Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006767

Physical Location & Seq

Genomic Coordinates Reverse (-)

6338419 .. 6344624

Gene Structure 6206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G085300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCCAGCCACTGACGCAGACTTCGATCTCAGACCGTCTCCTCAGTCCGCCTTCGCAATCGGAGAGTACGCATTTGCCGATGTCGGGAATTTAGAGCATTGTATTAAGTATTTGAATCAGACCCTTGTTACCTTTGGATTCCCGGCTTCACTTGATCTCTTTGCAAATGATCCGGTTTCTGTTGCTCGGACTTGCAATTGTATGTATTCGTTAATTCAGCAGAGACAACGTGATGTCGAATTTCGAGAGTCTGCTAACGAACAGAGACAGCGGCTATTGTCAGACATATCAAGATTAGAAGCTAAAGTTGAGAGGCTTGAGGGGCAGTTACAAGCCAAAGATAGGGAGATAGCAACAATAACACGAACGGAAGCTAAAGCTACAGCAGCTTTTAAGTCCCAAATTGACAAACTACAGCAGGAGCGCGATGAGTTTCAGAGGATGGTCATCGGCAATCAGCAAGTTAGGACTCAACAAATGCATGAGATGAAGAAAAAAGAAAAGGAGTACATAAAGTTGCAGGAGAGGCTAAACCAAGTGTTGATGGAGAAAAAGAAGGAATCTAGATCAGGCATGGAGATAATGAATTTACTTCAGAAAGAAGGGCGGCAGCGTGGAACATGGAACGGAAAGAAGGCTGATAATGAATTTTATAAAAAGATTGTGGATACTTATGAGGCAAAAAATCAAGAATTGATTGCAGAGAATGCTGATTTAAAGGCATTATTGCGATCAATGCAGGTGGATATGCGTGATTTCATAAATGCTCCAAATGGGCAATCCAAGCAGTCTCTGGCTGCCAATGAACGAGTTGAAACTGACCACACACAGTCTCCATTGGGTGGGAGGACGGATGTCTTTGATCTGCCTTTTCACATGGCGAGAGATCAAATAGAAGAAAGTCTCCGAAATAAGATGGCTTCCATAAAGGAGCGCATGGTTCAATTGCAAGATGCACAAAAAGAAGCAGAGGTTACATCTGAAGTAACTGAGAGGGAGCTTGAGCTTGAAGCCCAACTGGTTGAGGCGAGGAGCATAATCCAAGAGCAGGCATCCATAATGTCTAAACAATTGGCCAAGTCTGAGAGACCGAGGGAGTCTATCATTTCGTCCCCCGCTGAGATAATGGCATGCCTCGAATATCAAGTCTACTTTGGAAATCCTAGGAGTGTGTGTGGGTTTGAAAATGGTCATTTAGGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04520 map04520

Pfam Domains

Protein Families

ADIP

Protein Analysis

402

Amino Acids

45.97

Weight (kDa)

5.59

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18876 AT2G18876 AT5G57410 AT5G57410 AT5G57410
fragaria_vesca	FvH4_4g08170 FvH4_4g08170 FvH4_4g08170 FvH4_4g08170 FvH4_4g08170
malus_domestica	MD13G1253000.v1.1 MD16G1257500.v1.1
prunus_persica	Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402371
rosa_laevigata	RLG00000009099
rosa_multiflora	Rmu_sc0002324.1_g000010
rosa_roxburghii	Rroxscaffold_5G00347030
rosa_rugosa	Rorug04G0034300
rosa_samantha	Rh4AG112300 Rh4BG104900 Rh4CG119100 Rh4DG103800
rosa_wichuraiana	Rw4G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AarI	CACCTGC	1 cut(s)	730
Acc36I	ACCTGC	1 cut(s)	730
AccB7I	CCANNNNNTGG	1 cut(s)	842
AccI	GTMKAC	1 cut(s)	1149
AccII	CGCG	1 cut(s)	426
AciI	CCGC	4 cut(s)	48, 271, 607, 1116
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	1074
AcsI	RAATTY	4 cut(s)	88, 239, 586, 647
AcuI	CTGAAG	2 cut(s)	578, 1002
AfaI	GTAC	2 cut(s)	68, 509
AfiI	CCNNNNNNNGG	4 cut(s)	84, 342, 842, 1048
AgsI	TTSAA	5 cut(s)	115, 815, 944, 1010, 1184
AluBI	AGCT	6 cut(s)	302, 374, 380, 389, 1000, 1006
AluI	AGCT	6 cut(s)	302, 374, 380, 389, 1000, 1006
Alw26I	GTCTC	7 cut(s)	42, 217, 259, 795, 837, 908, 1081
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	2 cut(s)	11, 793
AoxI	GGCC	1 cut(s)	1074
ApeKI	GCWGC	3 cut(s)	386, 610, 797
ApoI	RAATTY	4 cut(s)	88, 239, 586, 647
ArsI	GACNNNNNNTTYG	3 cut(s)	37, 1131, 1163
AspA2I	CCTAGG	1 cut(s)	1163
AspLEI	GCGC	2 cut(s)	426, 936
AsuC2I	CCSGG	1 cut(s)	143
AvrII	CCTAGG	1 cut(s)	1163
BalI	TGGCCA	1 cut(s)	1076
BbvI	GCAGC	3 cut(s)	398, 622, 784
BccI	CCATC	3 cut(s)	436, 538, 910
BciVI	GTATCC	1 cut(s)	661
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	7 cut(s)	42, 217, 259, 795, 837, 908, 1081
BfaI	CTAG	3 cut(s)	564, 1164, 1204
BfmI	CTRYAG	2 cut(s)	381, 413
BfuAI	ACCTGC	1 cut(s)	730
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	5 cut(s)	272, 387, 608, 611, 798
BlnI	CCTAGG	1 cut(s)	1163
BlsI	GCNGC	5 cut(s)	273, 388, 609, 612, 799
Bme1390I	CCNGG	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	1201
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	943, 1061
BoxI	GACNNNNGTC	1 cut(s)	854
BpuEI	CTTGAG	2 cut(s)	338, 1022
BpuMI	CCSGG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	1081
BsaJI	CCNNGG	2 cut(s)	1091, 1163
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	817, 847, 1159, 1189
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 342, 842, 1048
Bse1I	ACTGG	1 cut(s)	1023
Bse8I	GATNNNNATC	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	1091, 1163
BseGI	GGATG	3 cut(s)	447, 859, 1052
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	84, 342, 842, 1048
BseMII	CTCAG	5 cut(s)	43, 56, 981, 1074, 1110
BseNI	ACTGG	1 cut(s)	1023
BseRI	GAGGAG	2 cut(s)	30, 1045
BseXI	GCAGC	3 cut(s)	398, 622, 784
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	1076
BsiSI	CCGG	2 cut(s)	143, 173
BslFI	GGGAC	2 cut(s)	382, 1096
BslI	CCNNNNNNNGG	4 cut(s)	84, 342, 842, 1048
BsmAI	GTCTC	7 cut(s)	42, 217, 259, 795, 837, 908, 1081
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	2 cut(s)	382, 1096
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	1076
Bso31I	GGTCTC	1 cut(s)	1081
Bsp143I	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
BspACI	CCGC	4 cut(s)	48, 271, 607, 1116
BspANI	GGCC	1 cut(s)	1076
BspCNI	CTCAG	5 cut(s)	42, 55, 982, 1075, 1111
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	1201
BspMI	ACCTGC	1 cut(s)	730
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	1081
BsrI	ACTGG	1 cut(s)	1023
BssECI	CCNNGG	2 cut(s)	1091, 1163
BssMI	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
BssT1I	CCWWGG	1 cut(s)	1163
Bst4CI	ACNGT	2 cut(s)	36, 831
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstC8I	GCNNGC	3 cut(s)	6, 1050, 1132
BstDEI	CTNAG	5 cut(s)	29, 42, 990, 1083, 1119
BstF5I	GGATG	3 cut(s)	447, 859, 1052
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	2 cut(s)	426, 936
BstKTI	GATC	7 cut(s)	28, 157, 172, 569, 734, 865, 889
BstMAI	GTCTC	7 cut(s)	42, 217, 259, 795, 837, 908, 1081
BstMBI	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 322, 386, 526, 707, 736, 784
BstNSI	RCATGY	1 cut(s)	1134
BstPAI	GACNNNNGTC	1 cut(s)	854
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	2 cut(s)	381, 413
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	398, 622, 784
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	1076
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	447, 859, 1052
BtsIMutI	CAGTG	1 cut(s)	9
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	3 cut(s)	6, 1050, 1132
CaiI	CAGNNNCTG	2 cut(s)	11, 793
CfoI	GCGC	2 cut(s)	426, 936
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	67, 508
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	6 cut(s)	482, 574, 621, 877, 937, 1131
CviQI	GTAC	2 cut(s)	67, 508
DdeI	CTNAG	5 cut(s)	29, 42, 990, 1083, 1119
DpnI	GATC	7 cut(s)	27, 156, 171, 568, 733, 864, 888
DpnII	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
DraI	TTTAAA	1 cut(s)	717
EaeI	YGGCCR	1 cut(s)	1074
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	1163
Eco31I	GGTCTC	1 cut(s)	1081
Eco57I	CTGAAG	2 cut(s)	578, 1002
EcoT14I	CCWWGG	1 cut(s)	1163
EcoT22I	ATGCAT	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	1163
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	6 cut(s)	485, 577, 624, 880, 940, 1134
FaqI	GGGAC	2 cut(s)	382, 1096
FatI	CATG	6 cut(s)	481, 573, 620, 876, 936, 1130
FauI	CCCGC	1 cut(s)	1123
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	5 cut(s)	272, 387, 608, 611, 798
FokI	GGATG	3 cut(s)	454, 866, 1039
Fsp4HI	GCNGC	5 cut(s)	272, 387, 608, 611, 798
FspBI	CTAG	3 cut(s)	564, 1164, 1204
GlaI	GCGC	2 cut(s)	425, 935
GluI	GCNGC	5 cut(s)	272, 387, 608, 611, 798
HaeIII	GGCC	1 cut(s)	1076
HapII	CCGG	2 cut(s)	143, 173
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	2 cut(s)	426, 936
Hin1II	CATG	6 cut(s)	485, 577, 624, 880, 940, 1134
Hin6I	GCGC	2 cut(s)	424, 934
HinP1I	GCGC	2 cut(s)	424, 934
HinfI	GANTC	6 cut(s)	115, 138, 248, 469, 560, 1097
HpaII	CCGG	2 cut(s)	143, 173
Hpy166II	GTNNAC	1 cut(s)	1150
Hpy188III	TCNNGA	5 cut(s)	85, 245, 291, 564, 689
Hpy8I	GTNNAC	1 cut(s)	1150
HpyAV	CCTTC	4 cut(s)	61, 550, 596, 628
HpyCH4III	ACNGT	2 cut(s)	36, 831
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	8 cut(s)	164, 195, 481, 520, 701, 739, 949, 956
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 322, 386, 526, 707, 736, 784
HpyF3I	CTNAG	5 cut(s)	29, 42, 990, 1083, 1119
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	6 cut(s)	485, 577, 624, 880, 940, 1134
HspAI	GCGC	2 cut(s)	424, 934
Kzo9I	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
LmnI	GCTCC	5 cut(s)	421, 772, 931, 997, 1032
Lsp1109I	GCAGC	3 cut(s)	398, 622, 784
LweI	GCATC	2 cut(s)	943, 1061
MaeI	CTAG	3 cut(s)	564, 1164, 1204
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	4 cut(s)	127, 327, 973, 985
MalI	GATC	7 cut(s)	27, 156, 171, 568, 733, 864, 888
MboI	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
MboII	GAAGA	2 cut(s)	502, 908
MfeI	CAATTG	3 cut(s)	196, 944, 1070
MlsI	TGGCCA	1 cut(s)	1076
MluNI	TGGCCA	1 cut(s)	1076
MlyI	GAGTC	3 cut(s)	257, 463, 1106
Mox20I	TGGCCA	1 cut(s)	1076
Mph1103I	ATGCAT	1 cut(s)	483
MscI	TGGCCA	1 cut(s)	1076
MseI	TTAA	4 cut(s)	105, 212, 393, 716
Msp20I	TGGCCA	1 cut(s)	1076
MspA1I	CMGCKG	2 cut(s)	271, 1118
MspI	CCGG	2 cut(s)	143, 173
MspR9I	CCNGG	1 cut(s)	143
MunI	CAATTG	3 cut(s)	196, 944, 1070
Mva1269I	GAATGC	1 cut(s)	712
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	7 cut(s)	14, 322, 386, 526, 707, 736, 784
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
NlaIII	CATG	6 cut(s)	485, 577, 624, 880, 940, 1134
NlaIV	GGNNCC	1 cut(s)	1201
NsiI	ATGCAT	1 cut(s)	483
NspI	RCATGY	1 cut(s)	1134
PaeI	GCATGC	1 cut(s)	1134
PaqCI	CACCTGC	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 75
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	3 cut(s)	115, 138, 560
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	5 cut(s)	273, 388, 609, 612, 799
PleI	GAGTC	3 cut(s)	256, 463, 1105
PpsI	GAGTC	3 cut(s)	256, 463, 1105
PshAI	GACNNNNGTC	1 cut(s)	854
PsiI	TTATAA	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	1201
PstNI	CAGNNNCTG	2 cut(s)	11, 793
RsaI	GTAC	2 cut(s)	68, 509
RsaNI	GTAC	2 cut(s)	67, 508
SaqAI	TTAA	4 cut(s)	105, 212, 393, 716
SatI	GCNGC	5 cut(s)	272, 387, 608, 611, 798
Sau3AI	GATC	7 cut(s)	25, 154, 169, 566, 731, 862, 886
SchI	GAGTC	3 cut(s)	257, 463, 1106
ScrFI	CCNGG	1 cut(s)	143
SfaNI	GCATC	2 cut(s)	943, 1061
SfcI	CTRYAG	2 cut(s)	381, 413
SmlI	CTYRAG	2 cut(s)	317, 1001
SmoI	CTYRAG	2 cut(s)	317, 1001
SphI	GCATGC	1 cut(s)	1134
SsiI	CCGC	4 cut(s)	48, 271, 607, 1116
SspMI	CTAG	3 cut(s)	564, 1164, 1204
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	1163
TaaI	ACNGT	2 cut(s)	36, 831
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	4 cut(s)	24, 237, 244, 1137
TaqII	GACCGA	1 cut(s)	1105
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	2 cut(s)	274, 610
TfiI	GAWTC	3 cut(s)	115, 138, 560
Tru1I	TTAA	4 cut(s)	105, 212, 393, 716
Tru9I	TTAA	4 cut(s)	105, 212, 393, 716
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	3 cut(s)	386, 610, 797
TspDTI	ATGAA	5 cut(s)	503, 599, 660, 748, 819
TspGWI	ACGGA	3 cut(s)	383, 642, 866
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	842
XapI	RAATTY	4 cut(s)	88, 239, 586, 647
XbaI	TCTAGA	1 cut(s)	563
XceI	RCATGY	1 cut(s)	1134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmaJI	CCTAGG	1 cut(s)	1163
XmiI	GTMKAC	1 cut(s)	1149
XspI	CTAG	3 cut(s)	564, 1164, 1204
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.