Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002324.1

Orthogroup ID

OG0006767

Physical Location & Seq

Genomic Coordinates Forward (+)

35441 .. 41770

Gene Structure 6330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002324.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

atgtattctttgattcagcagagacaacgcgatgtagaatttcgagagtctgctaacgaacagagacagcggctattgtcagacatatcaaggttagaagctaaagttgagcggcttgaggggcatattcaagccaaagatagggaaatagcaacaatgacacgaacggaagctaaagctacagcggcttttaagtctcaaattgagaagctgcagaaagagcgagatgagtttcagagaatggtcattgggaatcagcaagttaagactcaacaaatgcatgagatgaagaaaaaagaaaaggagtacataaagctgcaggagagactaaaccaagtgttgatggagaaaaagaaggaatctagatctggcatggagataatgaacttgcttcagtccgcgttcgcaatcggagagtacgcatttgccgatgtggggaatttggagcactgtatcaagtatttgaaccagacgctcgttactttcggattcccggcttcgcttgatctcttcgccaatgatccggtttcggtagctcggacttgcaattgtatgtattctttgattcagcagagacaacgcgatgtagaatttcgagagtctgctaacgaacagagacagcggctattgtcagacatatcaaggttagaagctaaagttgagcggcttgaggggcatattcaagccaaagatagggaaatagcaacaatgacacgaacggaagctaaagctacagcggcttttaagtctcaaattgagaagctgcagaaagagcgagatgagtttcagagaatggtcattgggaatcagcaagttaagactcaacaaatgcatgagatgaagaaaaaagaaaaggagtacataaagctgcaggagagactaaaccaagtgttgatggagaaaaagaaggaatctagatctggcatggagataatgaacttgcttcagaaagaagggaggcagcagcgtggaacatggaacggaaagaagactgataatgatttttataaaaagattgtggatgcttatgaggccaaaaatcaagacttgatggcggagaattccgatctgaaggcattattacgatcaatgcagatggatatgcgtgatttcataaatcatccaaatgggcagtctaagcagtctctagctgccaatgaacaggttgaaactgaccacacacaatctccattgggtggaagaacggatgtctttgatctgccctttcacatggccagaaatcaaatagaagaaagtctccgaaataagatggcttcgataaaggagcgtatgggtcaattgcaagatgcacaaaaagaagcggaggttacttctgaagcaactgagagggagcttgagcttgaagctcaacttgttgaggcgaggagcataatccaagagcaggcgtccataatgtccaaacaatttaccaagcctgagaggcaaaggagtctgaatggctattttaattctggcagggaatctatgatttcgtcacctgcggagggggtaagaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04520 map04520

Pfam Domains

Protein Families

ADIP

Protein Analysis

506

Amino Acids

58.98

Weight (kDa)

8.76

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18876 AT2G18876 AT5G57410 AT5G57410 AT5G57410
fragaria_vesca	FvH4_4g08170 FvH4_4g08170 FvH4_4g08170 FvH4_4g08170 FvH4_4g08170
malus_domestica	MD13G1253000.v1.1 MD16G1257500.v1.1
prunus_persica	Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402371
rosa_laevigata	RLG00000009099
rosa_multiflora	Rmu_sc0002324.1_g000010
rosa_roxburghii	Rroxscaffold_5G00347030
rosa_rugosa	Rorug04G0034300
rosa_samantha	Rh4AG112300 Rh4BG104900 Rh4CG119100 Rh4DG103800
rosa_wichuraiana	Rw4G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1008
AarI	CACCTGC	1 cut(s)	1507
Acc36I	ACCTGC	1 cut(s)	1507
AccB7I	CCANNNNNTGG	1 cut(s)	1196
AccBSI	CCGCTC	2 cut(s)	112, 664
AccII	CGCG	3 cut(s)	30, 401, 582
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	1233
AcsI	RAATTY	4 cut(s)	38, 439, 590, 1060
AcuI	CTGAAG	4 cut(s)	377, 929, 1091, 1356
AcyI	GRCGYC	1 cut(s)	1406
AfaI	GTAC	3 cut(s)	308, 419, 860
AfiI	CCNNNNNNNGG	6 cut(s)	141, 435, 693, 1196, 1402, 1505
AgsI	TTSAA	5 cut(s)	131, 466, 683, 1169, 1364
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	515
AoxI	GGCC	2 cut(s)	1032, 1233
ApeKI	GCWGC	7 cut(s)	211, 316, 763, 868, 961, 964, 1151
ApoI	RAATTY	4 cut(s)	38, 439, 590, 1060
ArsI	GACNNNNNNTTYG	2 cut(s)	1118, 1150
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	1488
BalI	TGGCCA	1 cut(s)	1235
BbsI	GAAGAC	1 cut(s)	995
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	7 cut(s)	198, 303, 750, 855, 973, 976, 1138
BccI	CCATC	5 cut(s)	337, 889, 1045, 1090, 1264
BcnI	CCSGG	1 cut(s)	494
BfaI	CTAG	3 cut(s)	363, 915, 1148
BfmI	CTRYAG	6 cut(s)	180, 212, 317, 732, 764, 869
BfuAI	ACCTGC	1 cut(s)	1507
BglI	GCCNNNNNGGC	1 cut(s)	1441
BglII	AGATCT	2 cut(s)	365, 917
Bme1390I	CCNGG	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	2 cut(s)	1012, 1297
BpiI	GAAGAC	1 cut(s)	995
BpuEI	CTTGAG	3 cut(s)	137, 689, 1376
BpuMI	CCSGG	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	1406
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	2 cut(s)	1171, 1201
Bsc4I	CCNNNNNNNGG	6 cut(s)	141, 435, 693, 1196, 1402, 1505
BseGI	GGATG	3 cut(s)	1027, 1120, 1213
BseLI	CCNNNNNNNGG	6 cut(s)	141, 435, 693, 1196, 1402, 1505
BseMII	CTCAG	2 cut(s)	1335, 1428
BseRI	GAGGAG	1 cut(s)	1399
BseXI	GCAGC	7 cut(s)	198, 303, 750, 855, 973, 976, 1138
Bsh1236I	CGCG	3 cut(s)	30, 401, 582
BshFI	GGCC	2 cut(s)	1034, 1235
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	494, 524
BslI	CCNNNNNNNGG	6 cut(s)	141, 435, 693, 1196, 1402, 1505
BsnI	GGCC	2 cut(s)	1034, 1235
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
BspANI	GGCC	2 cut(s)	1034, 1235
BspCNI	CTCAG	2 cut(s)	1336, 1429
BspFNI	CGCG	3 cut(s)	30, 401, 582
BspMAI	CTGCAG	4 cut(s)	216, 321, 768, 873
BspMI	ACCTGC	1 cut(s)	1507
BspPI	GGATC	1 cut(s)	515
BsrBI	CCGCTC	2 cut(s)	112, 664
BssMI	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
BssNI	GRCGYC	1 cut(s)	1406
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	1 cut(s)	515
BstACI	GRCGYC	1 cut(s)	1406
BstC8I	GCNNGC	1 cut(s)	1404
BstDEI	CTNAG	3 cut(s)	1137, 1344, 1437
BstF5I	GGATG	3 cut(s)	1027, 1120, 1213
BstFNI	CGCG	3 cut(s)	30, 401, 582
BstKTI	GATC	7 cut(s)	368, 508, 523, 920, 1069, 1088, 1219
BstMBI	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
BstMWI	GCNNNNNNNGC	9 cut(s)	121, 185, 220, 673, 737, 772, 1031, 1138, 1441
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	6 cut(s)	180, 212, 317, 732, 764, 869
BstUI	CGCG	3 cut(s)	30, 401, 582
BstV1I	GCAGC	7 cut(s)	198, 303, 750, 855, 973, 976, 1138
BstV2I	GAAGAC	1 cut(s)	995
BstX2I	RGATCY	2 cut(s)	365, 917
BstYI	RGATCY	2 cut(s)	365, 917
BsuRI	GGCC	2 cut(s)	1034, 1235
BtgZI	GCGATG	2 cut(s)	45, 597
BtsCI	GGATG	3 cut(s)	1027, 1120, 1213
BtsIMutI	CAGTG	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	1507
Cac8I	GCNNGC	1 cut(s)	1404
CseI	GACGC	2 cut(s)	481, 1395
Csp6I	GTAC	3 cut(s)	307, 418, 859
CviAII	CATG	6 cut(s)	281, 373, 833, 925, 975, 1231
CviQI	GTAC	3 cut(s)	307, 418, 859
DdeI	CTNAG	3 cut(s)	1137, 1344, 1437
DpnI	GATC	7 cut(s)	367, 507, 522, 919, 1068, 1087, 1218
DpnII	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
EaeI	YGGCCR	1 cut(s)	1233
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	1070
Eco57I	CTGAAG	4 cut(s)	377, 929, 1091, 1356
EcoRI	GAATTC	1 cut(s)	1060
EcoT22I	ATGCAT	2 cut(s)	282, 834
FaeI	CATG	6 cut(s)	284, 376, 836, 928, 978, 1234
FalI	AAGNNNNNCTT	2 cut(s)	1356, 1388
FatI	CATG	6 cut(s)	280, 372, 832, 924, 974, 1230
FokI	GGATG	3 cut(s)	1034, 1107, 1220
FspBI	CTAG	3 cut(s)	363, 915, 1148
HaeIII	GGCC	2 cut(s)	1034, 1235
HapII	CCGG	2 cut(s)	494, 524
HgaI	GACGC	2 cut(s)	481, 1395
Hin1I	GRCGYC	1 cut(s)	1406
Hin1II	CATG	6 cut(s)	284, 376, 836, 928, 978, 1234
HpaII	CCGG	2 cut(s)	494, 524
HphI	GGTGA	1 cut(s)	1488
Hpy188III	TCNNGA	5 cut(s)	44, 363, 596, 915, 1043
HpyAV	CCTTC	4 cut(s)	349, 901, 947, 1066
HpyCH4III	ACNGT	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	9 cut(s)	121, 185, 220, 673, 737, 772, 1031, 1138, 1441
HpyF3I	CTNAG	3 cut(s)	1137, 1344, 1437
Hsp92I	GRCGYC	1 cut(s)	1406
Hsp92II	CATG	6 cut(s)	284, 376, 836, 928, 978, 1234
Kzo9I	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
LmnI	GCTCC	4 cut(s)	445, 1285, 1351, 1386
Lsp1109I	GCAGC	7 cut(s)	198, 303, 750, 855, 973, 976, 1138
LweI	GCATC	2 cut(s)	1012, 1297
MaeI	CTAG	3 cut(s)	363, 915, 1148
MaeIII	GTNAC	3 cut(s)	478, 1327, 1494
MalI	GATC	7 cut(s)	367, 507, 522, 919, 1068, 1087, 1218
MbiI	CCGCTC	2 cut(s)	112, 664
MboI	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
MboII	GAAGA	6 cut(s)	301, 502, 853, 1000, 1212, 1262
MfeI	CAATTG	2 cut(s)	547, 1298
MflI	RGATCY	2 cut(s)	365, 917
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	1235
MluNI	TGGCCA	1 cut(s)	1235
MlyI	GAGTC	5 cut(s)	56, 262, 608, 814, 1459
Mox20I	TGGCCA	1 cut(s)	1235
Mph1103I	ATGCAT	2 cut(s)	282, 834
MscI	TGGCCA	1 cut(s)	1235
MseI	TTAA	5 cut(s)	192, 264, 744, 816, 1467
MslI	CAYNNNNRTG	1 cut(s)	1125
Msp20I	TGGCCA	1 cut(s)	1235
MspA1I	CMGCKG	4 cut(s)	70, 185, 622, 737
MspI	CCGG	2 cut(s)	494, 524
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	2 cut(s)	547, 1298
MvnI	CGCG	3 cut(s)	30, 401, 582
MwoI	GCNNNNNNNGC	9 cut(s)	121, 185, 220, 673, 737, 772, 1031, 1138, 1441
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
NlaIII	CATG	6 cut(s)	284, 376, 836, 928, 978, 1234
NmuCI	GTSAC	1 cut(s)	1494
NsiI	ATGCAT	2 cut(s)	282, 834
PaqCI	CACCTGC	1 cut(s)	1507
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PfeI	GAWTC	8 cut(s)	13, 253, 359, 489, 565, 805, 911, 1481
PflMI	CCANNNNNTGG	1 cut(s)	1196
PleI	GAGTC	5 cut(s)	55, 262, 607, 814, 1458
PpsI	GAGTC	5 cut(s)	55, 262, 607, 814, 1458
PsiI	TTATAA	1 cut(s)	1008
PstI	CTGCAG	4 cut(s)	216, 321, 768, 873
PsuI	RGATCY	2 cut(s)	365, 917
RsaI	GTAC	3 cut(s)	308, 419, 860
RsaNI	GTAC	3 cut(s)	307, 418, 859
RseI	CAYNNNNRTG	1 cut(s)	1125
SaqAI	TTAA	5 cut(s)	192, 264, 744, 816, 1467
Sau3AI	GATC	7 cut(s)	365, 505, 520, 917, 1066, 1085, 1216
SchI	GAGTC	5 cut(s)	56, 262, 608, 814, 1459
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	1012, 1297
SfcI	CTRYAG	6 cut(s)	180, 212, 317, 732, 764, 869
SmiMI	CAYNNNNRTG	1 cut(s)	1125
SmlI	CTYRAG	3 cut(s)	116, 668, 1355
SmoI	CTYRAG	3 cut(s)	116, 668, 1355
SspMI	CTAG	3 cut(s)	363, 915, 1148
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	452
TaqI	TCGA	3 cut(s)	43, 595, 1277
TatI	WGTACW	2 cut(s)	306, 858
TauI	GCSGC	6 cut(s)	73, 115, 188, 625, 667, 740
TfiI	GAWTC	8 cut(s)	13, 253, 359, 489, 565, 805, 911, 1481
Tru1I	TTAA	5 cut(s)	192, 264, 744, 816, 1467
Tru9I	TTAA	5 cut(s)	192, 264, 744, 816, 1467
TscAI	CASTG	1 cut(s)	455
TseFI	GTSAC	1 cut(s)	1494
TseI	GCWGC	7 cut(s)	211, 316, 763, 868, 961, 964, 1151
Tsp45I	GTSAC	1 cut(s)	1494
TspDTI	ATGAA	6 cut(s)	302, 398, 854, 950, 1102, 1173
TspGWI	ACGGA	4 cut(s)	182, 734, 996, 1220
TspRI	CASTG	1 cut(s)	455
Van91I	CCANNNNNTGG	1 cut(s)	1196
XapI	RAATTY	4 cut(s)	38, 439, 590, 1060
XbaI	TCTAGA	2 cut(s)	362, 914
XspI	CTAG	3 cut(s)	363, 915, 1148
Zsp2I	ATGCAT	2 cut(s)	282, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.