Rmu_sc0007942.1_g000010

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007942.1
OG0015600
Physical Location & Seq
Forward (+)
32120 .. 34102
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007942.1_g000010.1.cds

Sequence Viewer

Length: 1047 bp
atggtggctgaggccgagattatttgccagaatatggtgtcgatcgaggtttcgggcttcgaatcggttgtgaggtgcccagagaccattgctaatgctgtaatagagactcctgcagtcaagtttgttccaaccattcactcagggagccatagtgacatcggaggaaggcattccatggaagacgatcacattcggatcgatgacctatctgcccatgttgggcctctctttaagagttccttgccaagtgcattttatgcagtttttgatgggcatggcgggcctgaagcagctacttatatcaagaggaatgccatgagactattttttgaagatgctgacttgccgcatacagtagattttgatgatgctttcttcaaagagttggagaactcacataagaaagcatttttactggcagaccaggccttggccgatgaacacagtgtgggtggtttatgtggaaccacagcactgactgccctagtacttggaaggcagttgctcgtagcaaatgctggtgactgtcgggcagttctttgcaggaagggaatcgcatttgatatgtcccaagatcataagcatacttacttgccagaacgtaggcgggtggagcagttgggtggttactttgatggtgagtatctgaatagttatctctcagtcacccgaacccttggaaattgggatttcaaattaccatttggctcctcatcacctctcattgctgaaccggaggttcagcgggttaagttaacagaagatgatgagtttctgattattagttgtgatgggatatgggatgtcatgtctagccaatatgcagtgagtcttgttcggcgtgagctgaggaagcacagtgatccgcaacagtgtgccagagaactcgtgaaagaagcactacgcatgcatgcagctgacaatctcactgttattgttgtatgcctctcttctcctgatcgcactgttgagcctcgctctgaggggccaaggttaaggaactgcagtttttcaaggttgagaagcttgctggaaggcaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

348

Amino Acids

38.6

Weight (kDa)

5.39

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015600)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g20910
malus_domestica MD13G1147300.v1.1 MD16G1145700.v1.1
prunus_persica Prupe.1G110800_v2.0.a1
pyrus_communis pycom16g12490
rosa_chinensis RchiOBHm_Chr4g0426341
rosa_laevigata RLG00000007301
rosa_multiflora Rmu_sc0007942.1_g000010 Rmu_sc0020213.1_g000001
rosa_roxburghii Rroxscaffold_5G00368350
rosa_rugosa Rorug04G0210300
rosa_samantha Rh4AG267300 Rh4BG273200 Rh4CG287400 Rh4DG269900
rosa_wichuraiana Rw4G023160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 75
AccB7I CCANNNNNTGG 2 cut(s) 34, 433
AciI CCGC 5 cut(s) 282, 350, 610, 748, 869
AclWI GGATC 2 cut(s) 206, 860
AcoI YGGCCR 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 451
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 3 cut(s) 34, 222, 433
AgsI TTSAA 4 cut(s) 335, 382, 697, 1017
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 4 cut(s) 296, 850, 920, 1029
AluI AGCT 4 cut(s) 296, 850, 920, 1029
Alw26I GTCTC 3 cut(s) 77, 101, 316
AlwI GGATC 2 cut(s) 206, 860
AoxI GGCC 6 cut(s) 12, 224, 284, 429, 435, 989
ApeKI GCWGC 2 cut(s) 293, 917
Asp700I GAANNNNTTC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 224, 284, 989
AsuHPI GGTGA 4 cut(s) 536, 653, 661, 711
AsuII TTCGAA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 75
BauI CACGAG 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 189
BbvCI CCTCAGC 2 cut(s) 9, 851
BbvI GCAGC 2 cut(s) 305, 929
BccI CCATC 3 cut(s) 266, 632, 788
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 3 cut(s) 77, 101, 316
BfaI CTAG 2 cut(s) 488, 816
BfmI CTRYAG 2 cut(s) 114, 1006
BisI GCNGC 3 cut(s) 294, 350, 918
BlsI GCNGC 3 cut(s) 295, 351, 919
BmcAI AGTACT 1 cut(s) 492
Bme1390I CCNGG 1 cut(s) 428
BmgT120I GGNCC 3 cut(s) 224, 284, 989
BmiI GGNNCC 5 cut(s) 77, 149, 469, 712, 990
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 328, 361
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 965, 997
Bpu10I CCTNAGC 2 cut(s) 9, 851
Bpu14I TTCGAA 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 177, 432, 679, 992
BsaWI WCCGGW 1 cut(s) 736
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 222, 433
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 2 cut(s) 87, 726
BseBI CCWGG 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 177, 432, 679, 992
BseGI GGATG 1 cut(s) 811
BseLI CCNNNNNNNGG 3 cut(s) 34, 222, 433
BseMI GCAATG 2 cut(s) 87, 726
BseMII CTCAG 4 cut(s) 156, 678, 842, 975
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 703
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 2 cut(s) 305, 929
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 6 cut(s) 14, 226, 286, 431, 437, 991
BshNI GGYRCC 1 cut(s) 75
BshVI ATCGAT 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 737
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 3 cut(s) 34, 222, 433
BsmAI GTCTC 3 cut(s) 77, 101, 316
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 2 cut(s) 172, 319
BsnI GGCC 6 cut(s) 14, 226, 286, 431, 437, 991
Bso31I GGTCTC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 6 cut(s) 42, 187, 198, 577, 865, 961
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 5 cut(s) 282, 350, 610, 748, 869
BspANI GGCC 6 cut(s) 14, 226, 286, 431, 437, 991
BspCNI CTCAG 4 cut(s) 155, 677, 843, 976
BspDI ATCGAT 1 cut(s) 201
BspLI GGNNCC 5 cut(s) 77, 149, 469, 712, 990
BspMAI CTGCAG 2 cut(s) 118, 1010
BspPI GGATC 2 cut(s) 206, 860
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 2 cut(s) 87, 726
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 4 cut(s) 177, 432, 679, 992
BssMI GATC 6 cut(s) 42, 187, 198, 577, 865, 961
BssSI CACGAG 1 cut(s) 890
BssT1I CCWWGG 4 cut(s) 177, 432, 679, 992
Bst2BI CACGAG 1 cut(s) 890
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 7 cut(s) 358, 449, 530, 863, 876, 934, 970
Bst6I CTCTTC 1 cut(s) 958
BstAPI GCANNNNNTGC 2 cut(s) 260, 482
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 284, 911, 915, 1031
BstDEI CTNAG 5 cut(s) 9, 142, 664, 851, 984
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 811
BstKTI GATC 6 cut(s) 45, 190, 201, 580, 868, 964
BstMAI GTCTC 3 cut(s) 77, 101, 316
BstMBI GATC 6 cut(s) 42, 187, 198, 577, 865, 961
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 6 cut(s) 260, 283, 428, 482, 616, 856
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 913, 917
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 2 cut(s) 114, 1006
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 305, 929
BstV2I GAAGAC 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 6 cut(s) 14, 226, 286, 431, 437, 991
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 811
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 7 cut(s) 454, 476, 834, 868, 881, 930, 966
Cac8I GCNNGC 4 cut(s) 284, 911, 915, 1031
Cfr13I GGNCC 3 cut(s) 224, 284, 989
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 491
CviAII CATG 7 cut(s) 178, 218, 278, 319, 811, 910, 914
CviQI GTAC 1 cut(s) 491
DdeI CTNAG 5 cut(s) 9, 142, 664, 851, 984
DpnI GATC 6 cut(s) 44, 189, 200, 579, 867, 963
DpnII GATC 6 cut(s) 42, 187, 198, 577, 865, 961
DraIII CACNNNGTG 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 958
EarI CTCTTC 1 cut(s) 958
Eco130I CCWWGG 4 cut(s) 177, 432, 679, 992
Eco147I AGGCCT 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 4 cut(s) 177, 432, 679, 992
EcoT22I ATGCAT 1 cut(s) 915
ErhI CCWWGG 4 cut(s) 177, 432, 679, 992
FaeI CATG 7 cut(s) 181, 221, 281, 322, 814, 913, 917
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 1 cut(s) 556
FatI CATG 7 cut(s) 177, 217, 277, 318, 810, 909, 913
FauI CCCGC 3 cut(s) 275, 603, 741
Fnu4HI GCNGC 3 cut(s) 294, 350, 918
FokI GGATG 1 cut(s) 818
Fsp4HI GCNGC 3 cut(s) 294, 350, 918
FspBI CTAG 2 cut(s) 488, 816
GluI GCNGC 3 cut(s) 294, 350, 918
HaeIII GGCC 6 cut(s) 14, 226, 286, 431, 437, 991
HapII CCGG 1 cut(s) 737
Hin1II CATG 7 cut(s) 181, 221, 281, 322, 814, 913, 917
HincII GTYRAC 1 cut(s) 759
HindII GTYRAC 1 cut(s) 759
HindIII AAGCTT 1 cut(s) 1027
HinfI GANTC 4 cut(s) 62, 109, 555, 832
HpaI GTTAAC 1 cut(s) 759
HpaII CCGG 1 cut(s) 737
HphI GGTGA 4 cut(s) 536, 653, 661, 711
Hpy166II GTNNAC 1 cut(s) 759
Hpy188I TCNGA 5 cut(s) 164, 198, 651, 780, 985
Hpy188III TCNNGA 3 cut(s) 307, 892, 959
Hpy8I GTNNAC 1 cut(s) 759
HpyAV CCTTC 4 cut(s) 162, 492, 544, 1031
HpyCH4III ACNGT 7 cut(s) 358, 449, 530, 863, 876, 934, 970
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 8 cut(s) 116, 254, 263, 546, 827, 913, 917, 1008
HpyF10VI GCNNNNNNNGC 6 cut(s) 260, 283, 428, 482, 616, 856
HpyF3I CTNAG 5 cut(s) 9, 142, 664, 851, 984
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 7 cut(s) 181, 221, 281, 322, 814, 913, 917
KspAI GTTAAC 1 cut(s) 759
Kzo9I GATC 6 cut(s) 42, 187, 198, 577, 865, 961
LmnI GCTCC 3 cut(s) 147, 616, 716
Lsp1109I GCAGC 2 cut(s) 305, 929
LweI GCATC 2 cut(s) 328, 361
MaeI CTAG 2 cut(s) 488, 816
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 4 cut(s) 155, 524, 629, 667
MalI GATC 6 cut(s) 44, 189, 200, 579, 867, 963
MboI GATC 6 cut(s) 42, 187, 198, 577, 865, 961
MboII GAAGA 5 cut(s) 194, 347, 370, 776, 945
MfeI CAATTG 1 cut(s) 1042
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 3 cut(s) 685, 698, 1042
MlyI GAGTC 2 cut(s) 103, 841
MmeI TCCRAC 2 cut(s) 155, 369
Mph1103I ATGCAT 1 cut(s) 915
MroXI GAANNNNTTC 1 cut(s) 172
MseI TTAA 4 cut(s) 234, 753, 758, 998
MspA1I CMGCKG 2 cut(s) 748, 920
MspI CCGG 1 cut(s) 737
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 1042
Mva1269I GAATGC 2 cut(s) 172, 319
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 6 cut(s) 260, 283, 428, 482, 616, 856
NcoI CCATGG 1 cut(s) 177
NdeII GATC 6 cut(s) 42, 187, 198, 577, 865, 961
NlaIII CATG 7 cut(s) 181, 221, 281, 322, 814, 913, 917
NlaIV GGNNCC 5 cut(s) 77, 149, 469, 712, 990
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 3 cut(s) 155, 524, 667
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 2 cut(s) 913, 917
NspV TTCGAA 1 cut(s) 60
PaeI GCATGC 2 cut(s) 913, 917
PceI AGGCCT 1 cut(s) 431
PctI GAATGC 2 cut(s) 172, 319
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 62, 555
PflMI CCANNNNNTGG 2 cut(s) 34, 433
PkrI GCNGC 3 cut(s) 295, 351, 919
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 2 cut(s) 103, 840
PpsI GAGTC 2 cut(s) 103, 840
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 5 cut(s) 77, 149, 469, 712, 990
PspPI GGNCC 3 cut(s) 224, 284, 989
PstI CTGCAG 2 cut(s) 118, 1010
PvuI CGATCG 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SaqAI TTAA 4 cut(s) 234, 753, 758, 998
SatI GCNGC 3 cut(s) 294, 350, 918
Sau3AI GATC 6 cut(s) 42, 187, 198, 577, 865, 961
Sau96I GGNCC 3 cut(s) 224, 284, 989
ScaI AGTACT 1 cut(s) 492
SchI GAGTC 2 cut(s) 103, 841
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 80
SfaNI GCATC 2 cut(s) 328, 361
SfcI CTRYAG 2 cut(s) 114, 1006
SfuI TTCGAA 1 cut(s) 60
SphI GCATGC 2 cut(s) 913, 917
Sse9I AATT 3 cut(s) 685, 698, 1042
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 5 cut(s) 282, 350, 610, 748, 869
SspMI CTAG 2 cut(s) 488, 816
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 4 cut(s) 177, 432, 679, 992
TaaI ACNGT 7 cut(s) 358, 449, 530, 863, 876, 934, 970
TaiI ACGT 1 cut(s) 607
TaqI TCGA 4 cut(s) 41, 45, 60, 201
TasI AATT 3 cut(s) 685, 698, 1042
TatI WGTACW 1 cut(s) 490
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 2 cut(s) 62, 555
Tru1I TTAA 4 cut(s) 234, 753, 758, 998
Tru9I TTAA 4 cut(s) 234, 753, 758, 998
TscAI CASTG 7 cut(s) 454, 483, 834, 868, 881, 937, 973
TseFI GTSAC 3 cut(s) 155, 524, 667
TseI GCWGC 2 cut(s) 293, 917
Tsp45I GTSAC 3 cut(s) 155, 524, 667
TspDTI ATGAA 1 cut(s) 456
TspRI CASTG 7 cut(s) 454, 483, 834, 868, 881, 937, 973
Van91I CCANNNNNTGG 2 cut(s) 34, 433
XceI RCATGY 2 cut(s) 913, 917
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 2 cut(s) 488, 816
ZrmI AGTACT 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.