Rw2G031450

Protein of unknown function (DUF642)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
51562700 .. 51565294
2595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031450.1

Sequence Viewer

Length: 1161 bp
ATGTACAAACTCACTGCGCTATTGGTGCTACTATGCGCTGGTTGCCACACAAGTTTATCTGCTCCTACTGATGAGAAATTGTGCATGAGGTTAATTGTTAGCCCGATCAATTTCAGGTCTATTACCGAATGGAACTTCGAGTATGGCCCTAAACCGTCACAAATGAAAGGCACGGTAGTAACAGCCCACAATGCCATTCCCAACTGGGAAACCTCAGGCCATATTGAATATATAAAATCCGGCCACAAGCAAGGCGACATTTTGCTGGTGGTTCCCGAGGGTGGCTTCGCCATCAGGCTTGGAAACGACGCCTCGATCAAGCAGAAGATCAAGGTGACCAATGGCGGCTTCTACTCCATAACGTTCAGTGCGGCCCATACGTGTGCACAAGAGGAGAAGGTGAACATTTCAGTAAATCCCAACATTGAGAAACAAGACTTTGGCATAATTCCGGTTCAGACCACGTACAGCAACACTGGGTGGGATACATATTCTTGGGGCTTTAACGCTTTTGCTGATGAGATTGAGGTAACCATCCATAACCCGGGGGTGGAGGAGGATCCGGCTTGTGGCCCGCTAATCGATTCGGTTGCTTTGAAGGCCATGGAGATTCCTCAACGTACTAGAGCCAACTTGTTGAAGAATGGCAACTTTGAAGAAGGACCTTATTTGTTTCCCAACACATCATGGGGTGTCCTCATCCCACCCCACATCGAAGATGACCACAGTCCACTACCAGGCTGGATCATCGAATCCCTCAAGGCCGTTAAATACATCGACTCCAATCACTACACCGTCCCCGAAGGTCGAAGGGCCATCGAGCTTGTCGGTGGAAAAGAGAGCGAATTGACCCAAGTGGTCTTCACCAAGCCCGGCAGGCGCTACGCCCTCACATTCTTTGTTGGCGACAGCAACAACGGCTGCCAAGGCTCCCTCGTTGTCGAGGCATTTGCCGGCAAGGACACGGTGAAGGTTCCTTACGAGTCCAAAGGCGAAGGAGGGTTCAAGAAGGCCAGGCTCCTCTTCACCGCCGTGTCGCCGCGCACACGTATCATGTTTCTGAGCACTTTCTATACCATGTCGAGCGATCACTCCGGCTGTCTGTGTGGTCCGGTGATCGATGATATCAGGTTGCTCAGCATTCGCGGACGACGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

42.55

Weight (kDa)

6.38

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF642 PF04862 43 - 200 2.7e-63 Protein of unknown function (DUF642)
DUF642 PF04862 211 - 377 9.8e-16 Protein of unknown function (DUF642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1042, 1146
AciI CCGC 6 cut(s) 345, 371, 575, 1029, 1040, 1146
AclI AACGTT 1 cut(s) 362
AclWI GGATC 3 cut(s) 554, 567, 752
AcoI YGGCCR 1 cut(s) 241
AcyI GRCGYC 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 480
AfaI GTAC 3 cut(s) 5, 467, 622
AfiI CCNNNNNNNGG 5 cut(s) 281, 544, 550, 569, 737
AflIII ACRYGT 3 cut(s) 380, 1046, 1153
AgsI TTSAA 5 cut(s) 227, 598, 640, 656, 1006
AjiI CACGTC 1 cut(s) 1154
AjnI CCWGG 2 cut(s) 736, 1013
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AleI CACNNNNGTG 1 cut(s) 1031
AluBI AGCT 1 cut(s) 823
AluI AGCT 1 cut(s) 823
Alw21I GWGCWC 2 cut(s) 388, 1067
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 3 cut(s) 554, 567, 752
Ama87I CYCGRG 2 cut(s) 275, 544
AoxI GGCC 9 cut(s) 145, 217, 241, 372, 571, 600, 762, 813, 1011
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 921
ArsI GACNNNNNNTTYG 1 cut(s) 1140
AspLEI GCGC 4 cut(s) 19, 38, 882, 1044
AspS9I GGNCC 6 cut(s) 146, 373, 572, 662, 813, 1109
AsuC2I CCSGG 3 cut(s) 545, 546, 873
AsuHPI GGTGA 6 cut(s) 346, 412, 856, 979, 1018, 1126
AvaI CYCGRG 2 cut(s) 275, 544
AvaII GGWCC 2 cut(s) 662, 1109
AxyI CCTNAGG 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 388
BamHI GGATCC 1 cut(s) 559
BarI GAAGNNNNNNTAC 2 cut(s) 962, 994
BbsI GAAGAC 1 cut(s) 853
Bbv12I GWGCWC 2 cut(s) 388, 1067
BbvI GCAGC 1 cut(s) 908
BccI CCATC 3 cut(s) 299, 542, 824
BceAI ACGGC 3 cut(s) 749, 934, 1016
BcgI CGANNNNNNTGC 4 cut(s) 572, 606, 932, 966
BciT130I CCWGG 2 cut(s) 738, 1015
BciVI GTATCC 1 cut(s) 478
BcnI CCSGG 3 cut(s) 545, 546, 873
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 883
BfuI GTATCC 1 cut(s) 478
BglI GCCNNNNNGGC 1 cut(s) 877
BisI GCNGC 4 cut(s) 346, 372, 922, 1040
BlpI GCTNAGC 1 cut(s) 1136
BlsI GCNGC 4 cut(s) 347, 373, 923, 1041
Bme1390I CCNGG 5 cut(s) 545, 546, 738, 873, 1015
Bme18I GGWCC 2 cut(s) 662, 1109
BmeT110I CYCGRG 2 cut(s) 275, 544
BmgBI CACGTC 1 cut(s) 1154
BmgT120I GGNCC 6 cut(s) 146, 373, 572, 662, 813, 1109
BmiI GGNNCC 5 cut(s) 273, 561, 931, 975, 1019
BmrFI CCNGG 5 cut(s) 545, 546, 738, 873, 1015
BmrI ACTGGG 2 cut(s) 214, 486
BmuI ACTGGG 2 cut(s) 214, 486
BoxI GACNNNNGTC 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 853
Bpu1102I GCTNAGC 1 cut(s) 1136
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 3 cut(s) 545, 546, 873
Bsa29I ATCGAT 2 cut(s) 582, 1119
BsaAI YACGTR 3 cut(s) 381, 465, 1049
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 5 cut(s) 276, 544, 545, 603, 925
BsaWI WCCGGW 2 cut(s) 451, 1111
BsaXI ACNNNNNCTCC 2 cut(s) 764, 794
Bsc4I CCNNNNNNNGG 5 cut(s) 281, 544, 550, 569, 737
Bse118I RCCGGY 1 cut(s) 953
Bse1I ACTGG 2 cut(s) 209, 481
Bse21I CCTNAGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 738, 1015
BseCI ATCGAT 2 cut(s) 582, 1119
BseDI CCNNGG 5 cut(s) 276, 544, 545, 603, 925
BseGI GGATG 2 cut(s) 534, 699
BseLI CCNNNNNNNGG 5 cut(s) 281, 544, 550, 569, 737
BseMII CTCAG 3 cut(s) 228, 1052, 1150
BseNI ACTGG 2 cut(s) 209, 481
BseRI GAGGAG 3 cut(s) 407, 569, 1010
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 1 cut(s) 908
Bsh1236I CGCG 2 cut(s) 1042, 1146
BshFI GGCC 9 cut(s) 147, 219, 243, 374, 573, 602, 764, 815, 1013
BshVI ATCGAT 2 cut(s) 582, 1119
BsiHKAI GWGCWC 2 cut(s) 388, 1067
BsiHKCI CYCGRG 2 cut(s) 275, 544
BsiSI CCGG 8 cut(s) 240, 452, 545, 563, 873, 954, 1095, 1112
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 5 cut(s) 281, 544, 550, 569, 737
BsmFI GGGAC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 1140
BsnI GGCC 9 cut(s) 147, 219, 243, 374, 573, 602, 764, 815, 1013
BsoBI CYCGRG 2 cut(s) 275, 544
Bsp1286I GDGCHC 2 cut(s) 388, 1067
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
Bsp1720I GCTNAGC 1 cut(s) 1136
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 6 cut(s) 345, 371, 575, 1029, 1040, 1146
BspANI GGCC 9 cut(s) 147, 219, 243, 374, 573, 602, 764, 815, 1013
BspCNI CTCAG 3 cut(s) 227, 1053, 1149
BspDI ATCGAT 2 cut(s) 582, 1119
BspFNI CGCG 2 cut(s) 1042, 1146
BspLI GGNNCC 5 cut(s) 273, 561, 931, 975, 1019
BspPI GGATC 3 cut(s) 554, 567, 752
BsrFI RCCGGY 1 cut(s) 953
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 209, 481
BssAI RCCGGY 1 cut(s) 953
BssECI CCNNGG 5 cut(s) 276, 544, 545, 603, 925
BssMI GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 603, 925
Bst2UI CCWGG 2 cut(s) 738, 1015
Bst4CI ACNGT 5 cut(s) 156, 175, 728, 796, 967
Bst6I CTCTTC 1 cut(s) 1028
BstACI GRCGYC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 3 cut(s) 381, 465, 1049
BstC8I GCNNGC 3 cut(s) 575, 878, 955
BstDEI CTNAG 3 cut(s) 214, 1061, 1136
BstDSI CCRYGG 1 cut(s) 603
BstEII GGTNACC 2 cut(s) 334, 529
BstF5I GGATG 2 cut(s) 534, 699
BstFNI CGCG 2 cut(s) 1042, 1146
BstH2I RGCGCY 1 cut(s) 883
BstHHI GCGC 4 cut(s) 19, 38, 882, 1044
BstKTI GATC 7 cut(s) 108, 318, 330, 562, 747, 1090, 1119
BstMBI GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
BstMWI GCNNNNNNNGC 7 cut(s) 25, 42, 191, 599, 877, 918, 927
BstNI CCWGG 2 cut(s) 738, 1015
BstPAI GACNNNNGTC 1 cut(s) 726
BstPI GGTNACC 2 cut(s) 334, 529
BstSCI CCNGG 5 cut(s) 543, 544, 736, 871, 1013
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 2 cut(s) 1042, 1146
BstV1I GCAGC 1 cut(s) 908
BstV2I GAAGAC 1 cut(s) 853
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu15I ATCGAT 2 cut(s) 582, 1119
Bsu36I CCTNAGG 1 cut(s) 214
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 9 cut(s) 147, 219, 243, 374, 573, 602, 764, 815, 1013
BsuTUI ATCGAT 2 cut(s) 582, 1119
BtgI CCRYGG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 1154
BtsCI GGATG 2 cut(s) 534, 699
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 373, 474
Cac8I GCNNGC 3 cut(s) 575, 878, 955
CfoI GCGC 4 cut(s) 19, 38, 882, 1044
Cfr10I RCCGGY 1 cut(s) 953
Cfr13I GGNCC 6 cut(s) 146, 373, 572, 662, 813, 1109
Cfr9I CCCGGG 1 cut(s) 544
ClaI ATCGAT 2 cut(s) 582, 1119
CseI GACGC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 4, 466, 621
CviAII CATG 5 cut(s) 85, 604, 687, 1054, 1078
CviQI GTAC 3 cut(s) 4, 466, 621
DdeI CTNAG 3 cut(s) 214, 1061, 1136
DpnI GATC 7 cut(s) 107, 317, 329, 561, 746, 1089, 1118
DpnII GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
DraIII CACNNNGTG 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 1028
EarI CTCTTC 1 cut(s) 1028
Eco130I CCWWGG 2 cut(s) 603, 925
Eco32I GATATC 1 cut(s) 1126
Eco47I GGWCC 2 cut(s) 662, 1109
Eco81I CCTNAGG 1 cut(s) 214
Eco88I CYCGRG 2 cut(s) 275, 544
Eco91I GGTNACC 2 cut(s) 334, 529
EcoO109I RGGNCCY 1 cut(s) 662
EcoO65I GGTNACC 2 cut(s) 334, 529
EcoRII CCWGG 2 cut(s) 736, 1013
EcoRV GATATC 1 cut(s) 1126
EcoT14I CCWWGG 2 cut(s) 603, 925
ErhI CCWWGG 2 cut(s) 603, 925
FaeI CATG 5 cut(s) 88, 607, 690, 1057, 1081
FaqI GGGAC 1 cut(s) 782
FatI CATG 5 cut(s) 84, 603, 686, 1053, 1077
FauI CCCGC 1 cut(s) 582
Fnu4HI GCNGC 4 cut(s) 346, 372, 922, 1040
FokI GGATG 2 cut(s) 521, 686
Fsp4HI GCNGC 4 cut(s) 346, 372, 922, 1040
FspBI CTAG 1 cut(s) 624
GlaI GCGC 4 cut(s) 18, 37, 881, 1043
GluI GCNGC 4 cut(s) 346, 372, 922, 1040
HaeII RGCGCY 1 cut(s) 883
HaeIII GGCC 9 cut(s) 147, 219, 243, 374, 573, 602, 764, 815, 1013
HapII CCGG 8 cut(s) 240, 452, 545, 563, 873, 954, 1095, 1112
HgaI GACGC 1 cut(s) 317
HhaI GCGC 4 cut(s) 19, 38, 882, 1044
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 5 cut(s) 88, 607, 690, 1057, 1081
Hin6I GCGC 4 cut(s) 17, 36, 880, 1042
HinP1I GCGC 4 cut(s) 17, 36, 880, 1042
HinfI GANTC 5 cut(s) 584, 610, 752, 779, 983
HpaII CCGG 8 cut(s) 240, 452, 545, 563, 873, 954, 1095, 1112
HphI GGTGA 6 cut(s) 346, 412, 856, 979, 1018, 1126
Hpy166II GTNNAC 3 cut(s) 386, 403, 731
Hpy188I TCNGA 2 cut(s) 459, 1062
Hpy188III TCNNGA 2 cut(s) 275, 1006
Hpy8I GTNNAC 3 cut(s) 386, 403, 731
Hpy99I CGWCG 2 cut(s) 311, 1155
HpyAV CCTTC 8 cut(s) 391, 592, 653, 797, 804, 964, 989, 1003
HpyCH4III ACNGT 5 cut(s) 156, 175, 728, 796, 967
HpyCH4IV ACGT 6 cut(s) 362, 380, 464, 619, 1048, 1153
HpyCH4V TGCA 2 cut(s) 84, 386
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 42, 191, 599, 877, 918, 927
HpyF3I CTNAG 3 cut(s) 214, 1061, 1136
HpySE526I ACGT 6 cut(s) 362, 380, 464, 619, 1048, 1153
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 5 cut(s) 88, 607, 690, 1057, 1081
HspAI GCGC 4 cut(s) 17, 36, 880, 1042
KroI GCCGGC 1 cut(s) 953
KroNI GCCGGC 1 cut(s) 955
Kzo9I GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
LmnI GCTCC 3 cut(s) 67, 935, 1023
Lsp1109I GCAGC 1 cut(s) 908
MaeI CTAG 1 cut(s) 624
MaeII ACGT 6 cut(s) 362, 380, 464, 619, 1048, 1153
MaeIII GTNAC 4 cut(s) 156, 178, 334, 529
MalI GATC 7 cut(s) 107, 317, 329, 561, 746, 1089, 1118
MboI GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
MboII GAAGA 6 cut(s) 337, 652, 668, 728, 853, 1015
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 2 cut(s) 388, 1067
MluCI AATT 5 cut(s) 77, 93, 109, 447, 845
MlyI GAGTC 2 cut(s) 773, 992
MroNI GCCGGC 1 cut(s) 953
MseI TTAA 3 cut(s) 92, 504, 768
MslI CAYNNNNRTG 2 cut(s) 381, 1031
MspI CCGG 8 cut(s) 240, 452, 545, 563, 873, 954, 1095, 1112
MspR9I CCNGG 5 cut(s) 545, 546, 738, 873, 1015
Mva1269I GAATGC 1 cut(s) 1140
MvaI CCWGG 2 cut(s) 738, 1015
MvnI CGCG 2 cut(s) 1042, 1146
MwoI GCNNNNNNNGC 7 cut(s) 25, 42, 191, 599, 877, 918, 927
NaeI GCCGGC 1 cut(s) 955
NciI CCSGG 3 cut(s) 545, 546, 873
NcoI CCATGG 1 cut(s) 603
NdeII GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
NgoMIV GCCGGC 1 cut(s) 953
NlaIII CATG 5 cut(s) 88, 607, 690, 1057, 1081
NlaIV GGNNCC 5 cut(s) 273, 561, 931, 975, 1019
NmuCI GTSAC 2 cut(s) 156, 334
OliI CACNNNNGTG 1 cut(s) 1031
PcsI WCGNNNNNNNCGW 1 cut(s) 1150
PctI GAATGC 1 cut(s) 1140
PdiI GCCGGC 1 cut(s) 955
PfeI GAWTC 3 cut(s) 584, 610, 752
PkrI GCNGC 4 cut(s) 347, 373, 923, 1041
PleI GAGTC 2 cut(s) 773, 991
PpsI GAGTC 2 cut(s) 773, 991
Ppu21I YACGTR 3 cut(s) 381, 465, 1049
PpuMI RGGWCCY 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 726
Psp1406I AACGTT 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 662
Psp6I CCWGG 2 cut(s) 736, 1013
PspEI GGTNACC 2 cut(s) 334, 529
PspGI CCWGG 2 cut(s) 736, 1013
PspN4I GGNNCC 5 cut(s) 273, 561, 931, 975, 1019
PspPI GGNCC 6 cut(s) 146, 373, 572, 662, 813, 1109
PspPPI RGGWCCY 1 cut(s) 662
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 3 cut(s) 5, 467, 622
RsaNI GTAC 3 cut(s) 4, 466, 621
RseI CAYNNNNRTG 2 cut(s) 381, 1031
SaqAI TTAA 3 cut(s) 92, 504, 768
SatI GCNGC 4 cut(s) 346, 372, 922, 1040
Sau3AI GATC 7 cut(s) 105, 315, 327, 559, 744, 1087, 1116
Sau96I GGNCC 6 cut(s) 146, 373, 572, 662, 813, 1109
SchI GAGTC 2 cut(s) 773, 992
ScrFI CCNGG 5 cut(s) 545, 546, 738, 873, 1015
SduI GDGCHC 2 cut(s) 388, 1067
SinI GGWCC 2 cut(s) 662, 1109
SmaI CCCGGG 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 381, 1031
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 5 cut(s) 77, 93, 109, 447, 845
SsiI CCGC 6 cut(s) 345, 371, 575, 1029, 1040, 1146
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 5 cut(s) 543, 544, 736, 871, 1013
StyI CCWWGG 2 cut(s) 603, 925
TaaI ACNGT 5 cut(s) 156, 175, 728, 796, 967
TaiI ACGT 6 cut(s) 365, 383, 467, 622, 1051, 1156
TasI AATT 5 cut(s) 77, 93, 109, 447, 845
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 348, 374, 1042
TfiI GAWTC 3 cut(s) 584, 610, 752
Tru1I TTAA 3 cut(s) 92, 504, 768
Tru9I TTAA 3 cut(s) 92, 504, 768
TscAI CASTG 3 cut(s) 19, 373, 481
TseFI GTSAC 2 cut(s) 156, 334
TseI GCWGC 1 cut(s) 921
Tsp45I GTSAC 2 cut(s) 156, 334
TspDTI ATGAA 1 cut(s) 179
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 3 cut(s) 19, 373, 481
VneI GTGCAC 1 cut(s) 384
VpaK11BI GGWCC 2 cut(s) 662, 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 738
XmaI CCCGGG 1 cut(s) 544
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.