Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005921

Physical Location & Seq

Genomic Coordinates Forward (+)

41543272 .. 41548014

Gene Structure 4743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0334600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAAAGGAAGTTGGGACTCGGAACCAGATCACAGGGGAAGACGATTACACAATTCAGCGCCCAAATACAATGATTGGCCTGAGTTTTTTTATTCGAAGTATTGATGTGTGGCAGCAAGAAAAAGGGGTTATGTTCGCAATCTCCAGATCGGAATTGATTTCGATTTATTCCTCTTCCATCACAGAATATATGGATGCATTTCCCATGTCTACGTGGAGTGTTATATCAGTTCCTTTGGTGGATCTGGTCTCGTGGTTGGGTGGGCTTGAGGGGAACCCCATTGCAGTTAGCAGAGCTTCAAAGATGATGATGGTGTGTCCATGTTTGTTTAGATTGGACTCCTTTCGATGCTTCCACTGGTGGATATGGCTGCCTGGGGAGTGCACTAGTTCATTCAGCTGCTTCTTGTTATTGCTTACATTCTCATTGCTTGGGAGCAGATCTCCCTTAATTAAACTGAACTGGGTAACCCTCTTCAATGGAATGGTTGAGAGGCCTATGGATTTCGTGTCTAATTCAGAGCCATCCACCTGTAGTCCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF642

Protein Analysis

182

Amino Acids

20.67

Weight (kDa)

4.97

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005921)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30480
malus_domestica	MD17G1203500.v1.1
prunus_persica	Prupe.3G078400_v2.0.a1
pyrus_communis	pycom1094g00040 pycom17g20690
rosa_chinensis	RchiOBHm_Chr2g0136831 RchiOBHm_Chr2g0136841
rosa_laevigata	RLG00000019581 RLG00000019582
rosa_multiflora	Rmu_sc0001299.1_g000007 Rmu_sc0001299.1_g000009 Rmu_sc0001368.1_g000003 Rmu_sc0001368.1_g000004
rosa_roxburghii	Rroxscaffold_2G00107940
rosa_rugosa	Rorug02G0334400 Rorug02G0334500 Rorug02G0334600 Rorug02G0334700 Rorug02G0334800
rosa_samantha	Rh2AG384500 Rh2AG384700 Rh2BG391700 Rh2CG371100 Rh2CG371200 Rh2DG408000 Rh2DG408100
rosa_wichuraiana	Rw2G031450 Rw2G031460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	303, 481
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	2 cut(s)	299, 402
AluI	AGCT	2 cut(s)	299, 402
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	385
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	2 cut(s)	79, 497
ApaLI	GTGCAC	1 cut(s)	385
ApeKI	GCWGC	3 cut(s)	115, 373, 402
AspLEI	GCGC	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	389
BauI	CACGAG	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	127, 360, 389
BccI	CCATC	3 cut(s)	188, 307, 535
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	256
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	390, 547
BfmI	CTRYAG	1 cut(s)	535
BfoI	RGCGCY	1 cut(s)	64
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	3 cut(s)	116, 374, 403
BlsI	GCNGC	3 cut(s)	117, 375, 404
Bme1390I	CCNGG	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	26, 278
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	187, 341
BmuI	ACTGGG	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	377
Bse1I	ACTGG	3 cut(s)	365, 470, 542
Bse3DI	GCAATG	2 cut(s)	282, 428
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	202, 527
BseMI	GCAATG	2 cut(s)	282, 428
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	3 cut(s)	365, 470, 542
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	127, 360, 389
BshFI	GGCC	2 cut(s)	81, 499
BsiHKAI	GWGCWC	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	81, 499
Bso31I	GGTCTC	1 cut(s)	256
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	30, 149, 244, 443
BspANI	GGCC	2 cut(s)	81, 499
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	26, 278
BspPI	GGATC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	282, 428
BsrI	ACTGG	3 cut(s)	365, 470, 542
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	4 cut(s)	30, 149, 244, 443
BssSI	CACGAG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	181, 482
BstBAI	YACGTR	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	83
BstEII	GGTNACC	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	202, 527
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	4 cut(s)	33, 152, 247, 446
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	4 cut(s)	30, 149, 244, 443
BstNI	CCWGG	1 cut(s)	378
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	535
BstSLI	GKGCMC	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	127, 360, 389
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	2 cut(s)	244, 443
BstYI	RGATCY	2 cut(s)	244, 443
BsuRI	GGCC	2 cut(s)	81, 499
BtsCI	GGATG	2 cut(s)	202, 527
BtsIMutI	CAGTG	1 cut(s)	358
CfoI	GCGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	208, 324
CviJI	RGCY	7 cut(s)	81, 268, 299, 373, 402, 499, 526
CviKI_1	RGCY	7 cut(s)	81, 268, 299, 373, 402, 499, 526
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	4 cut(s)	32, 151, 246, 445
DpnII	GATC	4 cut(s)	30, 149, 244, 443
Eam1104I	CTCTTC	2 cut(s)	181, 482
EarI	CTCTTC	2 cut(s)	181, 482
Eco147I	AGGCCT	1 cut(s)	499
Eco31I	GGTCTC	1 cut(s)	256
Eco91I	GGTNACC	1 cut(s)	469
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	2 cut(s)	211, 327
FaiI	YATR	8 cut(s)	134, 192, 194, 209, 227, 325, 370, 503
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	207, 323
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	116, 374, 403
FokI	GGATG	2 cut(s)	209, 514
Fsp4HI	GCNGC	3 cut(s)	116, 374, 403
FspBI	CTAG	2 cut(s)	390, 547
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	3 cut(s)	116, 374, 403
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	81, 499
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	211, 327
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	19, 341
Hpy166II	GTNNAC	2 cut(s)	213, 387
Hpy188I	TCNGA	3 cut(s)	24, 154, 523
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	213, 387
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	200, 287, 387
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	211, 327
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	30, 149, 244, 443
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	9 cut(s)	21, 41, 95, 160, 233, 346, 363, 390, 451
Lsp1109I	GCAGC	3 cut(s)	127, 360, 389
LweI	GCATC	2 cut(s)	187, 341
MaeI	CTAG	2 cut(s)	390, 547
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	4 cut(s)	32, 151, 246, 445
MboI	GATC	4 cut(s)	30, 149, 244, 443
MboII	GAAGA	3 cut(s)	53, 168, 469
MflI	RGATCY	2 cut(s)	244, 443
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	4 cut(s)	54, 155, 453, 517
MlyI	GAGTC	2 cut(s)	13, 335
MnlI	CCTC	4 cut(s)	184, 265, 485, 489
Mph1103I	ATGCAT	1 cut(s)	202
MseI	TTAA	2 cut(s)	452, 456
MspA1I	CMGCKG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
NdeII	GATC	4 cut(s)	30, 149, 244, 443
NlaIII	CATG	2 cut(s)	211, 327
NlaIV	GGNNCC	2 cut(s)	26, 278
NsiI	ATGCAT	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	97
PacI	TTAATTAA	1 cut(s)	456
PceI	AGGCCT	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	117, 375, 404
PleI	GAGTC	2 cut(s)	13, 335
PpsI	GAGTC	2 cut(s)	13, 335
Ppu21I	YACGTR	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	376
PspEI	GGTNACC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	26, 278
PsuI	RGATCY	2 cut(s)	244, 443
PvuII	CAGCTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	452, 456
SatI	GCNGC	3 cut(s)	116, 374, 403
Sau3AI	GATC	4 cut(s)	30, 149, 244, 443
SchI	GAGTC	2 cut(s)	13, 335
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	4 cut(s)	218, 301, 404, 536
SfaNI	GCATC	2 cut(s)	187, 341
SfcI	CTRYAG	1 cut(s)	535
SfuI	TTCGAA	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	4 cut(s)	54, 155, 453, 517
SseBI	AGGCCT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	390, 547
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	376
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	97, 164, 349
TasI	AATT	4 cut(s)	54, 155, 453, 517
Tru1I	TTAA	2 cut(s)	452, 456
Tru9I	TTAA	2 cut(s)	452, 456
TscAI	CASTG	1 cut(s)	365
TseI	GCWGC	3 cut(s)	115, 373, 402
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	365
VneI	GTGCAC	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	2 cut(s)	390, 547
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.