Prupe.1G110800_v2.0.a1

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015600
Physical Location & Seq
Forward (+)
8854460 .. 8857063
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G110800.1

Sequence Viewer

Length: 1203 bp
ATGATTGTGAGTGAGAAAATGGTTGCTGAAGCGGAGGTTATATGCCAGAAGACCATGGCCATGCCTGTGCTGGACATGAAGTACCGTGTCTGCGTTTCCAAGGAGCACAACCGTCAGATCGACGTGGCCTCCCCGCCTTCTTCTGCTCCGAGCTTCGGCGAGGTTTGCGTCTCCGAAACGATTTCCACTGAGATATCTCGCTTCAAATCGGTTGTGAGTTGCACAGAGACCATTAATAAAGCCGTAATGGAGTCTTCTGCCATCAAGTTTGTCCCGGACATTCATTCAGGAAGCCACACTGACATCGGAGGAAGGGATTCGATGGATGATGAACACATTCGGATAGATGATCTATCTGCCCATGTGGGGCCTCTCTTCAAGTCTCCCTTGCCAAGTGCATTTTATGCAGTTTTTGATGGTCACGGTGGGCCTGAGGCAGCTTCTTATGTCAAAAGGAATGCCATGAGACTCTTCTTTGAAGATGCTGATTTGCCGCAGAGAATGGATATGGATGCTGTTTTCTTCAGAGAGTTGGAGAATTCCCACAGGAAAGCATTTCTACTGGCAGACGATGCCTTGGCTCATGAACACAGCGTGAGCAGTTTGTGTGGAACAACAGCACTAACTGCTTTAATTCTTGGAAGGCATTTGCTGGTTGCAAATGCTGGTGACTGTCGAGCAGTTCTTTGCAGGAAAGGAGTAGCAGTTGACATGTCTCAAGACCACAAGCCAACTTACTTGCCGGAACGCAGGCGTGTTGAGCAGTTGGGTGGTCACATTGATGACGGGTATCTTAATGGTCTCTCAGTCACCCGAGCCCTTGGAGATTGGGACTTGAAATTGCCACTCGGTTCATCATCACCTCTCATTGCTGAGCCAGATGTTCAACAGGTTATGTTAACAGAAGATGATGAGTTTTTGATCATTGGTTGTGATGGGATCTGGGATGTTATGTCAAGCCAATATGCTGTGAGTCTTGTTCGGCGTGGTCTGCGGAGGCATGATGACCCACAACAGTGTGCCAGAGAACTTGTCAAGGAAGCCTTGCGCTTGAATACAACTGACAATCTCACCGTTATTGTTGTGCGCCTCTCTTCTCCTAGTCGTGTTGTTGAGTGCTCACCCCAGCGCCCAAGGTTGAGGATCTGCAGTCTATCTGAGGAAGCACGCAGCCGGTTGAGAAGCTTGTTAGGAGGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

401

Amino Acids

44.13

Weight (kDa)

5.66

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015600)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g20910
malus_domestica MD13G1147300.v1.1 MD16G1145700.v1.1
prunus_persica Prupe.1G110800_v2.0.a1
pyrus_communis pycom16g12490
rosa_chinensis RchiOBHm_Chr4g0426341
rosa_laevigata RLG00000007301
rosa_multiflora Rmu_sc0007942.1_g000010 Rmu_sc0020213.1_g000001
rosa_roxburghii Rroxscaffold_5G00368350
rosa_rugosa Rorug04G0210300
rosa_samantha Rh4AG267300 Rh4BG273200 Rh4CG287400 Rh4DG269900
rosa_wichuraiana Rw4G023160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 32, 134, 494, 994
AclWI GGATC 2 cut(s) 947, 1151
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 538
AcuI CTGAAG 2 cut(s) 48, 508
AdeI CACNNNGTG 1 cut(s) 595
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 155, 366
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 6 cut(s) 205, 379, 479, 838, 887, 1054
AjiI CACGTC 1 cut(s) 124
AleI CACNNNNGTG 1 cut(s) 1015
AluBI AGCT 3 cut(s) 153, 440, 1185
AluI AGCT 3 cut(s) 153, 440, 1185
Alw21I GWGCWC 2 cut(s) 108, 1121
Alw26I GTCTC 6 cut(s) 175, 221, 387, 460, 720, 806
AlwI GGATC 2 cut(s) 947, 1151
Ama87I CYCGRG 1 cut(s) 813
AoxI GGCC 4 cut(s) 57, 126, 368, 428
ApeKI GCWGC 2 cut(s) 437, 1170
ApoI RAATTY 1 cut(s) 538
AseI ATTAAT 1 cut(s) 234
Asp700I GAANNNNTTC 2 cut(s) 316, 336
AspLEI GCGC 3 cut(s) 1050, 1089, 1131
AspS9I GGNCC 2 cut(s) 368, 428
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 5 cut(s) 680, 802, 852, 1063, 1113
AvaI CYCGRG 1 cut(s) 813
AxyI CCTNAGG 1 cut(s) 432
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 820
BbsI GAAGAC 2 cut(s) 56, 246
Bbv12I GWGCWC 2 cut(s) 108, 1121
BbvI GCAGC 2 cut(s) 449, 1182
BccI CCATC 4 cut(s) 269, 316, 410, 929
BceAI ACGGC 1 cut(s) 227
BclI TGATCA 1 cut(s) 921
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 6 cut(s) 175, 221, 387, 460, 720, 806
BfaI CTAG 1 cut(s) 1101
BfmI CTRYAG 1 cut(s) 1147
BfoI RGCGCY 1 cut(s) 1132
BisI GCNGC 3 cut(s) 438, 494, 1171
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 3 cut(s) 439, 495, 1172
Bme1390I CCNGG 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 813
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 368, 428
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 472, 502, 562
BpiI GAAGAC 2 cut(s) 56, 246
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 275
BsaI GGTCTC 2 cut(s) 221, 806
BsaJI CCNNGG 5 cut(s) 54, 99, 576, 820, 1133
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 690, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 366
Bse118I RCCGGY 1 cut(s) 1173
Bse1I ACTGG 1 cut(s) 567
Bse21I CCTNAGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 867
BseDI CCNNGG 5 cut(s) 54, 99, 576, 820, 1133
BseGI GGATG 3 cut(s) 331, 517, 952
BseLI CCNNNNNNNGG 2 cut(s) 155, 366
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 5 cut(s) 180, 423, 819, 864, 1149
BseNI ACTGG 1 cut(s) 567
BseXI GCAGC 2 cut(s) 449, 1182
BseYI CCCAGC 1 cut(s) 1125
BshFI GGCC 4 cut(s) 59, 128, 370, 430
BsiHKAI GWGCWC 2 cut(s) 108, 1121
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 3 cut(s) 275, 743, 1174
BslFI GGGAC 2 cut(s) 257, 845
BslI CCNNNNNNNGG 2 cut(s) 155, 366
BsmAI GTCTC 6 cut(s) 175, 221, 387, 460, 720, 806
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 2 cut(s) 257, 845
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 4 cut(s) 59, 128, 370, 430
Bso31I GGTCTC 2 cut(s) 221, 806
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 3 cut(s) 108, 820, 1121
Bsp143I GATC 5 cut(s) 117, 349, 921, 939, 1143
Bsp1720I GCTNAGC 1 cut(s) 873
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 32, 134, 494, 994
BspANI GGCC 4 cut(s) 59, 128, 370, 430
BspCNI CTCAG 5 cut(s) 181, 424, 818, 865, 1150
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 1151
BspPI GGATC 2 cut(s) 947, 1151
BspTNI GGTCTC 2 cut(s) 221, 806
BsrDI GCAATG 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 1173
BsrI ACTGG 1 cut(s) 567
BssAI RCCGGY 1 cut(s) 1173
BssECI CCNNGG 5 cut(s) 54, 99, 576, 820, 1133
BssMI GATC 5 cut(s) 117, 349, 921, 939, 1143
BssT1I CCWWGG 5 cut(s) 54, 99, 576, 820, 1133
Bst4CI ACNGT 6 cut(s) 86, 113, 425, 674, 1017, 1075
Bst6I CTCTTC 3 cut(s) 380, 476, 1099
BstAPI GCANNNNNTGC 3 cut(s) 404, 572, 626
BstC8I GCNNGC 2 cut(s) 752, 1168
BstDEI CTNAG 5 cut(s) 189, 432, 805, 873, 1158
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 331, 517, 952
BstH2I RGCGCY 1 cut(s) 1132
BstHHI GCGC 3 cut(s) 1050, 1089, 1131
BstKTI GATC 5 cut(s) 120, 352, 924, 942, 1146
BstMAI GTCTC 6 cut(s) 175, 221, 387, 460, 720, 806
BstMBI GATC 5 cut(s) 117, 349, 921, 939, 1143
BstMWI GCNNNNNNNGC 6 cut(s) 165, 404, 572, 626, 760, 991
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 1147
BstV1I GCAGC 2 cut(s) 449, 1182
BstV2I GAAGAC 2 cut(s) 56, 246
BstX2I RGATCY 2 cut(s) 939, 1143
BstYI RGATCY 2 cut(s) 939, 1143
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 4 cut(s) 59, 128, 370, 430
BtgI CCRYGG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 331, 517, 952
BtsIMutI CAGTG 3 cut(s) 186, 297, 1022
Cac8I GCNNGC 2 cut(s) 752, 1168
CciI TCATGA 1 cut(s) 583
CfoI GCGC 3 cut(s) 1050, 1089, 1131
Cfr10I RCCGGY 1 cut(s) 1173
Cfr13I GGNCC 2 cut(s) 368, 428
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 82
CviAII CATG 8 cut(s) 55, 61, 76, 362, 463, 584, 712, 1001
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 5 cut(s) 189, 432, 805, 873, 1158
DpnI GATC 5 cut(s) 119, 351, 923, 941, 1145
DpnII GATC 5 cut(s) 117, 349, 921, 939, 1143
DraIII CACNNNGTG 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 3 cut(s) 380, 476, 1099
EarI CTCTTC 3 cut(s) 380, 476, 1099
Eco130I CCWWGG 5 cut(s) 54, 99, 576, 820, 1133
Eco24I GRGCYC 1 cut(s) 820
Eco31I GGTCTC 2 cut(s) 221, 806
Eco32I GATATC 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 48, 508
Eco81I CCTNAGG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 538
EcoRV GATATC 1 cut(s) 195
EcoT14I CCWWGG 5 cut(s) 54, 99, 576, 820, 1133
EcoT38I GRGCYC 1 cut(s) 820
ErhI CCWWGG 5 cut(s) 54, 99, 576, 820, 1133
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 8 cut(s) 58, 64, 79, 365, 466, 587, 715, 1004
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 1028, 1060
FaqI GGGAC 2 cut(s) 257, 845
FatI CATG 8 cut(s) 54, 60, 75, 361, 462, 583, 711, 1000
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 921
Fnu4HI GCNGC 3 cut(s) 438, 494, 1171
FokI GGATG 3 cut(s) 338, 524, 959
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 3 cut(s) 438, 494, 1171
FspBI CTAG 1 cut(s) 1101
GlaI GCGC 3 cut(s) 1049, 1088, 1130
GluI GCNGC 3 cut(s) 438, 494, 1171
GsaI CCCAGC 1 cut(s) 1129
HaeII RGCGCY 1 cut(s) 1132
HaeIII GGCC 4 cut(s) 59, 128, 370, 430
HapII CCGG 3 cut(s) 275, 743, 1174
HgaI GACGC 1 cut(s) 157
HhaI GCGC 3 cut(s) 1050, 1089, 1131
Hin1II CATG 8 cut(s) 58, 64, 79, 365, 466, 587, 715, 1004
Hin6I GCGC 3 cut(s) 1048, 1087, 1129
HinP1I GCGC 3 cut(s) 1048, 1087, 1129
HincII GTYRAC 2 cut(s) 709, 900
HindII GTYRAC 2 cut(s) 709, 900
HindIII AAGCTT 1 cut(s) 1183
HinfI GANTC 4 cut(s) 251, 317, 468, 973
HpaI GTTAAC 1 cut(s) 900
HpaII CCGG 3 cut(s) 275, 743, 1174
HphI GGTGA 5 cut(s) 680, 802, 852, 1063, 1113
Hpy166II GTNNAC 2 cut(s) 709, 900
Hpy188I TCNGA 7 cut(s) 117, 150, 175, 308, 342, 527, 1159
Hpy188III TCNNGA 3 cut(s) 288, 584, 719
Hpy8I GTNNAC 2 cut(s) 709, 900
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 147, 306, 636
HpyCH4III ACNGT 6 cut(s) 86, 113, 425, 674, 1017, 1075
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 6 cut(s) 222, 398, 407, 659, 690, 1149
HpyF10VI GCNNNNNNNGC 6 cut(s) 165, 404, 572, 626, 760, 991
HpyF3I CTNAG 5 cut(s) 189, 432, 805, 873, 1158
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 8 cut(s) 58, 64, 79, 365, 466, 587, 715, 1004
HspAI GCGC 3 cut(s) 1048, 1087, 1129
Ksp22I TGATCA 1 cut(s) 921
KspAI GTTAAC 1 cut(s) 900
Kzo9I GATC 5 cut(s) 117, 349, 921, 939, 1143
LmnI GCTCC 2 cut(s) 103, 151
Lsp1109I GCAGC 2 cut(s) 449, 1182
LweI GCATC 3 cut(s) 472, 502, 562
MaeI CTAG 1 cut(s) 1101
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 4 cut(s) 419, 668, 773, 808
MalI GATC 5 cut(s) 119, 351, 923, 941, 1145
MboI GATC 5 cut(s) 117, 349, 921, 939, 1143
MboII GAAGA 9 cut(s) 61, 132, 246, 367, 463, 491, 514, 917, 1086
MfeI CAATTG 1 cut(s) 1198
MflI RGATCY 2 cut(s) 939, 1143
MhlI GDGCHC 3 cut(s) 108, 820, 1121
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 4 cut(s) 538, 633, 839, 1198
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 3 cut(s) 260, 462, 982
MmeI TCCRAC 1 cut(s) 513
Mox20I TGGCCA 1 cut(s) 59
MroXI GAANNNNTTC 2 cut(s) 316, 336
MscI TGGCCA 1 cut(s) 59
MseI TTAA 4 cut(s) 234, 632, 795, 899
MslI CAYNNNNRTG 4 cut(s) 59, 65, 780, 1015
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 3 cut(s) 275, 743, 1174
MspR9I CCNGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 1198
Mva1269I GAATGC 1 cut(s) 463
MwoI GCNNNNNNNGC 6 cut(s) 165, 404, 572, 626, 760, 991
NciI CCSGG 1 cut(s) 275
NcoI CCATGG 1 cut(s) 54
NdeII GATC 5 cut(s) 117, 349, 921, 939, 1143
NlaIII CATG 8 cut(s) 58, 64, 79, 365, 466, 587, 715, 1004
NlaIV GGNNCC 1 cut(s) 369
NmuCI GTSAC 4 cut(s) 419, 668, 773, 808
NspI RCATGY 1 cut(s) 715
OliI CACNNNNGTG 1 cut(s) 1015
PagI TCATGA 1 cut(s) 583
PciI ACATGT 1 cut(s) 711
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 2 cut(s) 316, 336
PfeI GAWTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 273
PkrI GCNGC 3 cut(s) 439, 495, 1172
PleI GAGTC 3 cut(s) 259, 462, 981
PpsI GAGTC 3 cut(s) 259, 462, 981
PscI ACATGT 1 cut(s) 711
PshBI ATTAAT 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 1125
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 368, 428
PstI CTGCAG 1 cut(s) 1151
PsuI RGATCY 2 cut(s) 939, 1143
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 4 cut(s) 59, 65, 780, 1015
SaqAI TTAA 4 cut(s) 234, 632, 795, 899
SatI GCNGC 3 cut(s) 438, 494, 1171
Sau3AI GATC 5 cut(s) 117, 349, 921, 939, 1143
Sau96I GGNCC 2 cut(s) 368, 428
SchI GAGTC 3 cut(s) 260, 462, 982
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 3 cut(s) 108, 820, 1121
SetI ASST 9 cut(s) 39, 126, 155, 165, 442, 865, 894, 1139, 1187
SfaNI GCATC 3 cut(s) 472, 502, 562
SfcI CTRYAG 1 cut(s) 1147
SmiMI CAYNNNNRTG 4 cut(s) 59, 65, 780, 1015
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 4 cut(s) 538, 633, 839, 1198
SsiI CCGC 4 cut(s) 32, 134, 494, 994
SspMI CTAG 1 cut(s) 1101
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 5 cut(s) 54, 99, 576, 820, 1133
TaaI ACNGT 6 cut(s) 86, 113, 425, 674, 1017, 1075
TaiI ACGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 120, 320, 676
TasI AATT 4 cut(s) 538, 633, 839, 1198
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 4 cut(s) 234, 632, 795, 899
Tru9I TTAA 4 cut(s) 234, 632, 795, 899
TscAI CASTG 3 cut(s) 193, 304, 1022
TseFI GTSAC 4 cut(s) 419, 668, 773, 808
TseI GCWGC 2 cut(s) 437, 1170
Tsp45I GTSAC 4 cut(s) 419, 668, 773, 808
TspDTI ATGAA 5 cut(s) 92, 272, 345, 600, 843
TspRI CASTG 3 cut(s) 193, 304, 1022
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 1 cut(s) 538
XceI RCATGY 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XmnI GAANNNNTTC 2 cut(s) 316, 336
XspI CTAG 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.