Rh2DG408000

Protein of unknown function (DUF642)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
59122651 .. 59128212
5562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG408000.1

Sequence Viewer

Length: 1119 bp
ATGTACAAACTCACTGCGCTATTGGTGCTACTATGCGCTGGTTGCCACACAAGTTTATCTGCTCCTACTGATGGTCTATTACCGAATGGCAACTTCGAGTATGGCCCTAAACCGTCACAAATGAAAGGCACGGTAGTAACAGCCCACAATGCCATTCCCAACTGGGAAACCTCAGGCCATATTGAATACATAAAATCCGGCCACAAGCAAGGCGACATTTTGCTGGTGGTTCCCGAGGGTGGCTTCGCCATCAGGCTTGGAAACGACGCCTCGATCAAGCAGAAGATCAAGGTGACCAATGGCGGCTTCTACTCCATAACGTTCAGTGCGGCCCATACGTGTGCACAAGAGGAGACGGTGAACATTTCAGTAAATCCCAACATTGAGAAACAAGACTTTGGCATAATTCCGGTTCAGACCACGTACAGCAACACTGGGTGGGATTCATATTCTTGGGGCTTTAACGCTTTTGCTGATGAGATTGAGGTAACCATCCATAACCCGGGGGTGGAGGAGGATCCGGCTTGTGGCCCGCTAATCGATTCGGTTGCTTTGAAGGTCATGGAGATTCCTCAACGAACTAGAGCCAACTTGTTGAAGAATGGCAACTTTGAAGAAGGACCTTATTTGTTTCCCAACACATCATGGGGTGTCCTCATCCCACCCCACATCGAAGATGACCACAGTCCACTACCAGGCTGGATCATCGAATCCCTCAAGGCCGTTAAATACATCGACTCCAATCACTACACCGTCCCCGAAGGTCGAAGAGCCATCGAGCTTGTCGCCGGAAAAGAGAGCGAATTGACCCAAGTGGTCTTCACCAAGCCCGGCAGGCGCTACGCCCTCACATTCTTCGTTGGCGACAGCAACAACCGCTGCCAAGGCTCCCTCGTTGTCGAGGCATTTGCCGGCAAGGACACGGTGAAGGTTCCTTACGAGTCCAAAGGCGAAGGAGGGTTCAAGAAGGCCAGGCTCCTCTTCACCGCCGTGTCGCCGCGCACACGTATCATGTTTCTGAGCACTTTCTATACCATATCGAGCGATCACTCCGGCTGTCTGTGTGGTCCGGTGATCGATGATATCAAATTGCTCAGCATTCGCGGACGACGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

372

Amino Acids

40.74

Weight (kDa)

6.22

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 25 - 186 2.5e-66 Protein of unknown function (DUF642)
DUF642 PF04862 197 - 363 1e-15 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1000, 1104
AciI CCGC 7 cut(s) 303, 329, 533, 877, 987, 998, 1104
AclI AACGTT 1 cut(s) 320
AclWI GGATC 3 cut(s) 512, 525, 710
AcoI YGGCCR 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 438
AfaI GTAC 2 cut(s) 5, 425
AfiI CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
AflIII ACRYGT 3 cut(s) 338, 1004, 1111
AgsI TTSAA 5 cut(s) 185, 556, 598, 614, 964
AjiI CACGTC 1 cut(s) 1112
AjnI CCWGG 2 cut(s) 694, 971
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AleI CACNNNNGTG 1 cut(s) 989
AluBI AGCT 1 cut(s) 781
AluI AGCT 1 cut(s) 781
Alw21I GWGCWC 2 cut(s) 346, 1025
Alw26I GTCTC 1 cut(s) 347
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 3 cut(s) 512, 525, 710
Ama87I CYCGRG 2 cut(s) 233, 502
AoxI GGCC 7 cut(s) 103, 175, 199, 330, 529, 720, 969
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 879
AspLEI GCGC 4 cut(s) 19, 38, 840, 1002
AspS9I GGNCC 5 cut(s) 104, 331, 530, 620, 1067
AsuC2I CCSGG 3 cut(s) 503, 504, 831
AsuHPI GGTGA 6 cut(s) 304, 370, 814, 937, 976, 1084
AvaI CYCGRG 2 cut(s) 233, 502
AvaII GGWCC 2 cut(s) 620, 1067
AxyI CCTNAGG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 346
BamHI GGATCC 1 cut(s) 517
BarI GAAGNNNNNNTAC 2 cut(s) 920, 952
BbsI GAAGAC 1 cut(s) 811
Bbv12I GWGCWC 2 cut(s) 346, 1025
BbvI GCAGC 1 cut(s) 866
BccI CCATC 4 cut(s) 65, 257, 500, 782
BceAI ACGGC 2 cut(s) 707, 974
BcgI CGANNNNNNTGC 4 cut(s) 530, 564, 890, 924
BciT130I CCWGG 2 cut(s) 696, 973
BcnI CCSGG 3 cut(s) 503, 504, 831
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 841
BglI GCCNNNNNGGC 1 cut(s) 835
BisI GCNGC 4 cut(s) 304, 330, 880, 998
BlpI GCTNAGC 1 cut(s) 1094
BlsI GCNGC 4 cut(s) 305, 331, 881, 999
Bme1390I CCNGG 5 cut(s) 503, 504, 696, 831, 973
Bme18I GGWCC 2 cut(s) 620, 1067
BmeT110I CYCGRG 2 cut(s) 233, 502
BmgBI CACGTC 1 cut(s) 1112
BmgT120I GGNCC 5 cut(s) 104, 331, 530, 620, 1067
BmiI GGNNCC 5 cut(s) 231, 519, 889, 933, 977
BmrFI CCNGG 5 cut(s) 503, 504, 696, 831, 973
BmrI ACTGGG 2 cut(s) 172, 444
BmuI ACTGGG 2 cut(s) 172, 444
BoxI GACNNNNGTC 1 cut(s) 684
BpiI GAAGAC 1 cut(s) 811
Bpu1102I GCTNAGC 1 cut(s) 1094
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 3 cut(s) 503, 504, 831
Bsa29I ATCGAT 2 cut(s) 540, 1077
BsaAI YACGTR 3 cut(s) 339, 423, 1007
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 234, 502, 503, 883
BsaWI WCCGGW 2 cut(s) 409, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
Bse118I RCCGGY 1 cut(s) 911
Bse1I ACTGG 2 cut(s) 167, 439
Bse21I CCTNAGG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 696, 973
BseCI ATCGAT 2 cut(s) 540, 1077
BseDI CCNNGG 4 cut(s) 234, 502, 503, 883
BseGI GGATG 2 cut(s) 492, 657
BseLI CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
BseMII CTCAG 3 cut(s) 186, 1010, 1108
BseNI ACTGG 2 cut(s) 167, 439
BseRI GAGGAG 3 cut(s) 365, 527, 968
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 1 cut(s) 866
Bsh1236I CGCG 2 cut(s) 1000, 1104
BshFI GGCC 7 cut(s) 105, 177, 201, 332, 531, 722, 971
BshVI ATCGAT 2 cut(s) 540, 1077
BsiHKAI GWGCWC 2 cut(s) 346, 1025
BsiHKCI CYCGRG 2 cut(s) 233, 502
BsiSI CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 6 cut(s) 71, 239, 502, 508, 527, 695
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 740
BsmI GAATGC 1 cut(s) 1098
BsnI GGCC 7 cut(s) 105, 177, 201, 332, 531, 722, 971
BsoBI CYCGRG 2 cut(s) 233, 502
Bsp1286I GDGCHC 2 cut(s) 346, 1025
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
Bsp1720I GCTNAGC 1 cut(s) 1094
BspACI CCGC 7 cut(s) 303, 329, 533, 877, 987, 998, 1104
BspANI GGCC 7 cut(s) 105, 177, 201, 332, 531, 722, 971
BspCNI CTCAG 3 cut(s) 185, 1011, 1107
BspDI ATCGAT 2 cut(s) 540, 1077
BspFNI CGCG 2 cut(s) 1000, 1104
BspLI GGNNCC 5 cut(s) 231, 519, 889, 933, 977
BspPI GGATC 3 cut(s) 512, 525, 710
BspQI GCTCTTC 1 cut(s) 763
BsrFI RCCGGY 1 cut(s) 911
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 167, 439
BssAI RCCGGY 1 cut(s) 911
BssECI CCNNGG 4 cut(s) 234, 502, 503, 883
BssMI GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 883
Bst2UI CCWGG 2 cut(s) 696, 973
Bst4CI ACNGT 6 cut(s) 114, 133, 358, 686, 754, 925
Bst6I CTCTTC 2 cut(s) 763, 986
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 3 cut(s) 339, 423, 1007
BstC8I GCNNGC 3 cut(s) 533, 836, 913
BstDEI CTNAG 3 cut(s) 172, 1019, 1094
BstEII GGTNACC 2 cut(s) 292, 487
BstF5I GGATG 2 cut(s) 492, 657
BstFNI CGCG 2 cut(s) 1000, 1104
BstH2I RGCGCY 1 cut(s) 841
BstHHI GCGC 4 cut(s) 19, 38, 840, 1002
BstKTI GATC 6 cut(s) 276, 288, 520, 705, 1048, 1077
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
BstMWI GCNNNNNNNGC 6 cut(s) 25, 42, 149, 835, 876, 885
BstNI CCWGG 2 cut(s) 696, 973
BstPAI GACNNNNGTC 1 cut(s) 684
BstPI GGTNACC 2 cut(s) 292, 487
BstSCI CCNGG 5 cut(s) 501, 502, 694, 829, 971
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 2 cut(s) 1000, 1104
BstV1I GCAGC 1 cut(s) 866
BstV2I GAAGAC 1 cut(s) 811
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu15I ATCGAT 2 cut(s) 540, 1077
Bsu36I CCTNAGG 1 cut(s) 172
BsuRI GGCC 7 cut(s) 105, 177, 201, 332, 531, 722, 971
BsuTUI ATCGAT 2 cut(s) 540, 1077
BtrI CACGTC 1 cut(s) 1112
BtsCI GGATG 2 cut(s) 492, 657
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 331, 432
Cac8I GCNNGC 3 cut(s) 533, 836, 913
CfoI GCGC 4 cut(s) 19, 38, 840, 1002
Cfr10I RCCGGY 1 cut(s) 911
Cfr13I GGNCC 5 cut(s) 104, 331, 530, 620, 1067
Cfr9I CCCGGG 1 cut(s) 502
ClaI ATCGAT 2 cut(s) 540, 1077
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 4, 424
CviAII CATG 3 cut(s) 562, 645, 1012
CviQI GTAC 2 cut(s) 4, 424
DdeI CTNAG 3 cut(s) 172, 1019, 1094
DpnI GATC 6 cut(s) 275, 287, 519, 704, 1047, 1076
DpnII GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
DraIII CACNNNGTG 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 763, 986
EarI CTCTTC 2 cut(s) 763, 986
Eco130I CCWWGG 1 cut(s) 883
Eco32I GATATC 1 cut(s) 1084
Eco47I GGWCC 2 cut(s) 620, 1067
Eco81I CCTNAGG 1 cut(s) 172
Eco88I CYCGRG 2 cut(s) 233, 502
Eco91I GGTNACC 2 cut(s) 292, 487
EcoO109I RGGNCCY 1 cut(s) 620
EcoO65I GGTNACC 2 cut(s) 292, 487
EcoRII CCWGG 2 cut(s) 694, 971
EcoRV GATATC 1 cut(s) 1084
EcoT14I CCWWGG 1 cut(s) 883
ErhI CCWWGG 1 cut(s) 883
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 3 cut(s) 565, 648, 1015
FaqI GGGAC 1 cut(s) 740
FatI CATG 3 cut(s) 561, 644, 1011
FauI CCCGC 1 cut(s) 540
Fnu4HI GCNGC 4 cut(s) 304, 330, 880, 998
FokI GGATG 2 cut(s) 479, 644
Fsp4HI GCNGC 4 cut(s) 304, 330, 880, 998
FspBI CTAG 1 cut(s) 582
GlaI GCGC 4 cut(s) 18, 37, 839, 1001
GluI GCNGC 4 cut(s) 304, 330, 880, 998
HaeII RGCGCY 1 cut(s) 841
HaeIII GGCC 7 cut(s) 105, 177, 201, 332, 531, 722, 971
HapII CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
HgaI GACGC 1 cut(s) 275
HhaI GCGC 4 cut(s) 19, 38, 840, 1002
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 3 cut(s) 565, 648, 1015
Hin6I GCGC 4 cut(s) 17, 36, 838, 1000
HinP1I GCGC 4 cut(s) 17, 36, 838, 1000
HinfI GANTC 6 cut(s) 443, 542, 568, 710, 737, 941
HpaII CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
HphI GGTGA 6 cut(s) 304, 370, 814, 937, 976, 1084
Hpy166II GTNNAC 3 cut(s) 344, 361, 689
Hpy188I TCNGA 2 cut(s) 417, 1020
Hpy188III TCNNGA 2 cut(s) 233, 964
Hpy8I GTNNAC 3 cut(s) 344, 361, 689
Hpy99I CGWCG 2 cut(s) 269, 1113
HpyAV CCTTC 6 cut(s) 550, 611, 755, 922, 947, 961
HpyCH4III ACNGT 6 cut(s) 114, 133, 358, 686, 754, 925
HpyCH4IV ACGT 5 cut(s) 320, 338, 422, 1006, 1111
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 42, 149, 835, 876, 885
HpyF3I CTNAG 3 cut(s) 172, 1019, 1094
HpySE526I ACGT 5 cut(s) 320, 338, 422, 1006, 1111
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 3 cut(s) 565, 648, 1015
HspAI GCGC 4 cut(s) 17, 36, 838, 1000
KroI GCCGGC 1 cut(s) 911
KroNI GCCGGC 1 cut(s) 913
Kzo9I GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
LguI GCTCTTC 1 cut(s) 763
LmnI GCTCC 3 cut(s) 67, 893, 981
Lsp1109I GCAGC 1 cut(s) 866
MaeI CTAG 1 cut(s) 582
MaeII ACGT 5 cut(s) 320, 338, 422, 1006, 1111
MaeIII GTNAC 4 cut(s) 114, 136, 292, 487
MalI GATC 6 cut(s) 275, 287, 519, 704, 1047, 1076
MboI GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
MboII GAAGA 8 cut(s) 295, 610, 626, 686, 780, 811, 847, 973
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 2 cut(s) 346, 1025
MluCI AATT 3 cut(s) 405, 803, 1088
MlyI GAGTC 2 cut(s) 731, 950
MroNI GCCGGC 1 cut(s) 911
MseI TTAA 3 cut(s) 462, 726, 1117
MslI CAYNNNNRTG 2 cut(s) 339, 989
MspA1I CMGCKG 1 cut(s) 879
MspI CCGG 9 cut(s) 198, 410, 503, 521, 789, 831, 912, 1053, 1070
MspR9I CCNGG 5 cut(s) 503, 504, 696, 831, 973
Mva1269I GAATGC 1 cut(s) 1098
MvaI CCWGG 2 cut(s) 696, 973
MvnI CGCG 2 cut(s) 1000, 1104
MwoI GCNNNNNNNGC 6 cut(s) 25, 42, 149, 835, 876, 885
NaeI GCCGGC 1 cut(s) 913
NciI CCSGG 3 cut(s) 503, 504, 831
NdeII GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
NgoMIV GCCGGC 1 cut(s) 911
NlaIII CATG 3 cut(s) 565, 648, 1015
NlaIV GGNNCC 5 cut(s) 231, 519, 889, 933, 977
NmuCI GTSAC 2 cut(s) 114, 292
OliI CACNNNNGTG 1 cut(s) 989
PciSI GCTCTTC 1 cut(s) 763
PcsI WCGNNNNNNNCGW 1 cut(s) 1108
PctI GAATGC 1 cut(s) 1098
PdiI GCCGGC 1 cut(s) 913
PfeI GAWTC 4 cut(s) 443, 542, 568, 710
PkrI GCNGC 4 cut(s) 305, 331, 881, 999
PleI GAGTC 2 cut(s) 731, 949
PpsI GAGTC 2 cut(s) 731, 949
Ppu21I YACGTR 3 cut(s) 339, 423, 1007
PpuMI RGGWCCY 1 cut(s) 620
PshAI GACNNNNGTC 1 cut(s) 684
Psp1406I AACGTT 1 cut(s) 320
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 694, 971
PspEI GGTNACC 2 cut(s) 292, 487
PspGI CCWGG 2 cut(s) 694, 971
PspN4I GGNNCC 5 cut(s) 231, 519, 889, 933, 977
PspPI GGNCC 5 cut(s) 104, 331, 530, 620, 1067
PspPPI RGGWCCY 1 cut(s) 620
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 2 cut(s) 5, 425
RsaNI GTAC 2 cut(s) 4, 424
RseI CAYNNNNRTG 2 cut(s) 339, 989
SapI GCTCTTC 1 cut(s) 763
SaqAI TTAA 3 cut(s) 462, 726, 1117
SatI GCNGC 4 cut(s) 304, 330, 880, 998
Sau3AI GATC 6 cut(s) 273, 285, 517, 702, 1045, 1074
Sau96I GGNCC 5 cut(s) 104, 331, 530, 620, 1067
SchI GAGTC 2 cut(s) 731, 950
ScrFI CCNGG 5 cut(s) 503, 504, 696, 831, 973
SduI GDGCHC 2 cut(s) 346, 1025
SinI GGWCC 2 cut(s) 620, 1067
SmaI CCCGGG 1 cut(s) 504
SmiMI CAYNNNNRTG 2 cut(s) 339, 989
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 3 cut(s) 405, 803, 1088
SsiI CCGC 7 cut(s) 303, 329, 533, 877, 987, 998, 1104
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 5 cut(s) 501, 502, 694, 829, 971
StyI CCWWGG 1 cut(s) 883
TaaI ACNGT 6 cut(s) 114, 133, 358, 686, 754, 925
TaiI ACGT 5 cut(s) 323, 341, 425, 1009, 1114
TasI AATT 3 cut(s) 405, 803, 1088
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 306, 332, 1000
TfiI GAWTC 4 cut(s) 443, 542, 568, 710
Tru1I TTAA 3 cut(s) 462, 726, 1117
Tru9I TTAA 3 cut(s) 462, 726, 1117
TscAI CASTG 3 cut(s) 19, 331, 439
TseFI GTSAC 2 cut(s) 114, 292
TseI GCWGC 1 cut(s) 879
Tsp45I GTSAC 2 cut(s) 114, 292
TspDTI ATGAA 2 cut(s) 137, 435
TspMI CCCGGG 1 cut(s) 502
TspRI CASTG 3 cut(s) 19, 331, 439
VneI GTGCAC 1 cut(s) 342
VpaK11BI GGWCC 2 cut(s) 620, 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmaI CCCGGG 1 cut(s) 502
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.