Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006767

Physical Location & Seq

Genomic Coordinates Forward (+)

5089802 .. 5090986

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCACAGAAATTTGAAAGGAGCTATAGGGCGTTATATGAGGTTGTGCGAGGTGTTGCCACGTATGGAGAAGACTATTATTCAGCGTATAAGGAATCGGGTTTTGGAGGATGATTTCCGTTCAGACCATTGCGAACCAGTGTATGGCACCCACTTGCGATGTTTGGAAGAGCAGATTGGTCAAATTTTCACTCATGACATCTTCCTCTTAATCAAGGATCAAATTAAGTTTGAGTCCAAGATTGTTATTGGGCCTAGAGAGGTTCATCTCCACAATAGTTCTGAGTCCATTTCATTGACCCAATATGGTAAGCCGGAGCGATGTTGGACTGTGTTCTACCAACCTGATCAGAGTAATCCCAGATTTGTATGTTCCTGCAAACTCTTTGAGTCTGATGGGATTCCATGTTGCCACATCTTTGCAGTCATGAAATGTGAGATGATTACAATGTTCCCAGAATCATTAGTAAATGAAAGATGGAAAAAAGATGCAGGTGTGAAGAGGAAATCAACCCTCTCAGGTTCAGCAAATGACCAGTCTACACGGATTGCAAGGTACGGCGAATTGATGGGACTTTGTGCTAAAATCTGCCATCTTGCTTCCTATAGTGAGGAGGGGTATGATGAGACAAGGGAAGCTCTTAGGCAGATGACCTTAAAATCTAAAAAATACAAACTTGCAATAGAGGCGGCCATTGATGTTCCTTTTGAAGGTCTCCACCCTAATGTGATCAGAGACCCCGTTGTTTGTAGGACAAAAGGCAATAAGTCTAAGGCCGGCATTCCCGGGGATGAGGAAAACTACAAGTCTAAAGTAGGCAAGGGCTGCAAAATTTGTCATATGAGTGGGCACAACTGGAGAACTTGCCACACCAGGAATAGTTCAGCAAATGAAGGAAAGCAAGCTACACAACAAACTAAAGTGAAAGGATGTAGTAAGCAAGTTGGTGGAAACAAGTCAGACAATAGTGGTTCTGAATATGAGACTAGTGATAACAACGATTGTGGAAAAGAATCTAACAACATGCCTAAAAGTGGTGCTACCAATTTGATTCATAATCTGGAAGAGGCTCGCCCACTTGAGTTTTTTACTGGTTATGAGAAAAGCAACAATTTGGAAAGGGACTCTACAAGTTCTGGACTCCCTGATTTCTTTGAACACTTTAGGCCCTTCTCTAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04520 map04520

Pfam Domains

Protein Families

ADIP

Protein Analysis

394

Amino Acids

44.7

Weight (kDa)

8.47

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18876 AT2G18876 AT5G57410 AT5G57410 AT5G57410
fragaria_vesca	FvH4_4g08170 FvH4_4g08170 FvH4_4g08170 FvH4_4g08170 FvH4_4g08170
malus_domestica	MD13G1253000.v1.1 MD16G1257500.v1.1
prunus_persica	Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1 Prupe.1G085300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402371
rosa_laevigata	RLG00000009099
rosa_multiflora	Rmu_sc0002324.1_g000010
rosa_roxburghii	Rroxscaffold_5G00347030
rosa_rugosa	Rorug04G0034300
rosa_samantha	Rh4AG112300 Rh4BG104900 Rh4CG119100 Rh4DG103800
rosa_wichuraiana	Rw4G009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	539
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	3 cut(s)	10, 183, 831
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	3 cut(s)	143, 710, 1034
AgsI	TTSAA	3 cut(s)	16, 710, 1157
AhlI	ACTAGT	1 cut(s)	986
AjnI	CCWGG	1 cut(s)	872
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 159, 191
AluBI	AGCT	3 cut(s)	23, 638, 905
AluI	AGCT	3 cut(s)	23, 638, 905
Alw26I	GTCTC	4 cut(s)	620, 719, 729, 977
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	785
AoxI	GGCC	4 cut(s)	251, 690, 774, 1166
ApeKI	GCWGC	1 cut(s)	825
ApoI	RAATTY	3 cut(s)	10, 183, 831
ArsI	GACNNNNNNTTYG	2 cut(s)	521, 553
AspS9I	GGNCC	2 cut(s)	251, 1167
AsuC2I	CCSGG	2 cut(s)	786, 787
AvaI	CYCGRG	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	852
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	812
BccI	CCATC	4 cut(s)	389, 471, 562, 600
BceAI	ACGGC	1 cut(s)	574
BciT130I	CCWGG	1 cut(s)	874
BclI	TGATCA	2 cut(s)	346, 729
BcnI	CCSGG	2 cut(s)	786, 787
BcoDI	GTCTC	4 cut(s)	620, 719, 729, 977
BcuI	ACTAGT	1 cut(s)	986
BfaI	CTAG	2 cut(s)	255, 987
BfmI	CTRYAG	2 cut(s)	24, 604
BfuAI	ACCTGC	1 cut(s)	482
BisI	GCNGC	2 cut(s)	690, 826
BlsI	GCNGC	2 cut(s)	691, 827
Bme1390I	CCNGG	3 cut(s)	786, 787, 874
BmeT110I	CYCGRG	1 cut(s)	785
BmgT120I	GGNCC	2 cut(s)	251, 1167
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	3 cut(s)	786, 787, 874
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	877
BpuEI	CTTGAG	1 cut(s)	1100
BpuMI	CCSGG	2 cut(s)	786, 787
BsaAI	YACGTR	1 cut(s)	62
BsaI	GGTCTC	2 cut(s)	719, 729
BsaJI	CCNNGG	2 cut(s)	785, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 710, 1034
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	4 cut(s)	137, 535, 860, 1096
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	874
BseDI	CCNNGG	2 cut(s)	785, 786
BseGI	GGATG	3 cut(s)	115, 796, 935
BseLI	CCNNNNNNNGG	3 cut(s)	143, 710, 1034
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	273, 531
BseNI	ACTGG	4 cut(s)	137, 535, 860, 1096
BseRI	GAGGAG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	852
BseXI	GCAGC	1 cut(s)	812
BshFI	GGCC	4 cut(s)	253, 692, 776, 1168
BshNI	GGYRCC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	3 cut(s)	314, 777, 786
BslFI	GGGAC	2 cut(s)	585, 1136
BslI	CCNNNNNNNGG	3 cut(s)	143, 710, 1034
BsmAI	GTCTC	4 cut(s)	620, 719, 729, 977
BsmFI	GGGAC	2 cut(s)	585, 1136
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	4 cut(s)	253, 692, 776, 1168
Bso31I	GGTCTC	2 cut(s)	719, 729
BsoBI	CYCGRG	1 cut(s)	785
Bsp1286I	GDGCHC	1 cut(s)	852
Bsp143I	GATC	3 cut(s)	217, 346, 729
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	4 cut(s)	253, 692, 776, 1168
BspCNI	CTCAG	2 cut(s)	274, 530
BspHI	TCATGA	2 cut(s)	193, 426
BspLI	GGNNCC	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	2 cut(s)	719, 729
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	4 cut(s)	137, 535, 860, 1096
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	2 cut(s)	785, 786
BssMI	GATC	3 cut(s)	217, 346, 729
Bst2UI	CCWGG	1 cut(s)	874
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	3 cut(s)	162, 494, 1059
BstAPI	GCANNNNNTGC	1 cut(s)	825
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	778, 903, 1072
BstDEI	CTNAG	4 cut(s)	282, 517, 641, 771
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	3 cut(s)	115, 796, 935
BstKTI	GATC	3 cut(s)	220, 349, 732
BstMAI	GTCTC	4 cut(s)	620, 719, 729, 977
BstMBI	GATC	3 cut(s)	217, 346, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 825
BstNI	CCWGG	1 cut(s)	874
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	3 cut(s)	784, 785, 872
BstSFI	CTRYAG	2 cut(s)	24, 604
BstSLI	GKGCMC	1 cut(s)	852
BstV1I	GCAGC	1 cut(s)	812
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	4 cut(s)	253, 692, 776, 1168
BtgZI	GCGATG	2 cut(s)	172, 334
BtsCI	GGATG	3 cut(s)	115, 796, 935
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	3 cut(s)	778, 903, 1072
CciI	TCATGA	2 cut(s)	193, 426
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	2 cut(s)	251, 1167
Cfr9I	CCCGGG	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	556
CspCI	CAANNNNNGTGG	2 cut(s)	985, 1020
CviAII	CATG	5 cut(s)	194, 405, 427, 1024, 1182
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	4 cut(s)	282, 517, 641, 771
DpnI	GATC	3 cut(s)	219, 348, 731
DpnII	GATC	3 cut(s)	217, 346, 729
EaeI	YGGCCR	1 cut(s)	690
Eam1104I	CTCTTC	3 cut(s)	162, 494, 1059
EarI	CTCTTC	3 cut(s)	162, 494, 1059
Eco31I	GGTCTC	2 cut(s)	719, 729
Eco88I	CYCGRG	1 cut(s)	785
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	1167
EcoRII	CCWGG	1 cut(s)	872
EcoT22I	ATGCAT	1 cut(s)	1183
FaeI	CATG	5 cut(s)	197, 408, 430, 1027, 1185
FaqI	GGGAC	2 cut(s)	585, 1136
FatI	CATG	5 cut(s)	193, 404, 426, 1023, 1181
FauNDI	CATATG	1 cut(s)	840
FbaI	TGATCA	2 cut(s)	346, 729
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	2 cut(s)	690, 826
FokI	GGATG	3 cut(s)	122, 803, 942
Fsp4HI	GCNGC	2 cut(s)	690, 826
FspBI	CTAG	2 cut(s)	255, 987
GluI	GCNGC	2 cut(s)	690, 826
GsuI	CTGGAG	1 cut(s)	877
HaeIII	GGCC	4 cut(s)	253, 692, 776, 1168
HapII	CCGG	3 cut(s)	314, 777, 786
Hin1II	CATG	5 cut(s)	197, 408, 430, 1027, 1185
HpaII	CCGG	3 cut(s)	314, 777, 786
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	7 cut(s)	124, 283, 351, 394, 734, 961, 976
Hpy188III	TCNNGA	4 cut(s)	194, 427, 1061, 1137
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	3 cut(s)	704, 887, 1180
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	8 cut(s)	4, 378, 422, 491, 551, 680, 828, 1181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 825
HpyF3I	CTNAG	4 cut(s)	282, 517, 641, 771
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	5 cut(s)	197, 408, 430, 1027, 1185
KroI	GCCGGC	1 cut(s)	776
KroNI	GCCGGC	1 cut(s)	778
Ksp22I	TGATCA	2 cut(s)	346, 729
Kzo9I	GATC	3 cut(s)	217, 346, 729
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	20, 316
Lsp1109I	GCAGC	1 cut(s)	812
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	255, 987
MaeII	ACGT	1 cut(s)	61
MalI	GATC	3 cut(s)	219, 348, 731
MboI	GATC	3 cut(s)	217, 346, 729
MboII	GAAGA	5 cut(s)	82, 179, 193, 511, 1076
MhlI	GDGCHC	1 cut(s)	852
MluCI	AATT	7 cut(s)	10, 183, 222, 563, 831, 1045, 1111
MlyI	GAGTC	5 cut(s)	242, 293, 398, 1118, 1134
MmeI	TCCRAC	1 cut(s)	305
Mph1103I	ATGCAT	1 cut(s)	1183
MroNI	GCCGGC	1 cut(s)	776
MseI	TTAA	3 cut(s)	209, 225, 656
MslI	CAYNNNNRTG	2 cut(s)	723, 843
MspI	CCGG	3 cut(s)	314, 777, 786
MspR9I	CCNGG	3 cut(s)	786, 787, 874
Mva1269I	GAATGC	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	874
MwoI	GCNNNNNNNGC	2 cut(s)	686, 825
NaeI	GCCGGC	1 cut(s)	778
NciI	CCSGG	2 cut(s)	786, 787
NdeI	CATATG	1 cut(s)	840
NdeII	GATC	3 cut(s)	217, 346, 729
NgoMIV	GCCGGC	1 cut(s)	776
NlaIII	CATG	5 cut(s)	197, 408, 430, 1027, 1185
NlaIV	GGNNCC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	1183
NspI	RCATGY	1 cut(s)	1027
PagI	TCATGA	2 cut(s)	193, 426
PaqCI	CACCTGC	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	162
PctI	GAATGC	1 cut(s)	780
PdiI	GCCGGC	1 cut(s)	778
PfeI	GAWTC	5 cut(s)	94, 400, 458, 1013, 1051
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	691, 827
PleI	GAGTC	5 cut(s)	241, 292, 397, 1118, 1134
PpsI	GAGTC	5 cut(s)	241, 292, 397, 1118, 1134
Ppu21I	YACGTR	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	872
PspGI	CCWGG	1 cut(s)	872
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	251, 1167
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	2 cut(s)	723, 843
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	209, 225, 656
SatI	GCNGC	2 cut(s)	690, 826
Sau3AI	GATC	3 cut(s)	217, 346, 729
Sau96I	GGNCC	2 cut(s)	251, 1167
SchI	GAGTC	5 cut(s)	242, 293, 398, 1118, 1134
ScrFI	CCNGG	3 cut(s)	786, 787, 874
SduI	GDGCHC	1 cut(s)	852
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	2 cut(s)	24, 604
SmaI	CCCGGG	1 cut(s)	787
SmiMI	CAYNNNNRTG	2 cut(s)	723, 843
SmlI	CTYRAG	1 cut(s)	1079
SmoI	CTYRAG	1 cut(s)	1079
SpeI	ACTAGT	1 cut(s)	986
Sse9I	AATT	7 cut(s)	10, 183, 222, 563, 831, 1045, 1111
SsiI	CCGC	1 cut(s)	689
SspMI	CTAG	2 cut(s)	255, 987
StyD4I	CCNGG	3 cut(s)	784, 785, 872
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	64
TasI	AATT	7 cut(s)	10, 183, 222, 563, 831, 1045, 1111
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	5 cut(s)	94, 400, 458, 1013, 1051
Tru1I	TTAA	3 cut(s)	209, 225, 656
Tru9I	TTAA	3 cut(s)	209, 225, 656
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	825
TspDTI	ATGAA	6 cut(s)	254, 282, 443, 486, 906, 1043
TspGWI	ACGGA	2 cut(s)	107, 559
TspMI	CCCGGG	1 cut(s)	785
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	3 cut(s)	10, 183, 831
XceI	RCATGY	1 cut(s)	1027
XmaI	CCCGGG	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	2 cut(s)	255, 987
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.