Prupe.1G020800_v2.0.a1

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011794
Physical Location & Seq
Reverse (-)
1459798 .. 1461357
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G020800.1

Sequence Viewer

Length: 387 bp
ATGGGCGTACTGCGCCACCGCCACCGCCACCGCCGCCAGCACCACCATTACATCAGGCTATCAACTCTCATCACAGCCTTCACTTTCCTCTTGTTCACCTCAGCCTCCTCAGCCATAACCAGTCAAACCCAACTCGGTGGTGGGAATCATTCTCATCAGCAGCAGAAGCAGAGAGAGGAATATCAAATCGGGTCGTCGGCATTGGAGCGAGTTGAGACTCAGAAGAGCCGGCTGGGTTCATCGCCACCGAGTTGCAGATCCAAGTGTGGAAGGTGCTCGCCTTGTAAGGCGGTCCACGTGCCCATTCAACCAGGTGTCTCTATACCTCTCGAGTACTATCCTGAAGCTTGGCGCTGCAAGTGTGGCAACAAACTCTTCATGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

10.06

Isoelectric Point (pI)

66.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011794)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22820 AT4G14723
fragaria_vesca FvH4_4g01110
malus_domestica MD13G1199400.v1.1 MD16G1199100.v1.1
prunus_persica Prupe.1G020800_v2.0.a1
pyrus_communis pycom13g17290 pycom16g16770
rosa_chinensis RchiOBHm_Chr4g0387661
rosa_laevigata RLG00000010102
rosa_multiflora Rmu_sc0003953.1_g000012
rosa_roxburghii Rroxscaffold_5G00334330
rosa_rugosa Rorug03G0312300 Rorug03G0312400
rosa_samantha Rh4AG017600 Rh4BG012400 Rh4CG018800 Rh4DG013400
rosa_wichuraiana Rw4G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 19, 25, 31, 34, 290
AclWI GGATC 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 363
AcvI CACGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 9, 335
AgsI TTSAA 1 cut(s) 308
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 209, 322
AlwI GGATC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 160, 354
AspLEI GCGC 2 cut(s) 15, 354
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 303
BbrPI CACGTG 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 2 cut(s) 100, 109
BbvI GCAGC 2 cut(s) 172, 341
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 209, 322
BfoI RGCGCY 1 cut(s) 355
BisI GCNGC 3 cut(s) 34, 161, 355
BlsI GCNGC 3 cut(s) 35, 162, 356
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 312
Bpu10I CCTNAGC 2 cut(s) 100, 109
BsaAI YACGTR 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 312
BseMII CTCAG 3 cut(s) 114, 123, 233
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 2 cut(s) 172, 341
BseYI CCCAGC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 209, 322
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 2 cut(s) 278, 303
Bsp143I GATC 1 cut(s) 257
BspACI CCGC 5 cut(s) 19, 25, 31, 34, 290
BspCNI CTCAG 3 cut(s) 113, 122, 232
BspPI GGATC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 228
BssMI GATC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 218, 380
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 38, 230, 278
BstDEI CTNAG 3 cut(s) 100, 109, 219
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 15, 354
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 2 cut(s) 209, 322
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 5 cut(s) 12, 33, 110, 166, 363
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 172, 341
BstX2I RGATCY 1 cut(s) 257
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 38, 230, 278
CfoI GCGC 2 cut(s) 15, 354
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 8, 334
CviAII CATG 1 cut(s) 379
CviJI RGCY 7 cut(s) 58, 77, 104, 113, 228, 232, 347
CviKI_1 RGCY 7 cut(s) 58, 77, 104, 113, 228, 232, 347
CviQI GTAC 2 cut(s) 8, 334
DdeI CTNAG 3 cut(s) 100, 109, 219
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
Eam1104I CTCTTC 2 cut(s) 218, 380
EarI CTCTTC 2 cut(s) 218, 380
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 363
Eco72I CACGTG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 382
FaiI YATR 3 cut(s) 116, 323, 380
FatI CATG 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 34, 161, 355
Fsp4HI GCNGC 3 cut(s) 34, 161, 355
GlaI GCGC 2 cut(s) 14, 353
GluI GCNGC 3 cut(s) 34, 161, 355
GsaI CCCAGC 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 355
HapII CCGG 1 cut(s) 229
HhaI GCGC 2 cut(s) 15, 354
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 2 cut(s) 13, 352
HinP1I GCGC 2 cut(s) 13, 352
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 2 cut(s) 145, 217
HpaII CCGG 1 cut(s) 229
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 96, 295
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 329, 341
Hpy8I GTNNAC 2 cut(s) 96, 295
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 88, 264
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 255, 357
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 33, 110, 166, 363
HpyF3I CTNAG 3 cut(s) 100, 109, 219
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 2 cut(s) 13, 352
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 257
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 8 cut(s) 40, 50, 133, 218, 242, 297, 324, 354
Lsp1109I GCAGC 2 cut(s) 172, 341
MabI ACCWGGT 1 cut(s) 310
MaeII ACGT 1 cut(s) 297
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MboII GAAGA 2 cut(s) 235, 367
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 278, 303
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 6 cut(s) 98, 109, 115, 118, 169, 336
MroNI GCCGGC 1 cut(s) 228
MseI TTAA 1 cut(s) 385
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 5 cut(s) 12, 33, 110, 166, 363
NaeI GCCGGC 1 cut(s) 230
NdeII GATC 1 cut(s) 257
NgoMIV GCCGGC 1 cut(s) 228
NlaIII CATG 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 35, 162, 356
PleI GAGTC 1 cut(s) 211
PmaCI CACGTG 1 cut(s) 298
PmlI CACGTG 1 cut(s) 298
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 310
PspCI CACGTG 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 310
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 2 cut(s) 9, 335
RsaNI GTAC 2 cut(s) 8, 334
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 385
SatI GCNGC 3 cut(s) 34, 161, 355
Sau3AI GATC 1 cut(s) 257
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 2 cut(s) 278, 303
SetI ASST 6 cut(s) 101, 275, 300, 316, 328, 349
SexAI ACCWGGT 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 329
SinI GGWCC 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 5 cut(s) 19, 25, 31, 34, 290
StyD4I CCNGG 1 cut(s) 310
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 330
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TseI GCWGC 2 cut(s) 160, 354
TspDTI ATGAA 2 cut(s) 228, 367
VpaK11BI GGWCC 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XhoI CTCGAG 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.