGTGTTTCCTGGCCAAGAAACCTGGTTGTTACCCCTGGAGAAAAGGCACCCCCTAAAGCCATTGAGCATAAGAAAATAAAGCGTGTTAATACCAAGAAGAGAATGAGAGATGTATTTGATGACAATGAAGACCTTGAAAACTTGCCACCGAAACTGCCAATGACATTAAAGGATTTGTGCATGTGGGGAAACAATTTCCTTAGGGACGGGGTCACCATCCACACAACATTTGCTGCGGAACTTTTCGGCCATTCAAAGAAAGCCTTTCTGTTCAGAACCAATCTCTATACCATGGCCAACAAGTTGGAAGTATCAAATCGTGTACTTGTGTTTTACATGAGTTACCTTCATGAAGTCTTGAAGAAGTGTAAGATGGTGGATATGGTCGCCTTTGTTGATCCTGATCAGACTGGTACACATGGGTGTGGAAATCCCATTGACAGGGCTTGGTCTTTGTCAGATCAGTATAGGCAAGGGAGGTTAGGGCAGATCTTTGTGGTTCCATATAACTCTGGTGCTCATTGGATGTTGACGGTTGTGAACCCAAATGAAGAAGTCGTGCACTTCATGGATCCACTTAAAAGGCGACTTCATATTGGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF642

Protein Analysis

490

Amino Acids

55.67

Weight (kDa)

6.2

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 257 - 300 4.6e-06 Domain of unknown function (DUF8039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 776
Acc36I ACCTGC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 913
AccB7I CCANNNNNTGG 1 cut(s) 81
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 464, 698, 1103
AclWI GGATC 7 cut(s) 190, 228, 524, 537, 1259, 1433, 1446
AcoI YGGCCR 4 cut(s) 141, 878, 1114, 1161
AcsI RAATTY 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 4 cut(s) 255, 865, 1191, 1282
AfiI CCNNNNNNNGG 3 cut(s) 58, 81, 1308
AgsI TTSAA 6 cut(s) 155, 581, 764, 1004, 1122, 1228
AjnI CCWGG 4 cut(s) 244, 875, 888, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AleI CACNNNNGTG 1 cut(s) 1288
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw21I GWGCWC 3 cut(s) 216, 1387, 1431
Alw26I GTCTC 2 cut(s) 323, 680
Alw44I GTGCAC 1 cut(s) 1427
AlwI GGATC 7 cut(s) 190, 228, 524, 537, 1259, 1433, 1446
AoxI GGCC 4 cut(s) 141, 878, 1114, 1161
ApaLI GTGCAC 1 cut(s) 1427
ApeKI GCWGC 4 cut(s) 133, 406, 695, 1100
ApoI RAATTY 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 7, 777
AsuHPI GGTGA 5 cut(s) 97, 208, 495, 841, 1072
AxyI CCTNAGG 1 cut(s) 1067
BaeGI GKGCMC 1 cut(s) 1431
BaeI ACNNNNGTAYC 2 cut(s) 855, 888
BalI TGGCCA 2 cut(s) 880, 1163
BamHI GGATCC 2 cut(s) 529, 1438
BanI GGYRCC 1 cut(s) 913
BbsI GAAGAC 1 cut(s) 1002
Bbv12I GWGCWC 3 cut(s) 216, 1387, 1431
BbvCI CCTCAGC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 145, 418, 682, 1087
BccI CCATC 5 cut(s) 173, 479, 560, 1091, 1234
BceAI ACGGC 3 cut(s) 156, 323, 636
BcgI CGANNNNNNTGC 2 cut(s) 766, 800
BciT130I CCWGG 4 cut(s) 246, 877, 890, 903
BclI TGATCA 1 cut(s) 1270
BcoDI GTCTC 2 cut(s) 323, 680
BfuAI ACCTGC 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 307
BglII AGATCT 1 cut(s) 1356
BisI GCNGC 5 cut(s) 134, 407, 465, 696, 1101
BlsI GCNGC 5 cut(s) 135, 408, 466, 697, 1102
Bme1390I CCNGG 4 cut(s) 246, 877, 890, 903
BmiI GGNNCC 5 cut(s) 531, 657, 915, 1368, 1440
BmrFI CCNGG 4 cut(s) 246, 877, 890, 903
BmsI GCATC 3 cut(s) 250, 786, 796
BpiI GAAGAC 1 cut(s) 1002
BpmI CTGGAG 2 cut(s) 704, 924
Bpu10I CCTNAGC 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 1269
BsaHI GRCGYC 1 cut(s) 855
BsaJI CCNNGG 3 cut(s) 219, 901, 1158
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 81, 1308
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 3 cut(s) 720, 824, 1282
Bse21I CCTNAGG 1 cut(s) 1067
Bse8I GATNNNNATC 1 cut(s) 1269
BseBI CCWGG 4 cut(s) 246, 877, 890, 903
BseDI CCNNGG 3 cut(s) 219, 901, 1158
BseGI GGATG 4 cut(s) 241, 452, 1083, 1398
BseJI GATNNNNATC 1 cut(s) 1269
BseLI CCNNNNNNNGG 3 cut(s) 58, 81, 1308
BseMII CTCAG 2 cut(s) 423, 795
BseNI ACTGG 3 cut(s) 720, 824, 1282
BseRI GAGGAG 7 cut(s) 273, 341, 377, 380, 449, 647, 650
BseSI GKGCMC 1 cut(s) 1431
BseXI GCAGC 4 cut(s) 145, 418, 682, 1087
BsgI GTGCAG 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 143, 880, 1116, 1163
BshNI GGYRCC 1 cut(s) 913
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 3 cut(s) 216, 1387, 1431
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 1085
BslI CCNNNNNNNGG 3 cut(s) 58, 81, 1308
BsmAI GTCTC 2 cut(s) 323, 680
BsmFI GGGAC 1 cut(s) 1085
BsnI GGCC 4 cut(s) 143, 880, 1116, 1163
Bsp1286I GDGCHC 3 cut(s) 216, 1387, 1431
Bsp19I CCATGG 1 cut(s) 1158
BspACI CCGC 3 cut(s) 464, 698, 1103
BspANI GGCC 4 cut(s) 143, 880, 1116, 1163
BspCNI CTCAG 2 cut(s) 424, 794
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 1216
BspLI GGNNCC 5 cut(s) 531, 657, 915, 1368, 1440
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 7 cut(s) 190, 228, 524, 537, 1259, 1433, 1446
BspT107I GGYRCC 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 3 cut(s) 720, 824, 1282
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 3 cut(s) 219, 901, 1158
BssNI GRCGYC 1 cut(s) 855
BssT1I CCWWGG 2 cut(s) 219, 1158
Bst2UI CCWGG 4 cut(s) 246, 877, 890, 903
Bst4CI ACNGT 3 cut(s) 110, 334, 1402
Bst6I CTCTTC 3 cut(s) 536, 576, 959
BstACI GRCGYC 1 cut(s) 855
BstDEI CTNAG 3 cut(s) 432, 781, 1067
BstDSI CCRYGG 1 cut(s) 1158
BstEII GGTNACC 1 cut(s) 1078
BstF5I GGATG 4 cut(s) 241, 452, 1083, 1398
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 2 cut(s) 7, 777
BstMAI GTCTC 2 cut(s) 323, 680
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 307, 473
BstNI CCWGG 4 cut(s) 246, 877, 890, 903
BstNSI RCATGY 1 cut(s) 1051
BstPI GGTNACC 1 cut(s) 1078
BstSCI CCNGG 4 cut(s) 244, 875, 888, 901
BstSLI GKGCMC 1 cut(s) 1431
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 4 cut(s) 145, 418, 682, 1087
BstV2I GAAGAC 1 cut(s) 1002
BstX2I RGATCY 4 cut(s) 233, 529, 1356, 1438
BstXI CCANNNNNNTGG 1 cut(s) 1171
BstYI RGATCY 4 cut(s) 233, 529, 1356, 1438
Bsu36I CCTNAGG 1 cut(s) 1067
BsuRI GGCC 4 cut(s) 143, 880, 1116, 1163
BtgI CCRYGG 1 cut(s) 1158
BtsCI GGATG 4 cut(s) 241, 452, 1083, 1398
BtsIMutI CAGTG 2 cut(s) 339, 831
BveI ACCTGC 1 cut(s) 306
CciI TCATGA 1 cut(s) 1216
CfoI GCGC 2 cut(s) 7, 777
Cfr10I RCCGGY 1 cut(s) 280
CseI GACGC 1 cut(s) 863
CsiI ACCWGGT 1 cut(s) 888
Csp6I GTAC 4 cut(s) 254, 864, 1190, 1281
CviQI GTAC 4 cut(s) 254, 864, 1190, 1281
DdeI CTNAG 3 cut(s) 432, 781, 1067
DraI TTTAAA 2 cut(s) 118, 555
EaeI YGGCCR 4 cut(s) 141, 878, 1114, 1161
Eam1104I CTCTTC 3 cut(s) 536, 576, 959
EarI CTCTTC 3 cut(s) 536, 576, 959
Eco130I CCWWGG 2 cut(s) 219, 1158
Eco57I CTGAAG 1 cut(s) 509
Eco81I CCTNAGG 1 cut(s) 1067
Eco91I GGTNACC 1 cut(s) 1078
EcoO65I GGTNACC 1 cut(s) 1078
EcoRII CCWGG 4 cut(s) 244, 875, 888, 901
EcoT14I CCWWGG 2 cut(s) 219, 1158
ErhI CCWWGG 2 cut(s) 219, 1158
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 1 cut(s) 1085
FbaI TGATCA 1 cut(s) 1270
Fnu4HI GCNGC 5 cut(s) 134, 407, 465, 696, 1101
FokI GGATG 4 cut(s) 228, 439, 1070, 1405
Fsp4HI GCNGC 5 cut(s) 134, 407, 465, 696, 1101
FspAI RTGCGCAY 1 cut(s) 776
FspI TGCGCA 1 cut(s) 776
GlaI GCGC 2 cut(s) 6, 776
GluI GCNGC 5 cut(s) 134, 407, 465, 696, 1101
GsuI CTGGAG 2 cut(s) 704, 924
HaeIII GGCC 4 cut(s) 143, 880, 1116, 1163
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 863
HhaI GCGC 2 cut(s) 7, 777
Hin1I GRCGYC 1 cut(s) 855
Hin6I GCGC 2 cut(s) 5, 775
HinP1I GCGC 2 cut(s) 5, 775
HincII GTYRAC 1 cut(s) 1398
HindII GTYRAC 1 cut(s) 1398
HinfI GANTC 2 cut(s) 173, 500
HpaII CCGG 1 cut(s) 281
HphI GGTGA 5 cut(s) 97, 208, 495, 841, 1072
Hpy166II GTNNAC 6 cut(s) 733, 1190, 1283, 1398, 1408, 1429
Hpy188I TCNGA 7 cut(s) 178, 205, 238, 601, 1142, 1275, 1327
Hpy188III TCNNGA 7 cut(s) 52, 527, 683, 764, 1217, 1225, 1268
Hpy8I GTNNAC 6 cut(s) 733, 1190, 1283, 1398, 1408, 1429
Hpy99I CGWCG 1 cut(s) 857
HpyAV CCTTC 4 cut(s) 364, 596, 601, 1223
HpyCH4III ACNGT 3 cut(s) 110, 334, 1402
HpyCH4V TGCA 6 cut(s) 133, 386, 671, 703, 1047, 1429
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 473
HpyF3I CTNAG 3 cut(s) 432, 781, 1067
Hsp92I GRCGYC 1 cut(s) 855
HspAI GCGC 2 cut(s) 5, 775
Ksp22I TGATCA 1 cut(s) 1270
LmnI GCTCC 2 cut(s) 436, 661
Lsp1109I GCAGC 4 cut(s) 145, 418, 682, 1087
LweI GCATC 3 cut(s) 250, 786, 796
MabI ACCWGGT 1 cut(s) 888
MaeIII GTNAC 7 cut(s) 110, 501, 514, 841, 895, 1078, 1208
MflI RGATCY 4 cut(s) 233, 529, 1356, 1438
MhlI GDGCHC 3 cut(s) 216, 1387, 1431
MlsI TGGCCA 2 cut(s) 880, 1163
MluCI AATT 5 cut(s) 22, 35, 150, 443, 1060
MluNI TGGCCA 2 cut(s) 880, 1163
MlyI GAGTC 2 cut(s) 182, 509
MmeI TCCRAC 1 cut(s) 1152
Mox20I TGGCCA 2 cut(s) 880, 1163
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 2 cut(s) 880, 1163
MseI TTAA 6 cut(s) 117, 161, 554, 954, 1034, 1446
MslI CAYNNNNRTG 3 cut(s) 1288, 1290, 1464
Msp20I TGGCCA 2 cut(s) 880, 1163
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 4 cut(s) 246, 877, 890, 903
MvaI CCWGG 4 cut(s) 246, 877, 890, 903
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 307, 473
NcoI CCATGG 1 cut(s) 1158
NlaIV GGNNCC 5 cut(s) 531, 657, 915, 1368, 1440
NmuCI GTSAC 4 cut(s) 501, 514, 841, 1078
NsbI TGCGCA 1 cut(s) 776
NspI RCATGY 1 cut(s) 1051
OliI CACNNNNGTG 1 cut(s) 1288
PagI TCATGA 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 378
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 5 cut(s) 135, 408, 466, 697, 1102
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 2 cut(s) 181, 508
PpsI GAGTC 2 cut(s) 181, 508
Psp6I CCWGG 4 cut(s) 244, 875, 888, 901
PspEI GGTNACC 1 cut(s) 1078
PspGI CCWGG 4 cut(s) 244, 875, 888, 901
PspN4I GGNNCC 5 cut(s) 531, 657, 915, 1368, 1440
PsuI RGATCY 4 cut(s) 233, 529, 1356, 1438
PsyI GACNNNGTC 1 cut(s) 1076
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 4 cut(s) 255, 865, 1191, 1282
RsaNI GTAC 4 cut(s) 254, 864, 1190, 1281
RseI CAYNNNNRTG 3 cut(s) 1288, 1290, 1464
SaqAI TTAA 6 cut(s) 117, 161, 554, 954, 1034, 1446
SatI GCNGC 5 cut(s) 134, 407, 465, 696, 1101
SchI GAGTC 2 cut(s) 182, 509
ScrFI CCNGG 4 cut(s) 246, 877, 890, 903
SduI GDGCHC 3 cut(s) 216, 1387, 1431
SexAI ACCWGGT 1 cut(s) 888
SfaNI GCATC 3 cut(s) 250, 786, 796
SmiMI CAYNNNNRTG 3 cut(s) 1288, 1290, 1464
Sse9I AATT 5 cut(s) 22, 35, 150, 443, 1060
SsiI CCGC 3 cut(s) 464, 698, 1103
StyD4I CCNGG 4 cut(s) 244, 875, 888, 901
StyI CCWWGG 2 cut(s) 219, 1158
TaaI ACNGT 3 cut(s) 110, 334, 1402
TaqI TCGA 3 cut(s) 66, 630, 790
TasI AATT 5 cut(s) 22, 35, 150, 443, 1060
TatI WGTACW 1 cut(s) 1189
TauI GCSGC 1 cut(s) 467
Tru1I TTAA 6 cut(s) 117, 161, 554, 954, 1034, 1446
Tru9I TTAA 6 cut(s) 117, 161, 554, 954, 1034, 1446
TscAI CASTG 2 cut(s) 339, 831
TseFI GTSAC 4 cut(s) 501, 514, 841, 1078
TseI GCWGC 4 cut(s) 133, 406, 695, 1100
Tsp45I GTSAC 4 cut(s) 501, 514, 841, 1078
TspDTI ATGAA 9 cut(s) 276, 405, 606, 1008, 1205, 1233, 1423, 1431, 1448
TspRI CASTG 2 cut(s) 339, 831
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 81
VneI GTGCAC 1 cut(s) 1427
XapI RAATTY 1 cut(s) 443
XceI RCATGY 1 cut(s) 1051
XmnI GAANNNNTTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.