E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17205 AT3G17205 AT3G17205 |
| fragaria_vesca | FvH4_4g20760 FvH4_4g20760 FvH4_4g20760 FvH4_4g20760 |
| malus_domestica | MD13G1148100.v1.1 MD16G1148200.v1.1 |
| prunus_persica | Prupe.1G111600_v2.0.a1 Prupe.1G111600_v2.0.a1 |
| pyrus_communis | pycom13g12750 pycom16g12650 |
| rosa_chinensis | RchiOBHm_Chr4g0426201 |
| rosa_laevigata | RLG00000007311 |
| rosa_multiflora | Rmu_sc0000730.1_g000025 |
| rosa_roxburghii | Rroxscaffold_5G00368220 |
| rosa_rugosa | Rorug04G0209500 |
| rosa_samantha | Rh4AG266300 Rh4BG272400 Rh4CG285600 Rh4DG268700 |
| rosa_wichuraiana | Rw4G023030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2073, 2481 |
| Acc36I | ACCTGC | 1 cut(s) | 782 |
| AccB1I | GGYRCC | 1 cut(s) | 1452 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 250, 436 |
| AccI | GTMKAC | 2 cut(s) | 1062, 1557 |
| AccII | CGCG | 1 cut(s) | 1240 |
| AciI | CCGC | 9 cut(s) | 112, 115, 188, 289, 1238, 1340, 1890, 2047, 2455 |
| AclI | AACGTT | 1 cut(s) | 2381 |
| AclWI | GGATC | 8 cut(s) | 519, 581, 594, 685, 782, 1229, 2058, 2063 |
| AcsI | RAATTY | 7 cut(s) | 153, 813, 1082, 1438, 2138, 2638, 2882 |
| AcuI | CTGAAG | 5 cut(s) | 151, 347, 2115, 2717, 3003 |
| AdeI | CACNNNGTG | 1 cut(s) | 914 |
| AfaI | GTAC | 9 cut(s) | 58, 697, 772, 936, 1401, 1944, 2411, 2453, 2510 |
| AflII | CTTAAG | 1 cut(s) | 2671 |
| AflIII | ACRYGT | 2 cut(s) | 1357, 2581 |
| AjnI | CCWGG | 6 cut(s) | 976, 1036, 1507, 1519, 2272, 2564 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1190, 1222, 1733, 1765 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2286, 2318 |
| Alw21I | GWGCWC | 2 cut(s) | 2909, 2992 |
| AlwI | GGATC | 8 cut(s) | 519, 581, 594, 685, 782, 1229, 2058, 2063 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 191, 2740, 3101 |
| Ama87I | CYCGRG | 4 cut(s) | 10, 530, 2205, 2910 |
| AoxI | GGCC | 5 cut(s) | 1095, 1659, 1887, 2340, 2915 |
| ApoI | RAATTY | 7 cut(s) | 153, 813, 1082, 1438, 2138, 2638, 2882 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 164, 842, 1422, 1715 |
| AspLEI | GCGC | 2 cut(s) | 108, 1242 |
| AspS9I | GGNCC | 7 cut(s) | 269, 1096, 1307, 1660, 2111, 2440, 2915 |
| AsuC2I | CCSGG | 1 cut(s) | 2902 |
| AsuHPI | GGTGA | 6 cut(s) | 338, 1363, 1693, 1711, 2498, 2621 |
| AsuNHI | GCTAGC | 1 cut(s) | 1570 |
| AvaI | CYCGRG | 4 cut(s) | 10, 530, 2205, 2910 |
| AvaII | GGWCC | 4 cut(s) | 269, 1307, 2111, 2440 |
| BamHI | GGATCC | 1 cut(s) | 586 |
| BanI | GGYRCC | 1 cut(s) | 1452 |
| BanII | GRGCYC | 1 cut(s) | 2992 |
| BauI | CACGAG | 1 cut(s) | 1905 |
| Bbv12I | GWGCWC | 2 cut(s) | 2909, 2992 |
| BccI | CCATC | 6 cut(s) | 344, 577, 898, 1141, 1853, 2159 |
| BceAI | ACGGC | 1 cut(s) | 143 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 878, 912 |
| BciT130I | CCWGG | 6 cut(s) | 978, 1038, 1509, 1521, 2274, 2566 |
| BclI | TGATCA | 1 cut(s) | 2818 |
| BcnI | CCSGG | 1 cut(s) | 2902 |
| BfaI | CTAG | 5 cut(s) | 1382, 1403, 1571, 1992, 2333 |
| BfmI | CTRYAG | 3 cut(s) | 1059, 1689, 3009 |
| BfrI | CTTAAG | 1 cut(s) | 2671 |
| BfuAI | ACCTGC | 1 cut(s) | 782 |
| Bme1390I | CCNGG | 7 cut(s) | 978, 1038, 1509, 1521, 2274, 2566, 2902 |
| Bme18I | GGWCC | 4 cut(s) | 269, 1307, 2111, 2440 |
| BmeT110I | CYCGRG | 4 cut(s) | 10, 530, 2205, 2910 |
| BmgT120I | GGNCC | 7 cut(s) | 269, 1096, 1307, 1660, 2111, 2440, 2915 |
| BmiI | GGNNCC | 4 cut(s) | 271, 588, 1454, 2943 |
| BmrFI | CCNGG | 7 cut(s) | 978, 1038, 1509, 1521, 2274, 2566, 2902 |
| BmrI | ACTGGG | 1 cut(s) | 1836 |
| BmsI | GCATC | 7 cut(s) | 301, 1216, 1504, 2056, 2775, 2987, 3088 |
| BmtI | GCTAGC | 1 cut(s) | 1574 |
| BmuI | ACTGGG | 1 cut(s) | 1836 |
| BpmI | CTGGAG | 4 cut(s) | 107, 122, 817, 1038 |
| BpuMI | CCSGG | 1 cut(s) | 2902 |
| Bsa29I | ATCGAT | 1 cut(s) | 786 |
| BsaAI | YACGTR | 1 cut(s) | 2582 |
| BsaJI | CCNNGG | 7 cut(s) | 60, 531, 599, 1303, 2564, 2565, 2911 |
| BsaWI | WCCGGW | 2 cut(s) | 1309, 1426 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1164, 1194, 2286, 2316 |
| Bse118I | RCCGGY | 1 cut(s) | 354 |
| Bse1I | ACTGG | 5 cut(s) | 292, 800, 1290, 1842, 3069 |
| Bse3DI | GCAATG | 1 cut(s) | 238 |
| BseBI | CCWGG | 6 cut(s) | 978, 1038, 1509, 1521, 2274, 2566 |
| BseCI | ATCGAT | 1 cut(s) | 786 |
| BseDI | CCNNGG | 7 cut(s) | 60, 531, 599, 1303, 2564, 2565, 2911 |
| BseGI | GGATG | 9 cut(s) | 336, 885, 1162, 1318, 1835, 2246, 2773, 2790, 2841 |
| BseMI | GCAATG | 1 cut(s) | 238 |
| BseMII | CTCAG | 4 cut(s) | 1046, 1476, 1666, 2381 |
| BseNI | ACTGG | 5 cut(s) | 292, 800, 1290, 1842, 3069 |
| BseRI | GAGGAG | 2 cut(s) | 1604, 2165 |
| BsgI | GTGCAG | 2 cut(s) | 129, 3114 |
| Bsh1236I | CGCG | 1 cut(s) | 1240 |
| BshFI | GGCC | 5 cut(s) | 1097, 1661, 1889, 2342, 2917 |
| BshNI | GGYRCC | 1 cut(s) | 1452 |
| BshVI | ATCGAT | 1 cut(s) | 786 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2909, 2992 |
| BsiHKCI | CYCGRG | 4 cut(s) | 10, 530, 2205, 2910 |
| BsiSI | CCGG | 5 cut(s) | 355, 1310, 1427, 2044, 2901 |
| BslFI | GGGAC | 3 cut(s) | 63, 83, 255 |
| BsmFI | GGGAC | 3 cut(s) | 63, 83, 255 |
| BsnI | GGCC | 5 cut(s) | 1097, 1661, 1889, 2342, 2917 |
| BsoBI | CYCGRG | 4 cut(s) | 10, 530, 2205, 2910 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2909, 2992 |
| Bsp19I | CCATGG | 1 cut(s) | 599 |
| BspACI | CCGC | 9 cut(s) | 112, 115, 188, 289, 1238, 1340, 1890, 2047, 2455 |
| BspANI | GGCC | 5 cut(s) | 1097, 1661, 1889, 2342, 2917 |
| BspCNI | CTCAG | 4 cut(s) | 1045, 1477, 1665, 2382 |
| BspDI | ATCGAT | 1 cut(s) | 786 |
| BspFNI | CGCG | 1 cut(s) | 1240 |
| BspHI | TCATGA | 3 cut(s) | 1143, 1392, 2290 |
| BspLI | GGNNCC | 4 cut(s) | 271, 588, 1454, 2943 |
| BspMAI | CTGCAG | 1 cut(s) | 3013 |
| BspMI | ACCTGC | 1 cut(s) | 782 |
| BspOI | GCTAGC | 1 cut(s) | 1574 |
| BspPI | GGATC | 8 cut(s) | 519, 581, 594, 685, 782, 1229, 2058, 2063 |
| BspQI | GCTCTTC | 1 cut(s) | 2547 |
| BspT107I | GGYRCC | 1 cut(s) | 1452 |
| BspTI | CTTAAG | 1 cut(s) | 2671 |
| BsrDI | GCAATG | 1 cut(s) | 238 |
| BsrFI | RCCGGY | 1 cut(s) | 354 |
| BsrI | ACTGG | 5 cut(s) | 292, 800, 1290, 1842, 3069 |
| BssAI | RCCGGY | 1 cut(s) | 354 |
| BssECI | CCNNGG | 7 cut(s) | 60, 531, 599, 1303, 2564, 2565, 2911 |
| BssNAI | GTATAC | 1 cut(s) | 1558 |
| BssSI | CACGAG | 1 cut(s) | 1905 |
| BssT1I | CCWWGG | 2 cut(s) | 60, 599 |
| Bst1107I | GTATAC | 1 cut(s) | 1558 |
| Bst2BI | CACGAG | 1 cut(s) | 1905 |
| Bst2UI | CCWGG | 6 cut(s) | 978, 1038, 1509, 1521, 2274, 2566 |
| Bst4CI | ACNGT | 9 cut(s) | 544, 561, 616, 1399, 1452, 1729, 1803, 2508, 2633 |
| Bst6I | CTCTTC | 2 cut(s) | 1131, 2547 |
| BstAFI | CTTAAG | 1 cut(s) | 2671 |
| BstBAI | YACGTR | 1 cut(s) | 2582 |
| BstC8I | GCNNGC | 7 cut(s) | 356, 409, 988, 1072, 1572, 1929, 3103 |
| BstDEI | CTNAG | 6 cut(s) | 201, 853, 1032, 1485, 1652, 2390 |
| BstDSI | CCRYGG | 2 cut(s) | 599, 1303 |
| BstF5I | GGATG | 9 cut(s) | 336, 885, 1162, 1318, 1835, 2246, 2773, 2790, 2841 |
| BstFNI | CGCG | 1 cut(s) | 1240 |
| BstHHI | GCGC | 2 cut(s) | 108, 1242 |
| BstNI | CCWGG | 6 cut(s) | 978, 1038, 1509, 1521, 2274, 2566 |
| BstNSI | RCATGY | 2 cut(s) | 1361, 1570 |
| BstSCI | CCNGG | 7 cut(s) | 976, 1036, 1507, 1519, 2272, 2564, 2900 |
| BstSFI | CTRYAG | 3 cut(s) | 1059, 1689, 3009 |
| BstUI | CGCG | 1 cut(s) | 1240 |
| BstX2I | RGATCY | 4 cut(s) | 586, 690, 1234, 2055 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 343, 2321, 2800 |
| BstYI | RGATCY | 4 cut(s) | 586, 690, 1234, 2055 |
| BstZ17I | GTATAC | 1 cut(s) | 1558 |
| Bsu15I | ATCGAT | 1 cut(s) | 786 |
| BsuRI | GGCC | 5 cut(s) | 1097, 1661, 1889, 2342, 2917 |
| BsuTUI | ATCGAT | 1 cut(s) | 786 |
| BtgI | CCRYGG | 2 cut(s) | 599, 1303 |
| BtsCI | GGATG | 9 cut(s) | 336, 885, 1162, 1318, 1835, 2246, 2773, 2790, 2841 |
| BtsIMutI | CAGTG | 5 cut(s) | 476, 793, 1297, 1725, 1849 |
| BveI | ACCTGC | 1 cut(s) | 782 |
| Cac8I | GCNNGC | 7 cut(s) | 356, 409, 988, 1072, 1572, 1929, 3103 |
| CaiI | CAGNNNCTG | 3 cut(s) | 191, 2740, 3101 |
| CciI | TCATGA | 3 cut(s) | 1143, 1392, 2290 |
| CfoI | GCGC | 2 cut(s) | 108, 1242 |
| Cfr10I | RCCGGY | 1 cut(s) | 354 |
| Cfr13I | GGNCC | 7 cut(s) | 269, 1096, 1307, 1660, 2111, 2440, 2915 |
| ClaI | ATCGAT | 1 cut(s) | 786 |
| CpoI | CGGWCCG | 1 cut(s) | 1307 |
| CsiI | ACCWGGT | 2 cut(s) | 976, 1519 |
| Csp6I | GTAC | 9 cut(s) | 57, 696, 771, 935, 1400, 1943, 2410, 2452, 2509 |
| CspI | CGGWCCG | 1 cut(s) | 1307 |
| CviQI | GTAC | 9 cut(s) | 57, 696, 771, 935, 1400, 1943, 2410, 2452, 2509 |
| DdeI | CTNAG | 6 cut(s) | 201, 853, 1032, 1485, 1652, 2390 |
| DraI | TTTAAA | 2 cut(s) | 2421, 2932 |
| DraIII | CACNNNGTG | 1 cut(s) | 914 |
| Eam1104I | CTCTTC | 2 cut(s) | 1131, 2547 |
| EarI | CTCTTC | 2 cut(s) | 1131, 2547 |
| EciI | GGCGGA | 1 cut(s) | 278 |
| Ecl136II | GAGCTC | 1 cut(s) | 2990 |
| Eco130I | CCWWGG | 2 cut(s) | 60, 599 |
| Eco24I | GRGCYC | 1 cut(s) | 2992 |
| Eco32I | GATATC | 2 cut(s) | 1630, 2745 |
| Eco47I | GGWCC | 4 cut(s) | 269, 1307, 2111, 2440 |
| Eco53kI | GAGCTC | 1 cut(s) | 2990 |
| Eco57I | CTGAAG | 5 cut(s) | 151, 347, 2115, 2717, 3003 |
| Eco88I | CYCGRG | 4 cut(s) | 10, 530, 2205, 2910 |
| EcoICRI | GAGCTC | 1 cut(s) | 2990 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1096, 1660, 2915 |
| EcoRII | CCWGG | 6 cut(s) | 976, 1036, 1507, 1519, 2272, 2564 |
| EcoRV | GATATC | 2 cut(s) | 1630, 2745 |
| EcoT14I | CCWWGG | 2 cut(s) | 60, 599 |
| EcoT22I | ATGCAT | 1 cut(s) | 2980 |
| EcoT38I | GRGCYC | 1 cut(s) | 2992 |
| ErhI | CCWWGG | 2 cut(s) | 60, 599 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 625, 657, 2088, 2120, 2544, 2576, 2976, 3008 |
| FaqI | GGGAC | 3 cut(s) | 63, 83, 255 |
| FauI | CCCGC | 1 cut(s) | 2040 |
| FauNDI | CATATG | 1 cut(s) | 229 |
| FbaI | TGATCA | 1 cut(s) | 2818 |
| FblI | GTMKAC | 2 cut(s) | 1062, 1557 |
| FokI | GGATG | 9 cut(s) | 323, 892, 1169, 1325, 1822, 2233, 2780, 2797, 2848 |
| FriOI | GRGCYC | 1 cut(s) | 2992 |
| FspBI | CTAG | 5 cut(s) | 1382, 1403, 1571, 1992, 2333 |
| GlaI | GCGC | 2 cut(s) | 107, 1241 |
| GsuI | CTGGAG | 4 cut(s) | 107, 122, 817, 1038 |
| HaeIII | GGCC | 5 cut(s) | 1097, 1661, 1889, 2342, 2917 |
| HapII | CCGG | 5 cut(s) | 355, 1310, 1427, 2044, 2901 |
| HhaI | GCGC | 2 cut(s) | 108, 1242 |
| Hin6I | GCGC | 2 cut(s) | 106, 1240 |
| HinP1I | GCGC | 2 cut(s) | 106, 1240 |
| HincII | GTYRAC | 4 cut(s) | 549, 1867, 2654, 2773 |
| HindII | GTYRAC | 4 cut(s) | 549, 1867, 2654, 2773 |
| HindIII | AAGCTT | 4 cut(s) | 80, 593, 2857, 3035 |
| HpaII | CCGG | 5 cut(s) | 355, 1310, 1427, 2044, 2901 |
| HphI | GGTGA | 6 cut(s) | 338, 1363, 1693, 1711, 2498, 2621 |
| HpyAV | CCTTC | 8 cut(s) | 502, 1001, 1109, 1113, 1618, 1945, 2442, 2978 |
| HpyCH4III | ACNGT | 9 cut(s) | 544, 561, 616, 1399, 1452, 1729, 1803, 2508, 2633 |
| HpyCH4IV | ACGT | 4 cut(s) | 2126, 2381, 2581, 2650 |
| HpyF3I | CTNAG | 6 cut(s) | 201, 853, 1032, 1485, 1652, 2390 |
| HpySE526I | ACGT | 4 cut(s) | 2126, 2381, 2581, 2650 |
| HspAI | GCGC | 2 cut(s) | 106, 1240 |
| KroI | GCCGGC | 1 cut(s) | 354 |
| KroNI | GCCGGC | 1 cut(s) | 356 |
| Ksp22I | TGATCA | 1 cut(s) | 2818 |
| LguI | GCTCTTC | 1 cut(s) | 2547 |
| LmnI | GCTCC | 7 cut(s) | 88, 103, 798, 1699, 1936, 2912, 2987 |
| LweI | GCATC | 7 cut(s) | 301, 1216, 1504, 2056, 2775, 2987, 3088 |
| MabI | ACCWGGT | 2 cut(s) | 976, 1519 |
| MaeI | CTAG | 5 cut(s) | 1382, 1403, 1571, 1992, 2333 |
| MaeII | ACGT | 4 cut(s) | 2126, 2381, 2581, 2650 |
| MaeIII | GTNAC | 6 cut(s) | 294, 1360, 1844, 2122, 2584, 2896 |
| MfeI | CAATTG | 2 cut(s) | 503, 1979 |
| MflI | RGATCY | 4 cut(s) | 586, 690, 1234, 2055 |
| MhlI | GDGCHC | 2 cut(s) | 2909, 2992 |
| MlyI | GAGTC | 3 cut(s) | 19, 892, 1644 |
| MmeI | TCCRAC | 3 cut(s) | 202, 450, 1071 |
| Mph1103I | ATGCAT | 1 cut(s) | 2980 |
| MroNI | GCCGGC | 1 cut(s) | 354 |
| MroXI | GAANNNNTTC | 4 cut(s) | 164, 842, 1422, 1715 |
| MslI | CAYNNNNRTG | 6 cut(s) | 341, 469, 930, 1857, 2834, 3020 |
| MspA1I | CMGCKG | 2 cut(s) | 188, 1331 |
| MspCI | CTTAAG | 1 cut(s) | 2671 |
| MspI | CCGG | 5 cut(s) | 355, 1310, 1427, 2044, 2901 |
| MspR9I | CCNGG | 7 cut(s) | 978, 1038, 1509, 1521, 2274, 2566, 2902 |
| MunI | CAATTG | 2 cut(s) | 503, 1979 |
| MvaI | CCWGG | 6 cut(s) | 978, 1038, 1509, 1521, 2274, 2566 |
| MvnI | CGCG | 1 cut(s) | 1240 |
| NaeI | GCCGGC | 1 cut(s) | 356 |
| NciI | CCSGG | 1 cut(s) | 2902 |
| NcoI | CCATGG | 1 cut(s) | 599 |
| NdeI | CATATG | 1 cut(s) | 229 |
| NgoMIV | GCCGGC | 1 cut(s) | 354 |
| NheI | GCTAGC | 1 cut(s) | 1570 |
| NlaIV | GGNNCC | 4 cut(s) | 271, 588, 1454, 2943 |
| NmeAIII | GCCGAG | 1 cut(s) | 119 |
| NmuCI | GTSAC | 2 cut(s) | 1844, 2896 |
| NsiI | ATGCAT | 1 cut(s) | 2980 |
| NspI | RCATGY | 2 cut(s) | 1361, 1570 |
| PaeR7I | CTCGAG | 1 cut(s) | 2205 |
| PagI | TCATGA | 3 cut(s) | 1143, 1392, 2290 |
| PasI | CCCWGGG | 1 cut(s) | 2565 |
| PciI | ACATGT | 1 cut(s) | 1357 |
| PciSI | GCTCTTC | 1 cut(s) | 2547 |
| PdiI | GCCGGC | 1 cut(s) | 356 |
| PdmI | GAANNNNTTC | 4 cut(s) | 164, 842, 1422, 1715 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 250, 436 |
| PleI | GAGTC | 3 cut(s) | 19, 891, 1643 |
| PpsI | GAGTC | 3 cut(s) | 19, 891, 1643 |
| Ppu21I | YACGTR | 1 cut(s) | 2582 |
| PscI | ACATGT | 1 cut(s) | 1357 |
| PsiI | TTATAA | 2 cut(s) | 2073, 2481 |
| Psp124BI | GAGCTC | 1 cut(s) | 2992 |
| Psp1406I | AACGTT | 1 cut(s) | 2381 |
| Psp6I | CCWGG | 6 cut(s) | 976, 1036, 1507, 1519, 2272, 2564 |
| PspGI | CCWGG | 6 cut(s) | 976, 1036, 1507, 1519, 2272, 2564 |
| PspN4I | GGNNCC | 4 cut(s) | 271, 588, 1454, 2943 |
| PspPI | GGNCC | 7 cut(s) | 269, 1096, 1307, 1660, 2111, 2440, 2915 |
| PspXI | VCTCGAGB | 1 cut(s) | 2205 |
| PstI | CTGCAG | 1 cut(s) | 3013 |
| PstNI | CAGNNNCTG | 3 cut(s) | 191, 2740, 3101 |
| PsuI | RGATCY | 4 cut(s) | 586, 690, 1234, 2055 |
| PvuII | CAGCTG | 1 cut(s) | 1331 |
| RsaI | GTAC | 9 cut(s) | 58, 697, 772, 936, 1401, 1944, 2411, 2453, 2510 |
| RsaNI | GTAC | 9 cut(s) | 57, 696, 771, 935, 1400, 1943, 2410, 2452, 2509 |
| RseI | CAYNNNNRTG | 6 cut(s) | 341, 469, 930, 1857, 2834, 3020 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1307 |
| RsrII | CGGWCCG | 1 cut(s) | 1307 |
| SacI | GAGCTC | 1 cut(s) | 2992 |
| SapI | GCTCTTC | 1 cut(s) | 2547 |
| Sau96I | GGNCC | 7 cut(s) | 269, 1096, 1307, 1660, 2111, 2440, 2915 |
| SchI | GAGTC | 3 cut(s) | 19, 892, 1644 |
| ScrFI | CCNGG | 7 cut(s) | 978, 1038, 1509, 1521, 2274, 2566, 2902 |
| SduI | GDGCHC | 2 cut(s) | 2909, 2992 |
| SexAI | ACCWGGT | 2 cut(s) | 976, 1519 |
| SfaNI | GCATC | 7 cut(s) | 301, 1216, 1504, 2056, 2775, 2987, 3088 |
| SfcI | CTRYAG | 3 cut(s) | 1059, 1689, 3009 |
| Sfr274I | CTCGAG | 1 cut(s) | 2205 |
| SinI | GGWCC | 4 cut(s) | 269, 1307, 2111, 2440 |
| SlaI | CTCGAG | 1 cut(s) | 2205 |
| SmiI | ATTTAAAT | 2 cut(s) | 2421, 2932 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 341, 469, 930, 1857, 2834, 3020 |
| SmlI | CTYRAG | 2 cut(s) | 2205, 2671 |
| SmoI | CTYRAG | 2 cut(s) | 2205, 2671 |
| SsiI | CCGC | 9 cut(s) | 112, 115, 188, 289, 1238, 1340, 1890, 2047, 2455 |
| SspI | AATATT | 1 cut(s) | 1968 |
| SspMI | CTAG | 5 cut(s) | 1382, 1403, 1571, 1992, 2333 |
| SstI | GAGCTC | 1 cut(s) | 2992 |
| StyD4I | CCNGG | 7 cut(s) | 976, 1036, 1507, 1519, 2272, 2564, 2900 |
| StyI | CCWWGG | 2 cut(s) | 60, 599 |
| SwaI | ATTTAAAT | 2 cut(s) | 2421, 2932 |
| TaaI | ACNGT | 9 cut(s) | 544, 561, 616, 1399, 1452, 1729, 1803, 2508, 2633 |
| TaiI | ACGT | 4 cut(s) | 2129, 2384, 2584, 2653 |
| TaqI | TCGA | 5 cut(s) | 23, 316, 786, 2107, 2206 |
| TaqII | GACCGA | 2 cut(s) | 2128, 3012 |
| TatI | WGTACW | 4 cut(s) | 934, 1399, 2409, 2508 |
| TauI | GCSGC | 4 cut(s) | 117, 191, 1343, 1892 |
| TscAI | CASTG | 5 cut(s) | 476, 800, 1297, 1732, 1849 |
| TseFI | GTSAC | 2 cut(s) | 1844, 2896 |
| Tsp45I | GTSAC | 2 cut(s) | 1844, 2896 |
| TspGWI | ACGGA | 4 cut(s) | 67, 683, 1320, 2797 |
| TspRI | CASTG | 5 cut(s) | 476, 800, 1297, 1732, 1849 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 250, 436 |
| Vha464I | CTTAAG | 1 cut(s) | 2671 |
| VpaK11BI | GGWCC | 4 cut(s) | 269, 1307, 2111, 2440 |
| XapI | RAATTY | 7 cut(s) | 153, 813, 1082, 1438, 2138, 2638, 2882 |
| XbaI | TCTAGA | 1 cut(s) | 1381 |
| XceI | RCATGY | 2 cut(s) | 1361, 1570 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 433 |
| XhoI | CTCGAG | 1 cut(s) | 2205 |
| XmiI | GTMKAC | 2 cut(s) | 1062, 1557 |
| XmnI | GAANNNNTTC | 4 cut(s) | 164, 842, 1422, 1715 |
| XspI | CTAG | 5 cut(s) | 1382, 1403, 1571, 1992, 2333 |
| Zsp2I | ATGCAT | 1 cut(s) | 2980 |