Rorug03G0312300

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011794
Physical Location & Seq
Forward (+)
33433282 .. 33434318
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0312300.1

Sequence Viewer

Length: 771 bp
ATGGCGAAGGAGGCGAAGCAGTTCGCCATCCCCCCGGTGGTTTTCCCCTCCGGCGGAAACCCCAGCGCCGGATCCAACATCCAGCAACGCCGCGTCCCAACGGCGCCGTTTCAACCACCCCGATCCTCCGCCTCCAGCATCCCCTTCATGTCCTTCGACATAGGCTCAGCCGCCGCCGCTTCCACCTCCGGCAGCTTTTACGGCGGTCCCATTGGCTCCGGCTCCTCCCTCCCCGGAGGCACCGGCTTCGAAGACGAGGAGCCTCTTCTCGACGAGCTCGGTATTCACCCCGATCAAATCTGGCGGAAGACCAAGTCCATTCTCCACCCCTTCCGGGTCAACCCGGACCTCCACAAGGAGTCCGACATGTCCGGCCCGTTCCTCCTCTACGTCTCCCTCTGCCTCTTTCAATTACTCGCCGGCAAGATCCAATTCGGCGTAATACTCGGCTGGATCATCGTCTCCTTCTTCTTCCTGTACGTCGTCGTCAACATGTTGGCGGGTCGTAACGGCAACCTAGAGCTGCACAGGTGCGCCAGCGTCGTTGGCTACTCTATGTTGCCGGTGGTGATTTTATCGGCCACCATGCTCTTTGTGCCTCAAGGCGGGAGTTTCGTGTTCGCAGTGGCTGCCGTGTTTGTTTTATGGGCCACAAGGGTTTGCACCGGCCTCATGGTTGCGCTCGTCGACGGCGGTGATGAGCATCGCGGCCTCATTGCGTATGCTTGTTTCTTGATTTACACTCTCTTTTCATTTCTGGTTATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

256

Amino Acids

27.5

Weight (kDa)

6.5

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yip1 PF04893 106 - 254 2.4e-09 Yip1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011794)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22820 AT4G14723
fragaria_vesca FvH4_4g01110
malus_domestica MD13G1199400.v1.1 MD16G1199100.v1.1
prunus_persica Prupe.1G020800_v2.0.a1
pyrus_communis pycom13g17290 pycom16g16770
rosa_chinensis RchiOBHm_Chr4g0387661
rosa_laevigata RLG00000010102
rosa_multiflora Rmu_sc0003953.1_g000012
rosa_roxburghii Rroxscaffold_5G00334330
rosa_rugosa Rorug03G0312300 Rorug03G0312400
rosa_samantha Rh4AG017600 Rh4BG012400 Rh4CG018800 Rh4DG013400
rosa_wichuraiana Rw4G001140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 103, 239
AccI GTMKAC 1 cut(s) 687
AccII CGCG 2 cut(s) 93, 708
AclWI GGATC 5 cut(s) 66, 79, 117, 421, 461
AcoI YGGCCR 1 cut(s) 579
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 6 cut(s) 37, 53, 68, 334, 355, 605
AflIII ACRYGT 2 cut(s) 366, 492
AgsI TTSAA 2 cut(s) 113, 410
AluBI AGCT 3 cut(s) 195, 277, 523
AluI AGCT 3 cut(s) 195, 277, 523
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 2 cut(s) 397, 466
AlwI GGATC 5 cut(s) 66, 79, 117, 421, 461
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 5 cut(s) 373, 579, 648, 667, 709
ApeKI GCWGC 3 cut(s) 192, 523, 629
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 4 cut(s) 68, 106, 536, 682
AspS9I GGNCC 4 cut(s) 206, 346, 374, 648
AsuC2I CCSGG 4 cut(s) 35, 234, 335, 344
AsuHPI GGTGA 3 cut(s) 278, 580, 707
AsuII TTCGAA 1 cut(s) 249
AvaII GGWCC 2 cut(s) 206, 346
BamHI GGATCC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 103, 239
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 2 cut(s) 258, 314
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 204, 510, 616
BccI CCATC 1 cut(s) 35
BceAI ACGGC 6 cut(s) 91, 117, 217, 526, 617, 706
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BcnI CCSGG 4 cut(s) 35, 234, 335, 344
BcoDI GTCTC 2 cut(s) 397, 466
BfaI CTAG 1 cut(s) 518
BfoI RGCGCY 2 cut(s) 69, 107
BisI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 524, 630, 709
BlpI GCTNAGC 1 cut(s) 166
BlsI GCNGC 8 cut(s) 92, 172, 175, 178, 194, 525, 631, 710
Bme1390I CCNGG 4 cut(s) 35, 234, 335, 344
Bme18I GGWCC 2 cut(s) 206, 346
BmgT120I GGNCC 4 cut(s) 206, 346, 374, 648
BmiI GGNNCC 7 cut(s) 73, 105, 208, 217, 223, 241, 261
BmrFI CCNGG 4 cut(s) 35, 234, 335, 344
BmsI GCATC 2 cut(s) 147, 712
BpiI GAAGAC 2 cut(s) 258, 314
BpmI CTGGAG 1 cut(s) 118
Bpu1102I GCTNAGC 1 cut(s) 166
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 585
BpuMI CCSGG 4 cut(s) 35, 234, 335, 344
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 33, 232
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 53, 68, 334, 355, 605
Bse118I RCCGGY 4 cut(s) 242, 419, 562, 665
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 33, 232
BseGI GGATG 3 cut(s) 27, 78, 138
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 6 cut(s) 37, 53, 68, 334, 355, 605
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 3 cut(s) 214, 272, 374
BseXI GCAGC 3 cut(s) 204, 510, 616
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 2 cut(s) 93, 708
BshFI GGCC 5 cut(s) 375, 581, 650, 669, 711
BshNI GGYRCC 2 cut(s) 103, 239
BsiHKAI GWGCWC 1 cut(s) 279
BslFI GGGAC 2 cut(s) 80, 192
BslI CCNNNNNNNGG 6 cut(s) 37, 53, 68, 334, 355, 605
BsmAI GTCTC 2 cut(s) 397, 466
BsmBI CGTCTC 2 cut(s) 397, 466
BsmFI GGGAC 2 cut(s) 80, 192
BsnI GGCC 5 cut(s) 375, 581, 650, 669, 711
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 5 cut(s) 71, 122, 292, 426, 453
Bsp1720I GCTNAGC 1 cut(s) 166
BspANI GGCC 5 cut(s) 375, 581, 650, 669, 711
BspCNI CTCAG 1 cut(s) 179
BspFNI CGCG 2 cut(s) 93, 708
BspLI GGNNCC 7 cut(s) 73, 105, 208, 217, 223, 241, 261
BspPI GGATC 5 cut(s) 66, 79, 117, 421, 461
BspT104I TTCGAA 1 cut(s) 249
BspT107I GGYRCC 2 cut(s) 103, 239
BsrDI GCAATG 1 cut(s) 714
BsrFI RCCGGY 4 cut(s) 242, 419, 562, 665
BssAI RCCGGY 4 cut(s) 242, 419, 562, 665
BssECI CCNNGG 2 cut(s) 33, 232
BssMI GATC 5 cut(s) 71, 122, 292, 426, 453
BssNI GRCGYC 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 421, 538
BstDEI CTNAG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 27, 78, 138
BstFNI CGCG 2 cut(s) 93, 708
BstH2I RGCGCY 2 cut(s) 69, 107
BstHHI GCGC 4 cut(s) 68, 106, 536, 682
BstKTI GATC 5 cut(s) 74, 125, 295, 429, 456
BstMAI GTCTC 2 cut(s) 397, 466
BstMBI GATC 5 cut(s) 71, 122, 292, 426, 453
BstMWI GCNNNNNNNGC 6 cut(s) 11, 176, 201, 546, 595, 629
BstNSI RCATGY 2 cut(s) 370, 496
BstSCI CCNGG 4 cut(s) 33, 232, 333, 342
BstUI CGCG 2 cut(s) 93, 708
BstV1I GCAGC 3 cut(s) 204, 510, 616
BstV2I GAAGAC 2 cut(s) 258, 314
BstX2I RGATCY 2 cut(s) 71, 426
BstYI RGATCY 2 cut(s) 71, 426
BsuRI GGCC 5 cut(s) 375, 581, 650, 669, 711
BtgZI GCGATG 1 cut(s) 689
BtsCI GGATG 3 cut(s) 27, 78, 138
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 421, 538
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 4 cut(s) 68, 106, 536, 682
Cfr10I RCCGGY 4 cut(s) 242, 419, 562, 665
Cfr13I GGNCC 4 cut(s) 206, 346, 374, 648
CseI GACGC 2 cut(s) 82, 529
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 148, 367, 493, 586, 673
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 1 cut(s) 166
DinI GGCGCC 1 cut(s) 105
DpnI GATC 5 cut(s) 73, 124, 294, 428, 455
DpnII GATC 5 cut(s) 71, 122, 292, 426, 453
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 3 cut(s) 69, 118, 319
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 206, 346
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 279
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
Esp3I CGTCTC 2 cut(s) 397, 466
FaeI CATG 5 cut(s) 151, 370, 496, 589, 676
FaqI GGGAC 2 cut(s) 80, 192
FatI CATG 5 cut(s) 147, 366, 492, 585, 672
FauI CCCGC 2 cut(s) 493, 599
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 524, 630, 709
FokI GGATG 3 cut(s) 14, 65, 125
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 524, 630, 709
FspBI CTAG 1 cut(s) 518
GlaI GCGC 4 cut(s) 67, 105, 535, 681
GluI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 524, 630, 709
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 118
HaeII RGCGCY 2 cut(s) 69, 107
HaeIII GGCC 5 cut(s) 375, 581, 650, 669, 711
HgaI GACGC 2 cut(s) 82, 529
HhaI GCGC 4 cut(s) 68, 106, 536, 682
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 5 cut(s) 151, 370, 496, 589, 676
Hin6I GCGC 4 cut(s) 66, 104, 534, 680
HinP1I GCGC 4 cut(s) 66, 104, 534, 680
HincII GTYRAC 3 cut(s) 340, 490, 688
HindII GTYRAC 3 cut(s) 340, 490, 688
HinfI GANTC 1 cut(s) 359
HphI GGTGA 3 cut(s) 278, 580, 707
Hpy166II GTNNAC 3 cut(s) 340, 490, 688
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 2 cut(s) 269, 733
Hpy8I GTNNAC 3 cut(s) 340, 490, 688
Hpy99I CGWCG 6 cut(s) 275, 485, 488, 545, 689, 692
HpyAV CCTTC 4 cut(s) 154, 163, 340, 475
HpyCH4IV ACGT 2 cut(s) 390, 480
HpyCH4V TGCA 2 cut(s) 526, 663
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 176, 201, 546, 595, 629
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 390, 480
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 5 cut(s) 151, 370, 496, 589, 676
HspAI GCGC 4 cut(s) 66, 104, 534, 680
KasI GGCGCC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Kzo9I GATC 5 cut(s) 71, 122, 292, 426, 453
LmnI GCTCC 3 cut(s) 221, 227, 259
Lsp1109I GCAGC 3 cut(s) 204, 510, 616
LweI GCATC 2 cut(s) 147, 712
MaeI CTAG 1 cut(s) 518
MaeII ACGT 2 cut(s) 390, 480
MaeIII GTNAC 1 cut(s) 506
MalI GATC 5 cut(s) 73, 124, 294, 428, 455
MboI GATC 5 cut(s) 71, 122, 292, 426, 453
MboII GAAGA 5 cut(s) 257, 263, 319, 460, 463
MflI RGATCY 2 cut(s) 71, 426
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 2 cut(s) 410, 431
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 99, 387
MroNI GCCGGC 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 20
MspR9I CCNGG 4 cut(s) 35, 234, 335, 344
MvnI CGCG 2 cut(s) 93, 708
MwoI GCNNNNNNNGC 6 cut(s) 11, 176, 201, 546, 595, 629
NaeI GCCGGC 1 cut(s) 421
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 4 cut(s) 35, 234, 335, 344
NdeII GATC 5 cut(s) 71, 122, 292, 426, 453
NgoMIV GCCGGC 1 cut(s) 419
NlaIII CATG 5 cut(s) 151, 370, 496, 589, 676
NlaIV GGNNCC 7 cut(s) 73, 105, 208, 217, 223, 241, 261
NmeAIII GCCGAG 1 cut(s) 426
NspI RCATGY 2 cut(s) 370, 496
NspV TTCGAA 1 cut(s) 249
PciI ACATGT 2 cut(s) 366, 492
PdiI GCCGGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 8 cut(s) 92, 172, 175, 178, 194, 525, 631, 710
PleI GAGTC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 2 cut(s) 366, 492
Psp124BI GAGCTC 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 7 cut(s) 73, 105, 208, 217, 223, 241, 261
PspPI GGNCC 4 cut(s) 206, 346, 374, 648
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 2 cut(s) 71, 426
PsyI GACNNNGTC 1 cut(s) 313
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SacI GAGCTC 1 cut(s) 279
SalI GTCGAC 1 cut(s) 686
SatI GCNGC 8 cut(s) 91, 171, 174, 177, 193, 524, 630, 709
Sau3AI GATC 5 cut(s) 71, 122, 292, 426, 453
Sau96I GGNCC 4 cut(s) 206, 346, 374, 648
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 4 cut(s) 35, 234, 335, 344
SduI GDGCHC 1 cut(s) 279
SetI ASST 9 cut(s) 188, 197, 279, 351, 393, 483, 519, 525, 533
SfaNI GCATC 2 cut(s) 147, 712
SfoI GGCGCC 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 249
SgrDI CGTCGACG 1 cut(s) 686
SinI GGWCC 2 cut(s) 206, 346
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
Sse9I AATT 2 cut(s) 410, 431
SspDI GGCGCC 1 cut(s) 103
SspMI CTAG 1 cut(s) 518
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 4 cut(s) 33, 232, 333, 342
TaiI ACGT 2 cut(s) 393, 483
TaqI TCGA 4 cut(s) 156, 249, 270, 687
TasI AATT 2 cut(s) 410, 431
TauI GCSGC 5 cut(s) 93, 173, 176, 179, 711
TscAI CASTG 1 cut(s) 630
TseI GCWGC 3 cut(s) 192, 523, 629
TspDTI ATGAA 2 cut(s) 136, 741
TspRI CASTG 1 cut(s) 630
Tth111I GACNNNGTC 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 206, 346
XagI CCTNNNNNAGG 1 cut(s) 353
XceI RCATGY 2 cut(s) 370, 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.