Prupe.1G108600_v2.0.a1

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012435
Physical Location & Seq
Forward (+)
8682671 .. 8685041
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G108600.1

Sequence Viewer

Length: 744 bp
ATGACGATGGGGACGACGACGACGCAGGCGTACGGTGAGCCGTGGTACTGGGACAACCGCTACGCCAACGAATCAGGGCCGTTCGATTGGTACCAGAAGTACCAATCTTTGGCGCCGCTCATCAATCTCTACGTCCCCCGCCACTCCAACCAGCACCATCGCATCCTCGTCGTCGGTTGCGGCAACTCAGCCTTCAGCGAAGGGATGGCTGATGATGGATACGATGATGTGGTTAGTATTGACATTTCCTCTGTGGTCATCCAAGCTATGCAGGACAAGTACTCTGACCGTCCACACCTCAAATATTTGCAAATGGATGTTCGAGATATGAGTGCTTTCCAAACTGATTCCTTTGATGCTGTTGTTGACAAAGGAACTCTAGACTCTCTGTTGTGTGGAAGTAATTCGCGACAAAATGCTGCTGAAATGCTTGACGAAGTTTGGAGGGTCCTCAAGGATAAAGGAGTCTATATTCTGATCACGTACGGAGCTCCATTGTATCGTTTGCATTTGTTGAGAGAGTCATGCTCGTGGACGATAAAACTTCATGTGATAGAGAAACTTGCCTGCGAAGATAAATCAGAACCTCCAATATGGGAGCTGACAAATCCTGTTCCATTGAATGACGATGGAAGCTCAGCGGAGGAATTGCTCGGAAACAATCCTGATGTGCATTATATTTACGTTTGTGCGAAGGATAATTCTTTAAAGCCAGGCCTTAAGCGTGAAACATCAGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

248

Amino Acids

28.0

Weight (kDa)

4.83

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17365 AT3G17365
fragaria_vesca FvH4_4g21180 FvH4_4g21180
malus_domestica MD13G1144200.v1.1
prunus_persica Prupe.1G108600_v2.0.a1 Prupe.1G108600_v2.0.a1
pyrus_communis pycom16g12340
rosa_chinensis RchiOBHm_Chr4g0426751
rosa_laevigata RLG00000007280
rosa_multiflora Rmu_co8157368.1_g000001 Rmu_sc0000953.1_g000002
rosa_roxburghii Rroxscaffold_5G00368750
rosa_rugosa Rorug04G0214600
rosa_samantha Rh4AG269700 Rh4BG276000 Rh4CG290600 Rh4DG273000
rosa_wichuraiana Rw4G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 90
AccB1I GGYRCC 2 cut(s) 90, 112
AccB7I CCANNNNNTGG 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 118
AccII CGCG 1 cut(s) 409
AciI CCGC 5 cut(s) 58, 116, 139, 180, 641
AcuI CTGAAG 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 6 cut(s) 32, 47, 92, 101, 281, 485
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 1 cut(s) 719
AgsI TTSAA 1 cut(s) 622
AjnI CCWGG 1 cut(s) 712
AluBI AGCT 4 cut(s) 266, 491, 601, 636
AluI AGCT 4 cut(s) 266, 491, 601, 636
Alw21I GWGCWC 1 cut(s) 493
AoxI GGCC 2 cut(s) 77, 715
ApeKI GCWGC 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 403
Asp718I GGTACC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 77, 448
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 90, 112
BanII GRGCYC 1 cut(s) 493
BauI CACGAG 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 406
BccI CCATC 4 cut(s) 165, 199, 209, 623
BceAI ACGGC 2 cut(s) 25, 64
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 714
BciVI GTATCC 1 cut(s) 212
BclI TGATCA 1 cut(s) 477
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 719
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 3 cut(s) 116, 181, 420
BlpI GCTNAGC 1 cut(s) 637
BlsI GCNGC 3 cut(s) 117, 182, 421
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 2 cut(s) 77, 448
BmiI GGNNCC 3 cut(s) 92, 114, 449
BmrFI CCNGG 1 cut(s) 714
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 171, 346
BmuI ACTGGG 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 512, 544
Bpu1102I GCTNAGC 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 4 cut(s) 162, 210, 258, 322
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 201, 651
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 79, 717
BshNI GGYRCC 2 cut(s) 90, 112
BsiHKAI GWGCWC 1 cut(s) 493
BsiWI CGTACG 2 cut(s) 30, 483
BslFI GGGAC 3 cut(s) 25, 65, 119
BslI CCNNNNNNNGG 1 cut(s) 109
BsmFI GGGAC 3 cut(s) 25, 65, 119
BsnI GGCC 2 cut(s) 79, 717
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 1 cut(s) 477
Bsp1720I GCTNAGC 1 cut(s) 637
Bsp68I TCGCGA 1 cut(s) 409
BspACI CCGC 5 cut(s) 58, 116, 139, 180, 641
BspANI GGCC 2 cut(s) 79, 717
BspCNI CTCAG 2 cut(s) 200, 650
BspFNI CGCG 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 92, 114, 449
BspT107I GGYRCC 2 cut(s) 90, 112
BspTI CTTAAG 1 cut(s) 719
BsrBI CCGCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 1 cut(s) 477
BssNI GRCGYC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 529
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 2 cut(s) 35, 290
BstACI GRCGYC 1 cut(s) 113
BstAFI CTTAAG 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 27, 568
BstDEI CTNAG 2 cut(s) 187, 637
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 4 cut(s) 162, 210, 258, 322
BstFNI CGCG 1 cut(s) 409
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 480
BstMBI GATC 1 cut(s) 477
BstNI CCWGG 1 cut(s) 714
BstSCI CCNGG 1 cut(s) 712
BstUI CGCG 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 406
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 79, 717
BtgI CCRYGG 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 4 cut(s) 162, 210, 258, 322
BtuMI TCGCGA 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 27, 568
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 77, 448
CseI GACGC 1 cut(s) 31
Csp6I GTAC 6 cut(s) 31, 46, 91, 100, 280, 484
CviAII CATG 2 cut(s) 525, 548
CviQI GTAC 6 cut(s) 31, 46, 91, 100, 280, 484
DdeI CTNAG 2 cut(s) 187, 637
DinI GGCGCC 1 cut(s) 114
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
DraI TTTAAA 1 cut(s) 708
Ecl136II GAGCTC 1 cut(s) 491
Eco147I AGGCCT 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 493
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
FaeI CATG 2 cut(s) 528, 551
FaiI YATR 7 cut(s) 269, 329, 471, 526, 549, 595, 678
FaqI GGGAC 3 cut(s) 25, 65, 119
FatI CATG 2 cut(s) 524, 547
FauI CCCGC 1 cut(s) 146
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 3 cut(s) 116, 181, 420
FokI GGATG 4 cut(s) 149, 217, 245, 329
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 3 cut(s) 116, 181, 420
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 114
GluI GCNGC 3 cut(s) 116, 181, 420
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 2 cut(s) 79, 717
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 2 cut(s) 528, 551
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 5 cut(s) 71, 347, 383, 465, 521
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 3 cut(s) 293, 367, 534
Hpy188I TCNGA 4 cut(s) 286, 477, 583, 656
Hpy188III TCNNGA 4 cut(s) 323, 380, 408, 665
Hpy8I GTNNAC 3 cut(s) 293, 367, 534
Hpy99I CGWCG 5 cut(s) 19, 22, 25, 173, 176
HpyAV CCTTC 3 cut(s) 194, 202, 688
HpyCH4III ACNGT 2 cut(s) 35, 290
HpyCH4IV ACGT 3 cut(s) 132, 482, 684
HpyCH4V TGCA 4 cut(s) 271, 310, 508, 673
HpyF3I CTNAG 2 cut(s) 187, 637
HpySE526I ACGT 3 cut(s) 132, 482, 684
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 528, 551
HspAI GCGC 1 cut(s) 113
KasI GGCGCC 1 cut(s) 112
KpnI GGTACC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 488, 496, 598
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 2 cut(s) 171, 346
MaeI CTAG 1 cut(s) 380
MaeII ACGT 3 cut(s) 132, 482, 684
MalI GATC 1 cut(s) 479
MbiI CCGCTC 1 cut(s) 118
MboI GATC 1 cut(s) 477
MboII GAAGA 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 3 cut(s) 403, 647, 700
Mly113I GGCGCC 1 cut(s) 113
MlyI GAGTC 3 cut(s) 377, 474, 530
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 176, 259, 308, 438, 461, 597, 637
MroXI GAANNNNTTC 1 cut(s) 403
MseI TTAA 2 cut(s) 707, 720
MslI CAYNNNNRTG 1 cut(s) 529
MspA1I CMGCKG 1 cut(s) 641
MspCI CTTAAG 1 cut(s) 719
MspR9I CCNGG 1 cut(s) 714
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 409
NarI GGCGCC 1 cut(s) 113
NdeII GATC 1 cut(s) 477
NlaIII CATG 2 cut(s) 528, 551
NlaIV GGNNCC 3 cut(s) 92, 114, 449
NruI TCGCGA 1 cut(s) 409
PceI AGGCCT 1 cut(s) 717
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 26
PdmI GAANNNNTTC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 71, 347
Pfl23II CGTACG 2 cut(s) 30, 483
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 3 cut(s) 117, 182, 421
PleI GAGTC 3 cut(s) 377, 473, 529
PluTI GGCGCC 1 cut(s) 116
PpsI GAGTC 3 cut(s) 377, 473, 529
Ppu21I YACGTR 1 cut(s) 483
PpuMI RGGWCCY 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspLI CGTACG 2 cut(s) 30, 483
PspN4I GGNNCC 3 cut(s) 92, 114, 449
PspPI GGNCC 2 cut(s) 77, 448
PspPPI RGGWCCY 1 cut(s) 448
RruI TCGCGA 1 cut(s) 409
RsaI GTAC 6 cut(s) 32, 47, 92, 101, 281, 485
RsaNI GTAC 6 cut(s) 31, 46, 91, 100, 280, 484
RseI CAYNNNNRTG 1 cut(s) 529
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 707, 720
SatI GCNGC 3 cut(s) 116, 181, 420
Sau3AI GATC 1 cut(s) 477
Sau96I GGNCC 2 cut(s) 77, 448
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 3 cut(s) 377, 474, 530
ScrFI CCNGG 1 cut(s) 714
SduI GDGCHC 1 cut(s) 493
SetI ASST 9 cut(s) 135, 268, 300, 485, 493, 589, 603, 638, 687
SfaNI GCATC 2 cut(s) 171, 346
SfoI GGCGCC 1 cut(s) 114
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 2 cut(s) 452, 719
SmoI CTYRAG 2 cut(s) 452, 719
Sse9I AATT 3 cut(s) 403, 647, 700
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 5 cut(s) 58, 116, 139, 180, 641
SspDI GGCGCC 1 cut(s) 112
SspI AATATT 1 cut(s) 305
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 493
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 1 cut(s) 712
TaaI ACNGT 2 cut(s) 35, 290
TaiI ACGT 3 cut(s) 135, 485, 687
TaqI TCGA 2 cut(s) 84, 322
TasI AATT 3 cut(s) 403, 647, 700
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 118, 183
TfiI GAWTC 2 cut(s) 71, 347
Tru1I TTAA 2 cut(s) 707, 720
Tru9I TTAA 2 cut(s) 707, 720
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 1 cut(s) 501
Van91I CCANNNNNTGG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 719
VpaK11BI GGWCC 1 cut(s) 448
XbaI TCTAGA 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 1 cut(s) 380
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.