Rorug04G0214600

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012435
Physical Location & Seq
Reverse (-)
37217111 .. 37217970
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0214600.1

Sequence Viewer

Length: 654 bp
ATGAGCACCACCGCCACCGCCACCGCCACCGCTCTGCGCTCGTCGTCTCTCATGGCCGTCCTCCTCCTCGCCTCCTTGTTCGTCGCTCTCGGCGCCGCAAATTCAGCAAAAGAATCGCCGCCGTCCGCTTGCGCAGACGAGCTCGTCCGGTTCTCGCCGTGCCTGTCGTACGTGGCGTCGCCGCCGAACAACCTCTCCGACTCGCCGGCCTCCAAGTGCTGCGACGCGTTCTCGTCTGCGGCGGAGTCCGGCCGCGCCGTTTGCCTCTGCTACCTAGTCCAGGATCCTCCGATGCTCGGCTTTCCGGTGACCGTCGCTCGCGTCCTCTCGCTCTCTTCCGTTTGCGGTCGCCGGAACTCCACCGCTGCTTCTACTTCTCTTCAGTCCCTTTGCTCAGAGTCGCCGGAACTCCCTCCTCTCCGCAACACCACGATTTCGGTGATTTCAGGTCCTCCTCCTTCCGGTCATGAAACGGCTTCATCTCCTTCGCCAAAACCAACAAACAAGTCAAGCACAAGACCAAGCTTCTCAACTCCACCGAGCTCAGCGGTAGAACCAGCAAGAGTGTCGTCGTCGGCGGCGGCCATGAAACGAATTTTCAAGAACAATACTTCCTGGTTTCTACCTGCCATATCGATTTTCATACTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

217

Amino Acids

22.34

Weight (kDa)

8.88

Isoelectric Point (pI)

74.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 32 - 121 1.8e-14 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17365 AT3G17365
fragaria_vesca FvH4_4g21180 FvH4_4g21180
malus_domestica MD13G1144200.v1.1
prunus_persica Prupe.1G108600_v2.0.a1 Prupe.1G108600_v2.0.a1
pyrus_communis pycom16g12340
rosa_chinensis RchiOBHm_Chr4g0426751
rosa_laevigata RLG00000007280
rosa_multiflora Rmu_co8157368.1_g000001 Rmu_sc0000953.1_g000002
rosa_roxburghii Rroxscaffold_5G00368750
rosa_rugosa Rorug04G0214600
rosa_samantha Rh4AG269700 Rh4BG276000 Rh4CG290600 Rh4DG273000
rosa_wichuraiana Rw4G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
Acc16I TGCGCA 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 32
AccII CGCG 3 cut(s) 227, 255, 321
AclWI GGATC 2 cut(s) 278, 291
AcoI YGGCCR 3 cut(s) 54, 250, 582
AcsI RAATTY 2 cut(s) 100, 594
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 2 cut(s) 93, 176
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 280, 296, 461
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 1 cut(s) 601
AjnI CCWGG 2 cut(s) 279, 614
AloI GAACNNNNNNTCC 4 cut(s) 179, 211, 596, 628
AluBI AGCT 3 cut(s) 142, 525, 543
AluI AGCT 3 cut(s) 142, 525, 543
Alw21I GWGCWC 3 cut(s) 8, 144, 545
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 2 cut(s) 278, 291
AoxI GGCC 4 cut(s) 54, 207, 250, 582
ApeKI GCWGC 2 cut(s) 219, 365
ApoI RAATTY 2 cut(s) 100, 594
AspLEI GCGC 4 cut(s) 39, 95, 134, 257
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 319, 451
AvaII GGWCC 1 cut(s) 449
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 144, 545
Bbv12I GWGCWC 3 cut(s) 8, 144, 545
BbvI GCAGC 2 cut(s) 206, 352
BceAI ACGGC 5 cut(s) 41, 106, 142, 242, 489
BcgI CGANNNNNNTGC 4 cut(s) 96, 130, 549, 583
BciT130I CCWGG 2 cut(s) 281, 616
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 9 cut(s) 96, 119, 182, 220, 240, 253, 366, 579, 582
BlpI GCTNAGC 1 cut(s) 544
BlsI GCNGC 9 cut(s) 97, 120, 183, 221, 241, 254, 367, 580, 583
Bme1390I CCNGG 2 cut(s) 281, 616
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 94, 285
BmrFI CCNGG 2 cut(s) 281, 616
BmsI GCATC 1 cut(s) 282
Bpu1102I GCTNAGC 1 cut(s) 544
Bsa29I ATCGAT 1 cut(s) 635
BsaAI YACGTR 1 cut(s) 172
BsaHI GRCGYC 2 cut(s) 93, 176
BsaWI WCCGGW 3 cut(s) 147, 304, 461
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 296, 461
Bse118I RCCGGY 1 cut(s) 205
BseBI CCWGG 2 cut(s) 281, 616
BseCI ATCGAT 1 cut(s) 635
BseLI CCNNNNNNNGG 3 cut(s) 280, 296, 461
BseMII CTCAG 2 cut(s) 408, 558
BseRI GAGGAG 4 cut(s) 53, 56, 405, 444
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 206, 352
Bsh1236I CGCG 3 cut(s) 227, 255, 321
Bsh1285I CGRYCG 2 cut(s) 253, 349
BshFI GGCC 4 cut(s) 56, 209, 252, 584
BshNI GGYRCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 635
BsiEI CGRYCG 2 cut(s) 253, 349
BsiHKAI GWGCWC 3 cut(s) 8, 144, 545
BsiSI CCGG 7 cut(s) 148, 206, 249, 305, 352, 404, 462
BsiWI CGTACG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 3 cut(s) 280, 296, 461
BsmAI GTCTC 1 cut(s) 51
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 4 cut(s) 56, 209, 252, 584
Bsp1286I GDGCHC 3 cut(s) 8, 144, 545
Bsp143I GATC 1 cut(s) 283
Bsp1720I GCTNAGC 1 cut(s) 544
BspANI GGCC 4 cut(s) 56, 209, 252, 584
BspCNI CTCAG 2 cut(s) 407, 557
BspDI ATCGAT 1 cut(s) 635
BspFNI CGCG 3 cut(s) 227, 255, 321
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 94, 285
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 2 cut(s) 278, 291
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssMI GATC 1 cut(s) 283
BssNI GRCGYC 2 cut(s) 93, 176
Bst2UI CCWGG 2 cut(s) 281, 616
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 340, 384
BstACI GRCGYC 2 cut(s) 93, 176
BstBAI YACGTR 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 130, 207, 319
BstDEI CTNAG 2 cut(s) 394, 544
BstEII GGTNACC 1 cut(s) 307
BstENI CCTNNNNNAGG 1 cut(s) 278
BstFNI CGCG 3 cut(s) 227, 255, 321
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 4 cut(s) 39, 95, 134, 257
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 283
BstMCI CGRYCG 2 cut(s) 253, 349
BstMWI GCNNNNNNNGC 3 cut(s) 92, 104, 261
BstNI CCWGG 2 cut(s) 281, 616
BstPI GGTNACC 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 279, 614
BstUI CGCG 3 cut(s) 227, 255, 321
BstV1I GCAGC 2 cut(s) 206, 352
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BstZI CGGCCG 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 635
BsuRI GGCC 4 cut(s) 56, 209, 252, 584
BsuTUI ATCGAT 1 cut(s) 635
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 3 cut(s) 130, 207, 319
CciI TCATGA 1 cut(s) 466
CfoI GCGC 4 cut(s) 39, 95, 134, 257
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 635
CseI GACGC 3 cut(s) 165, 233, 310
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 52, 467, 586
CviJI RGCY 9 cut(s) 56, 142, 209, 252, 300, 476, 525, 543, 584
CviKI_1 RGCY 9 cut(s) 56, 142, 209, 252, 300, 476, 525, 543, 584
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 394, 544
DinI GGCGCC 1 cut(s) 94
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 3 cut(s) 54, 250, 582
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 340, 384
EarI CTCTTC 2 cut(s) 340, 384
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 2 cut(s) 142, 543
EclXI CGGCCG 1 cut(s) 250
Eco24I GRGCYC 2 cut(s) 144, 545
Eco47I GGWCC 1 cut(s) 449
Eco52I CGGCCG 1 cut(s) 250
Eco53kI GAGCTC 2 cut(s) 142, 543
Eco57I CTGAAG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 307
EcoICRI GAGCTC 2 cut(s) 142, 543
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 279, 614
EcoT38I GRGCYC 2 cut(s) 144, 545
EgeI GGCGCC 1 cut(s) 94
EheI GGCGCC 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 3 cut(s) 55, 470, 589
FaiI YATR 5 cut(s) 53, 468, 587, 632, 644
FaqI GGGAC 1 cut(s) 370
FatI CATG 3 cut(s) 51, 466, 585
Fnu4HI GCNGC 9 cut(s) 96, 119, 182, 220, 240, 253, 366, 579, 582
FriOI GRGCYC 2 cut(s) 144, 545
Fsp4HI GCNGC 9 cut(s) 96, 119, 182, 220, 240, 253, 366, 579, 582
FspBI CTAG 1 cut(s) 275
FspI TGCGCA 1 cut(s) 133
GlaI GCGC 4 cut(s) 38, 94, 133, 256
GluI GCNGC 9 cut(s) 96, 119, 182, 220, 240, 253, 366, 579, 582
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 4 cut(s) 56, 209, 252, 584
HapII CCGG 7 cut(s) 148, 206, 249, 305, 352, 404, 462
HgaI GACGC 3 cut(s) 165, 233, 310
HhaI GCGC 4 cut(s) 39, 95, 134, 257
Hin1I GRCGYC 2 cut(s) 93, 176
Hin1II CATG 3 cut(s) 55, 470, 589
Hin6I GCGC 4 cut(s) 37, 93, 132, 255
HinP1I GCGC 4 cut(s) 37, 93, 132, 255
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 4 cut(s) 113, 200, 245, 398
HpaII CCGG 7 cut(s) 148, 206, 249, 305, 352, 404, 462
HphI GGTGA 2 cut(s) 319, 451
Hpy188I TCNGA 4 cut(s) 199, 291, 397, 653
Hpy188III TCNNGA 2 cut(s) 467, 601
Hpy99I CGWCG 7 cut(s) 46, 86, 181, 227, 317, 574, 577
HpyAV CCTTC 2 cut(s) 468, 495
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 104, 261
HpyF3I CTNAG 2 cut(s) 394, 544
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 2 cut(s) 93, 176
Hsp92II CATG 3 cut(s) 55, 470, 589
HspAI GCGC 4 cut(s) 37, 93, 132, 255
KasI GGCGCC 1 cut(s) 92
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Kzo9I GATC 1 cut(s) 283
Lsp1109I GCAGC 2 cut(s) 206, 352
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 285
MbiI CCGCTC 1 cut(s) 32
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 327, 371
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 3 cut(s) 8, 144, 545
MluCI AATT 2 cut(s) 100, 594
MluI ACGCGT 1 cut(s) 225
Mly113I GGCGCC 1 cut(s) 93
MlyI GAGTC 3 cut(s) 194, 254, 407
MmeI TCCRAC 1 cut(s) 222
MroNI GCCGGC 1 cut(s) 205
MspA1I CMGCKG 2 cut(s) 365, 548
MspI CCGG 7 cut(s) 148, 206, 249, 305, 352, 404, 462
MspR9I CCNGG 2 cut(s) 281, 616
MvaI CCWGG 2 cut(s) 281, 616
MvnI CGCG 3 cut(s) 227, 255, 321
MwoI GCNNNNNNNGC 3 cut(s) 92, 104, 261
NaeI GCCGGC 1 cut(s) 207
NarI GGCGCC 1 cut(s) 93
NdeII GATC 1 cut(s) 283
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 3 cut(s) 55, 470, 589
NlaIV GGNNCC 2 cut(s) 94, 285
NmeAIII GCCGAG 2 cut(s) 69, 276
NmuCI GTSAC 1 cut(s) 307
NsbI TGCGCA 1 cut(s) 133
PagI TCATGA 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 113
Pfl23II CGTACG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 9 cut(s) 97, 120, 183, 221, 241, 254, 367, 580, 583
PleI GAGTC 3 cut(s) 194, 253, 406
PluTI GGCGCC 1 cut(s) 96
PpsI GAGTC 3 cut(s) 194, 253, 406
Ppu21I YACGTR 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 449
Psp124BI GAGCTC 2 cut(s) 144, 545
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 2 cut(s) 279, 614
PspEI GGTNACC 1 cut(s) 307
PspGI CCWGG 2 cut(s) 279, 614
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 94, 285
PspPI GGNCC 1 cut(s) 449
PspPPI RGGWCCY 1 cut(s) 449
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SacI GAGCTC 2 cut(s) 144, 545
SatI GCNGC 9 cut(s) 96, 119, 182, 220, 240, 253, 366, 579, 582
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 3 cut(s) 194, 254, 407
ScrFI CCNGG 2 cut(s) 281, 616
SduI GDGCHC 3 cut(s) 8, 144, 545
SetI ASST 8 cut(s) 144, 174, 195, 276, 451, 527, 545, 628
SfaNI GCATC 1 cut(s) 282
SfoI GGCGCC 1 cut(s) 94
SinI GGWCC 1 cut(s) 449
Sse9I AATT 2 cut(s) 100, 594
SspDI GGCGCC 1 cut(s) 92
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 2 cut(s) 144, 545
StyD4I CCNGG 2 cut(s) 279, 614
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 635
TasI AATT 2 cut(s) 100, 594
TauI GCSGC 7 cut(s) 98, 121, 184, 242, 255, 581, 584
TfiI GAWTC 1 cut(s) 113
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 219, 365
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 468, 483, 602, 631
TspGWI ACGGA 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 278
XapI RAATTY 2 cut(s) 100, 594
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.